More than 300 homologs were found in PanDaTox collection
for query gene PputGB1_1888 on replicon NC_010322
Organism: Pseudomonas putida GB-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_2257  aerotaxis receptor Aer-1  96.55 
 
 
521 aa  942    Pseudomonas putida KT2440  Bacteria  normal  0.215452  normal  0.0215353 
 
 
-
 
NC_009512  Pput_3481  methyl-accepting chemotaxis sensory transducer  96.74 
 
 
521 aa  958    Pseudomonas putida F1  Bacteria  normal  normal  0.41765 
 
 
-
 
NC_010322  PputGB1_1888  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  100 
 
 
521 aa  1040    Pseudomonas putida GB-1  Bacteria  normal  0.378373  normal 
 
 
-
 
NC_002947  PP_4521  aerotaxis receptor, putative  52.96 
 
 
521 aa  483  1e-135  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1390  methyl-accepting chemotaxis sensory transducer  53.15 
 
 
534 aa  483  1e-135  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1800  methyl-accepting chemotaxis sensory transducer  52.09 
 
 
521 aa  479  1e-134  Pseudomonas mendocina ymp  Bacteria  normal  0.258308  normal  0.504821 
 
 
-
 
NC_010322  PputGB1_4027  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  52.77 
 
 
521 aa  479  1e-134  Pseudomonas putida GB-1  Bacteria  normal  0.664053  normal  0.0821551 
 
 
-
 
NC_010501  PputW619_3813  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  52.2 
 
 
521 aa  472  1e-132  Pseudomonas putida W619  Bacteria  normal  0.629648  normal  0.0156802 
 
 
-
 
NC_004578  PSPTO_1648  aerotaxis receptor  49.81 
 
 
521 aa  471  1.0000000000000001e-131  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3735  PAS  50.19 
 
 
521 aa  470  1.0000000000000001e-131  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.065462 
 
 
-
 
NC_004578  PSPTO_2014  aerotaxis receptor  47.43 
 
 
521 aa  449  1e-125  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3406  PAS  47.43 
 
 
521 aa  446  1.0000000000000001e-124  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.387271  normal  0.671486 
 
 
-
 
NC_007492  Pfl01_1833  chemotaxis sensory transducer, Pas/Pac sensor  48 
 
 
521 aa  447  1.0000000000000001e-124  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.884809  normal 
 
 
-
 
NC_009438  Sputcn32_3109  methyl-accepting chemotaxis sensory transducer  46.29 
 
 
522 aa  442  1e-123  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_44300  aerotaxis receptor Aer  47.25 
 
 
521 aa  443  1e-123  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1630  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  47.53 
 
 
521 aa  445  1e-123  Pseudomonas putida W619  Bacteria  normal  normal  0.814601 
 
 
-
 
NC_009656  PSPA7_3770  aerotaxis receptor Aer  47.25 
 
 
521 aa  443  1e-123  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3628  methyl-accepting chemotaxis sensory transducer  46.77 
 
 
521 aa  439  9.999999999999999e-123  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1902  methyl-accepting chemotaxis sensory transducer  46.86 
 
 
521 aa  441  9.999999999999999e-123  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00326538  normal  0.948878 
 
 
-
 
NC_002947  PP_2111  aerotaxis receptor Aer-2  46.77 
 
 
521 aa  438  1e-121  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0317394 
 
 
-
 
NC_010322  PputGB1_1653  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  46.77 
 
 
521 aa  436  1e-121  Pseudomonas putida GB-1  Bacteria  normal  0.976535  normal  0.292811 
 
 
-
 
NC_008740  Maqu_0262  methyl-accepting chemotaxis sensory transducer  44.96 
 
 
524 aa  420  1e-116  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3595  methyl-accepting chemotaxis sensory transducer  43.1 
 
 
515 aa  411  1e-113  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_03783  Methyl-accepting chemotaxis protein (PAS/PAC and MSP doamins)  43.49 
 
 
527 aa  388  1e-106  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  43.16 
 
 
523 aa  384  1e-105  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_008740  Maqu_0389  methyl-accepting chemotaxis sensory transducer  49.14 
 
 
419 aa  374  1e-102  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1214  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  41.63 
 
 
527 aa  367  1e-100  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4186  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.65 
 
 
526 aa  353  4e-96  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0580  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  41.33 
 
 
521 aa  346  7e-94  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0413099 
 
 
-
 
NC_008577  Shewana3_0582  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40 
 
 
524 aa  345  8.999999999999999e-94  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4658  chemotaxis sensory transducer, Pas/Pac sensor  40.04 
 
 
529 aa  341  2e-92  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3908  methyl-accepting chemotaxis sensory transducer  39.17 
 
 
524 aa  335  1e-90  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0583  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  39.2 
 
 
524 aa  335  1e-90  Shewanella sp. MR-4  Bacteria  normal  normal  0.344402 
 
 
-
 
NC_008322  Shewmr7_3447  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  39.2 
 
 
524 aa  335  1e-90  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3725  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  39.17 
 
 
524 aa  334  2e-90  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0543  methyl-accepting chemotaxis sensory transducer  39.17 
 
 
524 aa  334  2e-90  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3782  methyl-accepting chemotaxis sensory transducer  38.77 
 
 
524 aa  332  7.000000000000001e-90  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4451  methyl-accepting chemotaxis sensory transducer  42.86 
 
 
531 aa  331  2e-89  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3294  methyl-accepting chemotaxis sensory transducer  39.17 
 
 
524 aa  322  7e-87  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0250  methyl-accepting chemotaxis protein  36.07 
 
 
518 aa  322  9.000000000000001e-87  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0974  methyl-accepting chemotaxis sensory transducer  40.34 
 
 
532 aa  322  9.999999999999999e-87  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3460  methyl-accepting chemotaxis sensory transducer  34.62 
 
 
520 aa  320  5e-86  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0584  methyl-accepting chemotaxis protein  37.6 
 
 
524 aa  317  3e-85  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_1860  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.31 
 
 
524 aa  312  9e-84  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2159  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.92 
 
 
523 aa  303  6.000000000000001e-81  Shewanella loihica PV-4  Bacteria  normal  0.416992  normal  0.881373 
 
 
-
 
NC_008789  Hhal_1125  methyl-accepting chemotaxis sensory transducer  37.57 
 
 
532 aa  299  6e-80  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1196  methyl-accepting chemotaxis sensory transducer  37.58 
 
 
522 aa  297  2e-79  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3404  methyl-accepting chemotaxis protein  37.04 
 
 
522 aa  296  7e-79  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008740  Maqu_3270  methyl-accepting chemotaxis sensory transducer  35.93 
 
 
532 aa  295  1e-78  Marinobacter aquaeolei VT8  Bacteria  normal  0.415489  n/a   
 
 
-
 
NC_013457  VEA_001512  aerotaxis sensor receptor protein  33.78 
 
 
516 aa  295  1e-78  Vibrio sp. Ex25  Bacteria  normal  0.961146  n/a   
 
 
-
 
NC_009831  Ssed_2690  methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor  35.88 
 
 
524 aa  293  8e-78  Shewanella sediminis HAW-EB3  Bacteria  normal  0.487789  normal 
 
 
-
 
NC_004347  SO_1385  methyl-accepting chemotaxis protein  38.21 
 
 
520 aa  292  1e-77  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_2808  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.37 
 
 
522 aa  288  2e-76  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2891  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.88 
 
 
522 aa  288  2e-76  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1282  methyl-accepting chemotaxis sensory transducer  36.47 
 
 
522 aa  287  2.9999999999999996e-76  Shewanella baltica OS185  Bacteria  normal  0.13527  n/a   
 
 
-
 
NC_009665  Shew185_3097  methyl-accepting chemotaxis sensory transducer  37.09 
 
 
522 aa  286  5e-76  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2726  methyl-accepting chemotaxis sensory transducer  35.77 
 
 
538 aa  286  5e-76  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_5286  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  38.72 
 
 
519 aa  286  5e-76  Delftia acidovorans SPH-1  Bacteria  normal  0.982796  normal 
 
 
-
 
NC_011663  Sbal223_1280  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.09 
 
 
522 aa  286  5e-76  Shewanella baltica OS223  Bacteria  normal  normal  0.160306 
 
 
-
 
NC_003910  CPS_4927  methyl-accepting chemotaxis protein/sensory box protein  34.42 
 
 
511 aa  286  5.999999999999999e-76  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3240  methyl-accepting chemotaxis sensory transducer  36.48 
 
 
533 aa  285  1.0000000000000001e-75  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2987  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.46 
 
 
522 aa  285  1.0000000000000001e-75  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_1238  methyl-accepting chemotaxis sensory transducer  36.47 
 
 
522 aa  285  2.0000000000000002e-75  Shewanella baltica OS155  Bacteria  normal  0.0615962  n/a   
 
 
-
 
NC_008700  Sama_0995  putative methyl-accepting chemotaxis sensory transducer  38.39 
 
 
517 aa  284  2.0000000000000002e-75  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3087  methyl-accepting chemotaxis sensory transducer  36.76 
 
 
522 aa  284  3.0000000000000004e-75  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1317  methyl-accepting chemotaxis sensory transducer  36.47 
 
 
522 aa  284  3.0000000000000004e-75  Shewanella baltica OS195  Bacteria  normal  normal  0.0176898 
 
 
-
 
NC_011663  Sbal223_3073  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.27 
 
 
522 aa  284  3.0000000000000004e-75  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.000000000166485 
 
 
-
 
NC_008577  Shewana3_1150  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.08 
 
 
522 aa  283  4.0000000000000003e-75  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1149  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.08 
 
 
522 aa  283  4.0000000000000003e-75  Shewanella sp. MR-4  Bacteria  normal  0.737349  normal 
 
 
-
 
NC_008322  Shewmr7_1220  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.08 
 
 
522 aa  283  5.000000000000001e-75  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3519  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.14 
 
 
514 aa  280  4e-74  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1621  methyl-accepting chemotaxis protein  33.65 
 
 
513 aa  273  5.000000000000001e-72  Colwellia psychrerythraea 34H  Bacteria  normal  0.113175  n/a   
 
 
-
 
NC_009831  Ssed_1987  methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor  32.77 
 
 
518 aa  269  7e-71  Shewanella sediminis HAW-EB3  Bacteria  normal  0.185607  normal  0.0170041 
 
 
-
 
NC_008345  Sfri_3219  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.74 
 
 
516 aa  270  7e-71  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.1353  n/a   
 
 
-
 
NC_009901  Spea_3023  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.52 
 
 
514 aa  269  8e-71  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0337  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  31.6 
 
 
517 aa  268  2e-70  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3295  methyl-accepting chemotaxis sensory transducer  36.23 
 
 
519 aa  268  2e-70  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0674  PAS  36.17 
 
 
544 aa  261  3e-68  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1363  PAS  33.21 
 
 
544 aa  260  4e-68  Dechloromonas aromatica RCB  Bacteria  normal  hitchhiker  0.000284571 
 
 
-
 
NC_011992  Dtpsy_2648  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.59 
 
 
520 aa  258  2e-67  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2113  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.07 
 
 
550 aa  254  2.0000000000000002e-66  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2577  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.2 
 
 
524 aa  254  3e-66  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2406  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.78 
 
 
566 aa  254  4.0000000000000004e-66  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4269  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.45 
 
 
556 aa  253  7e-66  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2247  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.58 
 
 
511 aa  253  7e-66  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0532  putative methyl-accepting chemotaxis sensory transducer  34.78 
 
 
523 aa  252  1e-65  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0374128 
 
 
-
 
NC_007947  Mfla_1933  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.73 
 
 
598 aa  251  2e-65  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5601  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.29 
 
 
551 aa  248  1e-64  Ralstonia eutropha JMP134  Bacteria  normal  0.510218  n/a   
 
 
-
 
NC_010002  Daci_2372  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.54 
 
 
579 aa  248  3e-64  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_3682  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.95 
 
 
552 aa  246  8e-64  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.0302709 
 
 
-
 
NC_007404  Tbd_1618  chemotaxis sensory transducer  33.88 
 
 
557 aa  245  9.999999999999999e-64  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.126465 
 
 
-
 
NC_007908  Rfer_0120  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.83 
 
 
519 aa  244  3.9999999999999997e-63  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2984  methyl-accepting chemotaxis sensory transducer, Pas/Pac sensor  36.52 
 
 
565 aa  243  3.9999999999999997e-63  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6942  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.31 
 
 
566 aa  242  1e-62  Burkholderia phytofirmans PsJN  Bacteria  normal  0.819674  normal 
 
 
-
 
NC_008391  Bamb_4714  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.39 
 
 
535 aa  241  2e-62  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1294  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.98 
 
 
575 aa  239  6.999999999999999e-62  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00873235 
 
 
-
 
NC_008391  Bamb_4715  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.15 
 
 
514 aa  239  1e-61  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0618  methyl-accepting chemotaxis protein  34.2 
 
 
583 aa  239  1e-61  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_5244  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.15 
 
 
514 aa  238  2e-61  Burkholderia ambifaria MC40-6  Bacteria  normal  0.362794  normal 
 
 
-
 
NC_009456  VC0395_0602  methyl-accepting chemotaxis protein  35.19 
 
 
536 aa  236  5.0000000000000005e-61  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
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