| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1987 |
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| Symbol | |
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| ID | 5612820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2402906 |
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| End bp | 2404462 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932871 |
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| Product | methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor |
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| Protein accession | YP_001473724 |
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| Protein GI | 157375124 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein
[COG2202] FOG: PAS/PAC domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.185607 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0170041 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAATC AGAATCAACC ACAACCAAAC GAAGTAACCT ACCCTGACAG TTACAAAATT
CTATCGACAA CGGATCTTAA TAGTCATATC ACTCACGTGA ACAGTGACTT CATACAGACA
TGTGGTTATG AGAAGTCTGA GCTGATTGGT AAACCTCACA ACATCATCAG ACATCCGGAT
ATGCCCAAGG CGGCGTTTAA GGATCTATGG CAAACGGTTC AAGGCGGTAG CTCCTGGATG
GGGCTGGTCA AGAATCGCTG CAAAGATGGC CGGTATTATT GGGTCAATGC TTTCGTCACA
CCGATAAAGC ACCAAGGCAA GATAACCGAG TATCAGTCAG TCAGGACCAA ACCGGAACCA
GAGCTGAAGG CAAGAGCCCA ATCCTGTTAT GAGCGTATCA ACGCAGGAAA AACAGTGACT
CCCAAGAATC GCCTCTCCAT CATTCCAGCC TTAGGTCTGA GTTGGGCGAT CTCATGTTTG
ATGTTCTATC TGACCACAAT TTCGACTATG CCAGTTTCCC TGGTCTTAAT TGCCCTTGGT
TTAATCAGCT TTTTACTCCC TTTGAATCGA TTAAACCAAC GACTTAGCCA TCTGATGAGC
ATGAGTAAAA AGGTTCATGA TAGCGCTCTG AATCAGGTTA TCTATACAGG CTACCAAGAT
GAGTTATCCC ATCTTGAATT GAGTCTGAGA ATGCAGAAAG CAGAGTGTCT TGCAATACTG
GGGCGCGTCA AAGACAGCGG TGAAGAGCTT CAGGAGAGCA TGGAGGAGCA AGATCAACAG
ACTCAATCCA ATCAAACCCA ATTAGTTGAA CAATCATCGA ACCTTGAACA GGTCGTCGTG
GCCATTGGTC AGATGAATGA GGCAGTTAAT GAGATAGCCC ATAACACGAC CAGCTCAGCC
GATGAGATAT CTACCTTGGT AGAAAAGATC CAAATGACAC AATCGGCACT AGAGACAAGC
CAGAAAACGA CCTCAGAGAT CACCGGCCTG TTAACTGAGT CCCAACAGTC AATCTCGGAT
CTCGAATTAC AGTGCGTGAA AGTAAAATCG GTATTGGAGG TCATTGATAG TCTGGCCCAG
CAGACAAACC TTCTGGCACT CAATGCGGCA ATCGAAGCCG CTCGCGCCGG TGAAGCCGGA
CGTGGTTTTG CCGTGGTTGC CGATGAGGTT CGAAGCCTGG CTAACCACTC GCAAACATCG
GCCCAGGAGA TCCAGTCCAT CATAGATACA TTAAGCGATA CAACGGCTCA GGCTGTCAGC
CAGATGCAAC AGAGCCACCA GTTGACATCA AAAAGTGTTC AATCGGATCA AATGTTATCT
GACAGCCTAC AATCTGTTAG TGAGGCACTG CACCAGATGG AAGCCAACGG AGAGCAAATT
GCCGTTGCAG CTGAAGAGCA ATCAACCGTG ATTAATCAAG TCTACGTCAG TGCGATGGAG
CTTGAATCCG GCACTAATAC TTTCAGACAA AATTGTGAGC ATGCAGCCAG CACCAGTCAG
GAAGTTACAG CTCAAAGTAG CAGACAGCTG GAGTTGGTAA AACAGTTTGA TAGCTAA
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| Protein sequence | MDNQNQPQPN EVTYPDSYKI LSTTDLNSHI THVNSDFIQT CGYEKSELIG KPHNIIRHPD
MPKAAFKDLW QTVQGGSSWM GLVKNRCKDG RYYWVNAFVT PIKHQGKITE YQSVRTKPEP
ELKARAQSCY ERINAGKTVT PKNRLSIIPA LGLSWAISCL MFYLTTISTM PVSLVLIALG
LISFLLPLNR LNQRLSHLMS MSKKVHDSAL NQVIYTGYQD ELSHLELSLR MQKAECLAIL
GRVKDSGEEL QESMEEQDQQ TQSNQTQLVE QSSNLEQVVV AIGQMNEAVN EIAHNTTSSA
DEISTLVEKI QMTQSALETS QKTTSEITGL LTESQQSISD LELQCVKVKS VLEVIDSLAQ
QTNLLALNAA IEAARAGEAG RGFAVVADEV RSLANHSQTS AQEIQSIIDT LSDTTAQAVS
QMQQSHQLTS KSVQSDQMLS DSLQSVSEAL HQMEANGEQI AVAAEEQSTV INQVYVSAME
LESGTNTFRQ NCEHAASTSQ EVTAQSSRQL ELVKQFDS
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