More than 300 homologs were found in PanDaTox collection
for query gene Ssed_1987 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_1987  methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor  100 
 
 
518 aa  1066    Shewanella sediminis HAW-EB3  Bacteria  normal  0.185607  normal  0.0170041 
 
 
-
 
NC_008345  Sfri_3219  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  61.34 
 
 
516 aa  619  1e-176  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.1353  n/a   
 
 
-
 
NC_009456  VC0395_0250  methyl-accepting chemotaxis protein  37.28 
 
 
518 aa  339  5.9999999999999996e-92  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4658  chemotaxis sensory transducer, Pas/Pac sensor  40.5 
 
 
529 aa  331  2e-89  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_4186  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.24 
 
 
526 aa  324  3e-87  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0582  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.09 
 
 
524 aa  321  1.9999999999999998e-86  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0583  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.02 
 
 
524 aa  319  7e-86  Shewanella sp. MR-4  Bacteria  normal  normal  0.344402 
 
 
-
 
NC_008322  Shewmr7_3447  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.02 
 
 
524 aa  319  7.999999999999999e-86  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3908  methyl-accepting chemotaxis sensory transducer  36.67 
 
 
524 aa  315  9.999999999999999e-85  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0543  methyl-accepting chemotaxis sensory transducer  36.67 
 
 
524 aa  314  1.9999999999999998e-84  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3725  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.67 
 
 
524 aa  314  1.9999999999999998e-84  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_3782  methyl-accepting chemotaxis sensory transducer  36.47 
 
 
524 aa  313  3.9999999999999997e-84  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_0584  methyl-accepting chemotaxis protein  36.03 
 
 
524 aa  310  2.9999999999999997e-83  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_3294  methyl-accepting chemotaxis sensory transducer  35.8 
 
 
524 aa  309  1.0000000000000001e-82  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001512  aerotaxis sensor receptor protein  37.95 
 
 
516 aa  307  3e-82  Vibrio sp. Ex25  Bacteria  normal  0.961146  n/a   
 
 
-
 
NC_009439  Pmen_4451  methyl-accepting chemotaxis sensory transducer  38.14 
 
 
531 aa  304  2.0000000000000002e-81  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3109  methyl-accepting chemotaxis sensory transducer  36.88 
 
 
522 aa  303  5.000000000000001e-81  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1648  aerotaxis receptor  35.34 
 
 
521 aa  303  6.000000000000001e-81  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_3770  aerotaxis receptor Aer  35.67 
 
 
521 aa  301  2e-80  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3735  PAS  35.58 
 
 
521 aa  301  2e-80  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.065462 
 
 
-
 
NC_008463  PA14_44300  aerotaxis receptor Aer  35.67 
 
 
521 aa  301  2e-80  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2111  aerotaxis receptor Aer-2  35.25 
 
 
521 aa  298  1e-79  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0317394 
 
 
-
 
NC_009512  Pput_3628  methyl-accepting chemotaxis sensory transducer  35.25 
 
 
521 aa  299  1e-79  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1653  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.25 
 
 
521 aa  299  1e-79  Pseudomonas putida GB-1  Bacteria  normal  0.976535  normal  0.292811 
 
 
-
 
NC_009901  Spea_1860  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.78 
 
 
524 aa  298  2e-79  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0337  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.92 
 
 
517 aa  296  7e-79  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1630  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.29 
 
 
521 aa  295  1e-78  Pseudomonas putida W619  Bacteria  normal  normal  0.814601 
 
 
-
 
NC_002947  PP_4521  aerotaxis receptor, putative  34.75 
 
 
521 aa  292  8e-78  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.53 
 
 
523 aa  291  2e-77  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_003910  CPS_1621  methyl-accepting chemotaxis protein  36.16 
 
 
513 aa  289  7e-77  Colwellia psychrerythraea 34H  Bacteria  normal  0.113175  n/a   
 
 
-
 
NC_010322  PputGB1_4027  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.76 
 
 
521 aa  289  8e-77  Pseudomonas putida GB-1  Bacteria  normal  0.664053  normal  0.0821551 
 
 
-
 
NC_009439  Pmen_1902  methyl-accepting chemotaxis sensory transducer  34.08 
 
 
521 aa  288  1e-76  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00326538  normal  0.948878 
 
 
-
 
NC_009512  Pput_1390  methyl-accepting chemotaxis sensory transducer  34.56 
 
 
534 aa  288  1e-76  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3595  methyl-accepting chemotaxis sensory transducer  34.34 
 
 
515 aa  286  5.999999999999999e-76  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3813  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.37 
 
 
521 aa  286  5.999999999999999e-76  Pseudomonas putida W619  Bacteria  normal  0.629648  normal  0.0156802 
 
 
-
 
NC_007492  Pfl01_1833  chemotaxis sensory transducer, Pas/Pac sensor  34.02 
 
 
521 aa  285  1.0000000000000001e-75  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.884809  normal 
 
 
-
 
NC_004347  SO_3404  methyl-accepting chemotaxis protein  36.78 
 
 
522 aa  285  2.0000000000000002e-75  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009439  Pmen_1800  methyl-accepting chemotaxis sensory transducer  33.96 
 
 
521 aa  284  2.0000000000000002e-75  Pseudomonas mendocina ymp  Bacteria  normal  0.258308  normal  0.504821 
 
 
-
 
NC_004578  PSPTO_2014  aerotaxis receptor  34.79 
 
 
521 aa  282  9e-75  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4927  methyl-accepting chemotaxis protein/sensory box protein  34.47 
 
 
511 aa  282  1e-74  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0580  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.2 
 
 
521 aa  281  2e-74  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0413099 
 
 
-
 
NC_009665  Shew185_1282  methyl-accepting chemotaxis sensory transducer  37.23 
 
 
522 aa  280  3e-74  Shewanella baltica OS185  Bacteria  normal  0.13527  n/a   
 
 
-
 
NC_007005  Psyr_3406  PAS  34.22 
 
 
521 aa  279  7e-74  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.387271  normal  0.671486 
 
 
-
 
NC_009052  Sbal_1238  methyl-accepting chemotaxis sensory transducer  37.79 
 
 
522 aa  279  7e-74  Shewanella baltica OS155  Bacteria  normal  0.0615962  n/a   
 
 
-
 
NC_009438  Sputcn32_2726  methyl-accepting chemotaxis sensory transducer  34.5 
 
 
538 aa  280  7e-74  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1317  methyl-accepting chemotaxis sensory transducer  37.23 
 
 
522 aa  278  2e-73  Shewanella baltica OS195  Bacteria  normal  normal  0.0176898 
 
 
-
 
NC_011663  Sbal223_3073  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.31 
 
 
522 aa  278  2e-73  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.000000000166485 
 
 
-
 
NC_010506  Swoo_3519  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.67 
 
 
514 aa  277  3e-73  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1214  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.58 
 
 
527 aa  277  3e-73  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3023  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.57 
 
 
514 aa  276  6e-73  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0995  putative methyl-accepting chemotaxis sensory transducer  34.62 
 
 
517 aa  275  1.0000000000000001e-72  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1220  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.39 
 
 
522 aa  275  1.0000000000000001e-72  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1149  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.4 
 
 
522 aa  275  2.0000000000000002e-72  Shewanella sp. MR-4  Bacteria  normal  0.737349  normal 
 
 
-
 
NC_009665  Shew185_3097  methyl-accepting chemotaxis sensory transducer  33.69 
 
 
522 aa  273  5.000000000000001e-72  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1150  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.19 
 
 
522 aa  273  6e-72  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1280  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.69 
 
 
522 aa  272  1e-71  Shewanella baltica OS223  Bacteria  normal  normal  0.160306 
 
 
-
 
NC_009997  Sbal195_3240  methyl-accepting chemotaxis sensory transducer  33.48 
 
 
533 aa  272  1e-71  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_0389  methyl-accepting chemotaxis sensory transducer  34.83 
 
 
419 aa  271  2.9999999999999997e-71  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3087  methyl-accepting chemotaxis sensory transducer  33.26 
 
 
522 aa  270  5e-71  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1385  methyl-accepting chemotaxis protein  33.91 
 
 
520 aa  268  1e-70  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_2690  methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor  32.51 
 
 
524 aa  269  1e-70  Shewanella sediminis HAW-EB3  Bacteria  normal  0.487789  normal 
 
 
-
 
NC_008789  Hhal_0974  methyl-accepting chemotaxis sensory transducer  33.14 
 
 
532 aa  268  2e-70  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03783  Methyl-accepting chemotaxis protein (PAS/PAC and MSP doamins)  32.34 
 
 
527 aa  268  2e-70  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_1125  methyl-accepting chemotaxis sensory transducer  32.86 
 
 
532 aa  268  2e-70  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3270  methyl-accepting chemotaxis sensory transducer  33.47 
 
 
532 aa  266  8.999999999999999e-70  Marinobacter aquaeolei VT8  Bacteria  normal  0.415489  n/a   
 
 
-
 
NC_008577  Shewana3_2987  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.7 
 
 
522 aa  265  1e-69  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2891  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.7 
 
 
522 aa  265  1e-69  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1196  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
522 aa  265  2e-69  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_2808  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.7 
 
 
522 aa  264  3e-69  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3481  methyl-accepting chemotaxis sensory transducer  32.56 
 
 
521 aa  264  3e-69  Pseudomonas putida F1  Bacteria  normal  normal  0.41765 
 
 
-
 
NC_010322  PputGB1_1888  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  32.35 
 
 
521 aa  262  1e-68  Pseudomonas putida GB-1  Bacteria  normal  0.378373  normal 
 
 
-
 
NC_002947  PP_2257  aerotaxis receptor Aer-1  33.19 
 
 
521 aa  261  3e-68  Pseudomonas putida KT2440  Bacteria  normal  0.215452  normal  0.0215353 
 
 
-
 
NC_009092  Shew_2577  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.68 
 
 
524 aa  257  4e-67  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2247  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  32.09 
 
 
511 aa  257  4e-67  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1618  chemotaxis sensory transducer  31.31 
 
 
557 aa  254  3e-66  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.126465 
 
 
-
 
NC_008700  Sama_0532  putative methyl-accepting chemotaxis sensory transducer  35.2 
 
 
523 aa  253  5.000000000000001e-66  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0374128 
 
 
-
 
NC_009654  Mmwyl1_3460  methyl-accepting chemotaxis sensory transducer  32.47 
 
 
520 aa  248  2e-64  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_0262  methyl-accepting chemotaxis sensory transducer  30.92 
 
 
524 aa  248  2e-64  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2159  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.54 
 
 
523 aa  247  3e-64  Shewanella loihica PV-4  Bacteria  normal  0.416992  normal  0.881373 
 
 
-
 
NC_010623  Bphy_4269  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  31.44 
 
 
556 aa  246  6.999999999999999e-64  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_3366  aerotaxis receptor  32.38 
 
 
506 aa  241  2e-62  Escherichia coli SMS-3-5  Bacteria  normal  0.775088  normal 
 
 
-
 
CP001509  ECD_02941  fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component  32.38 
 
 
506 aa  240  4e-62  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0629  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  32.38 
 
 
506 aa  240  4e-62  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3253  aerotaxis receptor  32.38 
 
 
506 aa  240  4e-62  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_02891  hypothetical protein  32.38 
 
 
506 aa  240  4e-62  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3527  methyl-accepting chemotaxis sensory transducer  32.09 
 
 
506 aa  239  5.999999999999999e-62  Enterobacter sp. 638  Bacteria  normal  normal  0.538358 
 
 
-
 
NC_009801  EcE24377A_3538  aerotaxis receptor  32.38 
 
 
506 aa  239  8e-62  Escherichia coli E24377A  Bacteria  normal  0.840702  n/a   
 
 
-
 
NC_011353  ECH74115_4385  aerotaxis receptor  32.18 
 
 
506 aa  239  9e-62  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.472426  normal 
 
 
-
 
NC_009456  VC0395_0602  methyl-accepting chemotaxis protein  35.47 
 
 
536 aa  238  2e-61  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0628  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  32.18 
 
 
506 aa  238  3e-61  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E3508  aerotaxis receptor  32.08 
 
 
506 aa  237  4e-61  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0839  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.73 
 
 
511 aa  236  6e-61  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0805  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.09 
 
 
511 aa  234  3e-60  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2984  methyl-accepting chemotaxis sensory transducer, Pas/Pac sensor  29.12 
 
 
565 aa  227  3e-58  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3295  methyl-accepting chemotaxis sensory transducer  31.86 
 
 
519 aa  226  5.0000000000000005e-58  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008785  BMASAVP1_A2685  methyl-accepting chemotaxis protein  30.88 
 
 
580 aa  225  1e-57  Burkholderia mallei SAVP1  Bacteria  normal  0.394636  n/a   
 
 
-
 
NC_008836  BMA10229_A2390  methyl-accepting chemotaxis protein  30.88 
 
 
580 aa  225  1e-57  Burkholderia mallei NCTC 10229  Bacteria  normal  0.790589  n/a   
 
 
-
 
NC_006348  BMA0264  methyl-accepting chemotaxis protein  30.88 
 
 
580 aa  225  1e-57  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2473  methyl-accepting chemotaxis protein  30.88 
 
 
580 aa  225  1e-57  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0760  aerotaxis sensor receptor  30.71 
 
 
583 aa  224  2e-57  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
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