| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2690 |
|---|
| Symbol | |
|---|
| ID | 5611803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3247167 |
|---|
| End bp | 3248741 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640933609 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor |
|---|
| Protein accession | YP_001474425 |
|---|
| Protein GI | 157375825 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein
[COG2202] FOG: PAS/PAC domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.487789 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAATA ATCAGCCTGT GACGCAAAAG GAAAAGACGC TAACCGATAA CTGTATCTTA
CTCTCTACGA CCGATCTCGA TGGCAACATT AAATATGCCA ACGAAGGGTT TACCAGTGTC
AGTGGTTACA GTTTCGACGA ATTACACCGC CAGCCTCACA ATTTGGTGCG ACATCCTGAT
ATGCCTGAAG CTGCATTCAA GTCGATGTGG GAGAGAATAA AACAGGGTAA GCCTTGGATT
GGGGTGGTGA AGAACCGCGC CAAGAGTGGT GACCATTATT GGGTAAATGC CTATGTGGCC
CCCGTTTATG AAGATGGAAA AATTCACGAA TACCAGTCTG TCAGAAGGAA GGCAACCGCC
GATCAAATTA ATAGTGCCAC GCGTATTTAT GCCGACTTAC AAGCTGGAAA GAAGCCTAAG
GCACTCAGCA AAGGGCTACT GGGGTTTAGT GGCAGGCTAT TTGTCTGTCT ACTGCTTACG
GTACTATTAA CTGCGGCACT TGCCAGTTAC TCGCCCCTTG TGGCAGTCAT TGCGGCCGCT
ATTTTCGGTG CTATCGGTTT GAAGCTTATT CTTGCGCCTT TTAATGCCTT GCTCGAGAAG
GCGGTGAATA TTATTGATGA CCCACTCGCT ACCGGGGTGT ATGCGGGCAG GCAAGATGAG
TTAGGCAAAA TCAGTTTTGC CCTGCAATTT CTCATTACCG AAACTGGCGG GGTAGTTGGG
CGTATGGCTG ATTCAGCCGG CTCAATCGAA GGGCTCAGTG GCAGTTTAAA CGATACGATA
TCCAATACCC GTGAACGCGC CGACAGCCAG AGTCAGCAGA CGAGCCAAGC CGCGACAGCC
ATGGAGGAGA TGAGCGCAAG CTTTGCCGAA GTGAGCAGTA ATATCCACAA TGCGGCCGAA
GAGATGGCAA CAAGCTATGA GTCGGCCGAG AAGGGGCATG AGAGGATGGA GATGGTGATT
GAAGCCATCA ATCAATTAAA TGATGAAGTC GGCAACTTCT CTACCGTTGT GGCTTCTATC
GAACAAGATA GTCAAGATAT CAATAATGTA CTCGAGGTCA TTCGCGGCAT TGCCGAGCAA
ACTAACTTAC TTGCCTTGAA CGCCGCTATC GAGGCTGCTC GAGCAGGGGA GTCGGGGCGT
GGGTTTGCCG TTGTGGCAGA TGAAGTGCGT CAACTTTCGA GTCGCACGAG CGAGTCGACC
TCTCATATCG AAACCATAGT GAGTAAATTC CGCGAGAGTA CGCTCAAGGC AACTCAAACC
ATGGAGTCTG GTCAACGCAA GGCGGAGCAG TCCGTAGGAC TAGCACAGCA GGTCGATGAG
TCTTTTGAGG AGTTACGCTC ATCGATAGGT AAGATGAATG TGATGAGTGA TGAAAATGCG
TCTGCCATGT CACAACAAAC CACCGTTGCG AATGATATCA GCCATTCTAT TCAGGTGATC
AATGAGTTGG CTCTGGAAAG TCTCGAACAG ACACAAGATG CGACGGAACG TGGCCAACAA
GTGTCGAGGT TGTCGGCTAA GACGCATAAT TTATCTAAAC AGTTTTGGCG CCAAAGTGTG
CAGAGAAACT ATTAA
|
|---|
| Protein sequence | MRNNQPVTQK EKTLTDNCIL LSTTDLDGNI KYANEGFTSV SGYSFDELHR QPHNLVRHPD
MPEAAFKSMW ERIKQGKPWI GVVKNRAKSG DHYWVNAYVA PVYEDGKIHE YQSVRRKATA
DQINSATRIY ADLQAGKKPK ALSKGLLGFS GRLFVCLLLT VLLTAALASY SPLVAVIAAA
IFGAIGLKLI LAPFNALLEK AVNIIDDPLA TGVYAGRQDE LGKISFALQF LITETGGVVG
RMADSAGSIE GLSGSLNDTI SNTRERADSQ SQQTSQAATA MEEMSASFAE VSSNIHNAAE
EMATSYESAE KGHERMEMVI EAINQLNDEV GNFSTVVASI EQDSQDINNV LEVIRGIAEQ
TNLLALNAAI EAARAGESGR GFAVVADEVR QLSSRTSEST SHIETIVSKF RESTLKATQT
MESGQRKAEQ SVGLAQQVDE SFEELRSSIG KMNVMSDENA SAMSQQTTVA NDISHSIQVI
NELALESLEQ TQDATERGQQ VSRLSAKTHN LSKQFWRQSV QRNY
|
|---|
| |