| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0532 |
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| Symbol | |
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| ID | 4602787 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 655435 |
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| End bp | 657006 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639779868 |
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| Product | putative methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_926412 |
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| Protein GI | 119773672 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein
[COG2202] FOG: PAS/PAC domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0374128 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCAACA ACCAACCCGT CACCCTCAGG GAAGTGGAGC TCGACAACGA GGCCATCATT
CTGTCAACCA CGGATCTGAA AGGGCGTATC AAGTACGTCA ATCAGGACTT CTGCAATATT
GCCGGTTTCC GGGAAGAGGA ACTGGTGCAT GAGCCGCACA ATCTCATCCG CCACCCCGAT
ATGCCACCCG CTGCATTCAA GATGCTCTGG AGTCGCATTC GCGAAGGGCG CCCCTGGATG
GGGTTGGTGA AAAACCGCTG CAAGAACGGG GACTATTACT GGGTCGATGC GTATGTCACC
CCCGTGTATG AAGATGGCGA AGTCCACGAA TACCAGTCGG TGCGCCGCAA GGTGAACGCC
AAGCACCGGG AGCGCGCCGA GTCCTTGTAT GCCGAGTTGG TGAAAGATCC TCAGCCCGCA
ATACTCAGAG ATAGTCGCTT TGGTGTGTGT GGCAAACTCA TGCTGTGGAT GGCCCTGATG
CTGGGAGTAT CGGCCGTTGC CGCACAGTGG TCTCTTTGGT TGGTGTTACT GCTGTTGCCC
ATTGCCCTCT TGGGTTGCCG TAGCTTATTG GCGCCGCTTC GAGAGCTTGC CAGTGAGGCT
CGCAGTATTA TTCAGGACCC CGTGGCCAGA GCGGTTTATA CAGGTCGGCG GGATGAAATT
GGTGACCTCA TGCTGGCCAT GCGCTTTATG ACCAATGAAA CCGGCGGTGT GATGGGGCGG
ATGGCAGATT CCACCGAGAC CATGGCGAAC CAAAGCAATG ATCTGCTTGA TGCCATCGCC
CGCAGCGCCG AACGGGCCGA CGGTCAGCGT CAGCAAACCC AGCAGGCCGC CGCTGCGGTG
GAAGAACTGC ACGTGAGTTT TGCCGAAGTC AAAGAACATA CACTGGCCGT GGTCAGCGAT
GTGGAACAAT GCCAAAGTGC CATGGGGCTT GGGCAACAGC AGCTGGCGGA GGTCGAACTG
GCCATGCAGC AGCTACAGCA CCAAATGAGT CTGTGCGATG CCGTTGTGCG TGAGATTGCC
AGCGACAGCC AGGCCATCAA TCAGGTGCTT GAAGTCATTG GCACCATAGC TGAGCAAACC
AATCTGCTCG CCCTCAATGC GGCAATCGAG GCGGCCCGTG CCGGTGAGTC CGGACGTGGT
TTTGCCGTGG TGGCCGATGA AGTGCGGCAG CTTTCAGGAC GTACCGGTGA GTCAACCGGA
CAGATAGAAG GCATAGTGCG TAAATTCCAG TCCAGTACGG CGAGGGCCGA AGCCAATCTG
GACAACAGTC AGCAGCAGCT TAAGACATTG GCAGCAAGAC TTGGACAGGT TCAGCAGGCC
TTTGGCGCGC TGGAAGGCGC CATCAATACC ATCAAATCTC TTTCCGACCA CAGTGCCCAT
GCCATGACAG AGCAGTCCAG TGCCGCAGGC AGTATCAGTG ACTCGCTGCA AACCATCAAT
GAACTTGCAG AAGCCGTGCT CAACCAATCC CGGGAGGCCG AGCAGTTGGG TGCCCGTATG
TCACGCCTTT CAAGTAAAAC CAGTGGCTTA TCCAAGCAGT TTTGGCAAAA AAGTGTGAGC
GGCCGAGACT AG
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| Protein sequence | MRNNQPVTLR EVELDNEAII LSTTDLKGRI KYVNQDFCNI AGFREEELVH EPHNLIRHPD
MPPAAFKMLW SRIREGRPWM GLVKNRCKNG DYYWVDAYVT PVYEDGEVHE YQSVRRKVNA
KHRERAESLY AELVKDPQPA ILRDSRFGVC GKLMLWMALM LGVSAVAAQW SLWLVLLLLP
IALLGCRSLL APLRELASEA RSIIQDPVAR AVYTGRRDEI GDLMLAMRFM TNETGGVMGR
MADSTETMAN QSNDLLDAIA RSAERADGQR QQTQQAAAAV EELHVSFAEV KEHTLAVVSD
VEQCQSAMGL GQQQLAEVEL AMQQLQHQMS LCDAVVREIA SDSQAINQVL EVIGTIAEQT
NLLALNAAIE AARAGESGRG FAVVADEVRQ LSGRTGESTG QIEGIVRKFQ SSTARAEANL
DNSQQQLKTL AARLGQVQQA FGALEGAINT IKSLSDHSAH AMTEQSSAAG SISDSLQTIN
ELAEAVLNQS REAEQLGARM SRLSSKTSGL SKQFWQKSVS GRD
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