| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3109 |
|---|
| Symbol | |
|---|
| ID | 5079749 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 3615458 |
|---|
| End bp | 3617026 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640500307 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001184621 |
|---|
| Protein GI | 146294197 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAAAA ATTTGCCCAT TACAGGAAAT GAAAGAACAT TTCCGAAGGA ACAGCAGCTT
ATTTCATCTA CTGATATTAA GGGCACTATC TTGCATTGTA ATGATGCATT TATCTCCATT
AGTGGTTTTA GTCGTGAAGA GTTAGTTGGC AAACCCCATA ACATAGTTCG ACATCCTGAT
ATGCCTGAAG CGGCATTTAA GACGATGTGG AGCTATTTAC AGCAGGGCAA ACCTTGGATG
GGGCTTGTAA AAAACCGCTG TAAGAATGGG GATTATTATT GGGTTAATGC CTATGTGACT
CCAGTGACGG AACATGGACG TGTAGTGGGG TATGAATCGG TTCGCTCTGT CCCAAGCCGA
GAGCAGGTAG CCCATGCAGA GCGTTTATAC ACGGCAATCA ATGCAGGAAA AAATCCTCAA
AGCAGTCTTT CAACCCTGAT GGCTAATCTT CGTTGGGTAA GCCTACCTGC GATCGCTATG
ATTATTTCAT TACTGTTATG GTGGCGATTA GGCCCAACAG AAGCGTCTAT TGCTTTTCTT
ATCACAGCGT TACTTAGCTA TGGTTTGGGA GTATATCGTT TAAACAGCAC TCTTACTCAC
CTTGTGGAAT TACTGCCAAC CCCTTTTACC GACCCACTTG CAGTTGCTTC CTATGCAAAA
CATCGTGGAA TATTGGGGCA ATTGGAGGTT GCGGTATTAG CGGAATCAGC CCATTTAAAT
ACAGTGTTAA CTCGGATCGA AGATGCCTCG ACTAAAGTGG CCTCACAATC GGATCAAGTG
ATGCATTTAT CTGTAGAATC AACGGACTGT ATCCGTAAGC AGCAAGTGCA AACAGAACAA
GTTGCGACCG CCATGAATCA GATGACGACA ACGATTGCTG AAATATCGTC ACATGTGCAG
GATACCGCAA CCAAAGCCAG CGATGTTGAT GCGTTAGCCT GTTCAGGTTC TGCGGTGGCA
GGACAAACAC GTAGTGCAAT GCAGCAGCTA CAAAAAACCG TCAATGATAT TAGCCAGTCG
GTGGCGGATC TTGCTGATCA GACTGATAAA ATTGTGGGCG CGGCACAATT AATTGAACAG
ATCGCCGAAC AAACCAACTT ACTTGCCCTT AATGCTGCAA TTGAGGCTGC AAGAGCAGGT
GATCAAGGCC GAGGCTTTGC TGTGGTCGCC GATGAAGTGA GGCTGCTCGC GTCGCGAACC
ACCGCATCAA CTAAAGAGAT TTACGATATT ATTCAACTAC TTTCGACCAA AGCTAAAGCC
TCAGTATTGA TTGCTCAAAA TGGATGTAAA GATACTGAAC AGGGGGTTGC TCAAGTCGGA
TTAGCTGAAA AGGCATTAGA AGGCATTAGT GTTGCAGTGA CGAGTATCGC CACTATGGCG
GTGCAAATGG CTTCTGCGGT GGAAGAACAA GCCCATGTTG CTGAAGATAT TAATCAACAA
ATTGTGATTA TTTCTGAGCT TGCCAGTACT TCATTAGAGC AAGGCACAGA GGTCAGTGAA
AGTGGCAAAA ATCTACAAAT GACATCAGAA CAATTGCACG AGCTGGTAGA GCGCTTCCGT
AAGGTATGA
|
|---|
| Protein sequence | MRKNLPITGN ERTFPKEQQL ISSTDIKGTI LHCNDAFISI SGFSREELVG KPHNIVRHPD
MPEAAFKTMW SYLQQGKPWM GLVKNRCKNG DYYWVNAYVT PVTEHGRVVG YESVRSVPSR
EQVAHAERLY TAINAGKNPQ SSLSTLMANL RWVSLPAIAM IISLLLWWRL GPTEASIAFL
ITALLSYGLG VYRLNSTLTH LVELLPTPFT DPLAVASYAK HRGILGQLEV AVLAESAHLN
TVLTRIEDAS TKVASQSDQV MHLSVESTDC IRKQQVQTEQ VATAMNQMTT TIAEISSHVQ
DTATKASDVD ALACSGSAVA GQTRSAMQQL QKTVNDISQS VADLADQTDK IVGAAQLIEQ
IAEQTNLLAL NAAIEAARAG DQGRGFAVVA DEVRLLASRT TASTKEIYDI IQLLSTKAKA
SVLIAQNGCK DTEQGVAQVG LAEKALEGIS VAVTSIATMA VQMASAVEEQ AHVAEDINQQ
IVIISELAST SLEQGTEVSE SGKNLQMTSE QLHELVERFR KV
|
|---|
| |