| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4027 |
|---|
| Symbol | |
|---|
| ID | 5871827 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 4478495 |
|---|
| End bp | 4480060 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641549155 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
|---|
| Protein accession | YP_001670253 |
|---|
| Protein GI | 167035022 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.664053 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0821551 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATGA ATTTGCCCGT CACTGAGCAC GAAAGAACCT TCTCTAGCGA TCAACGCCTG
ATTTCCACCA CGGACCTCAA CAGCCGCATC ACCTACTGCA ATGACGCCTT TGTGGCGATC
AGCGGTTTTA CCTACGACGA GCTGGTCGGC CAACCGCACA ACCTGGTGCG CCACCCAGAT
ATGCCACCGG CGGTGTTCGG CCATATGTGG GAGACGATCA AGCAGGGCAA GCCGTGGATG
GGGGTGGTCA AGAACCGGGC GAAGAATGGC GATTACTACT GGGTCAGCGC CTACGTCACG
GCGATTTACG AACAAGGCCG CATCAGTGGC TACGAGTCAG TACGCTCGGT GCCCACAAGG
GACCAGATTC GCCGTGCCGA AGCGCTGTAC GCGCGCTTGC GCGATGGGCG CGGGCCGGTG
CCGTGGGCGG CTCGCCTGGG GCACGGTCTG GGCCATGGCT GGCCACTGAT CGGCGCAGGC
CTGGTGTCGG CGGCGGGTTA CCTATGGCTA CCGCCCTATG CGGCGCTTGG TGTACTGATG
GCCAGCTTGC TGCTGGCCTG GTACCTGATC GAGCACCGGC AGAACCAGGT CATCCGCCGC
ACGCTGGCTG AGCACCCCAA GGCCTTTACC AGCCCGTTGG TGGCGTTGAC CTACAGCGAC
AATCCAGGCC TGCAAGGCCA GCTTGACCTG GCCATCATCA GCGAGGAAGC ACGCCTGCAA
ACGGCCCTCA CCCGGCTTGT GGATGCCGGG GTCGGGGTGA AGTCGCGGGC GGCGCAATCT
TCCGATCTGT CCGATGCCCA GGCGCAGATG CTCGACCGCC AGCGCAGCGA AACCGATCAG
TCGGCCACGG CCATTGCGCA AATGGCGGCC ACCATCCAGC AGGTTACCCA CAACGTGCAG
AGCACGGCGC ATGCGGCGGG TGATGCCGAT CAATTGGCGC AGCAGGGTAG CGAGCTGGCG
CTGCAGAGCC TGAAAGCCAT GGGCAGCATG AGCGATGCGG TCAATGACAT TGGCCAGGCA
GTGAATGCCC TGGCAGAGCA AACCCAGTCG ATAGGCAGCG TGGTCGACGT GATCACCTCG
ATTGCCGAGC AGACCAACCT GCTGGCGCTT AATGCCGCCA TTGAAGCGGC GCGTGCCGGC
GAACAGGGGC GCGGGTTTGC CGTGGTGGCT GATGAGGTGC GTTCGTTGGC CCAGCGCACC
CGCGCTTCGA CCAGCGAGAT TCATCACATT ATCGCCTCCT TGCGGGCCGG GGCAGAGCGG
GCAGTGAGCA CCGCCAGCCG GGGCGAGCAG ATCTCTCGGG ACAGCGTGCA CAGTGTCGAG
GCAGTGCAGG CGGCGCTGAG CGGGATTGCC CAGGCGGTCA GTCGCATCAC CGGCATGAGC
CAGCAGATGG CGACGGCATC GGAGCAGCAA AGCCATGTGG CCGAGGACAT CAACCAGCAG
ATCGTGAGGA TTGCCCAACT GTGTGACCAG AGTGCCGGGC AGGCCAGGCA GGGCGCGCAG
ATCAGCCAGG ACCTGGAGCG CATGGCGGAG TACCTGCATA GCCTGGCGGA GCGGTTCAAC
CGCTGA
|
|---|
| Protein sequence | MRMNLPVTEH ERTFSSDQRL ISTTDLNSRI TYCNDAFVAI SGFTYDELVG QPHNLVRHPD
MPPAVFGHMW ETIKQGKPWM GVVKNRAKNG DYYWVSAYVT AIYEQGRISG YESVRSVPTR
DQIRRAEALY ARLRDGRGPV PWAARLGHGL GHGWPLIGAG LVSAAGYLWL PPYAALGVLM
ASLLLAWYLI EHRQNQVIRR TLAEHPKAFT SPLVALTYSD NPGLQGQLDL AIISEEARLQ
TALTRLVDAG VGVKSRAAQS SDLSDAQAQM LDRQRSETDQ SATAIAQMAA TIQQVTHNVQ
STAHAAGDAD QLAQQGSELA LQSLKAMGSM SDAVNDIGQA VNALAEQTQS IGSVVDVITS
IAEQTNLLAL NAAIEAARAG EQGRGFAVVA DEVRSLAQRT RASTSEIHHI IASLRAGAER
AVSTASRGEQ ISRDSVHSVE AVQAALSGIA QAVSRITGMS QQMATASEQQ SHVAEDINQQ
IVRIAQLCDQ SAGQARQGAQ ISQDLERMAE YLHSLAERFN R
|
|---|
| |