More than 300 homologs were found in PanDaTox collection
for query gene Phep_1164 on replicon NC_013061
Organism: Pedobacter heparinus DSM 2366



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_003295  RSc0237  putative methylmalonyl-CoA mutase protein  59.21 
 
 		 1099 aa  1317    Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  0.556775 
 
 
-
 
NC_007298  Daro_0243  methylmalonyl-CoA mutase, N-terminal:methylmalonyl-CoA mutase, C-terminal  59.98 
 
 		 1116 aa  1330    Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_3844  methylmalonyl-CoA mutase, large subunit  59.89 
 
 		 1096 aa  1332    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_007333  Tfu_2811  methylmalonyl-CoA mutase, N-terminal  56.28 
 
 		 1080 aa  1244    Thermobifida fusca YX  Bacteria  normal  0.153738  n/a   
 
 
-
 
NC_007347  Reut_A0253  methylmalonyl-CoA mutase, N-terminal:methylmalonyl-CoA mutase, C-terminal  58.41 
 
 		 1093 aa  1310    Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_007484  Noc_1893  methylmalonyl-CoA mutase-like  55.65 
 
 		 1139 aa  1255    Nitrosococcus oceani ATCC 19707  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_3448  methylmalonyl-CoA mutase, large subunit  63.58 
 
 		 1086 aa  1454    Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007517  Gmet_1722  methylmalonyl-CoA mutase-like  62 
 
 		 1082 aa  1402    Geobacter metallireducens GS-15  Bacteria  normal  0.181913  normal  0.685956 
 
 
-
 
NC_012793  GWCH70_3339  methylmalonyl-CoA mutase, large subunit  63.55 
 
 		 1085 aa  1440    Geobacillus sp. WCH70  Bacteria  normal  1  n/a   
 
 
-
 
NC_009441  Fjoh_2332  methylmalonyl-CoA mutase  71.38 
 
 		 1146 aa  1682    Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_2289  Methylmalonyl-CoA mutase  59.65 
 
 		 1144 aa  1335    Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  0.0243844 
 
 
-
 
NC_007777  Francci3_3652  methylmalonyl-CoA mutase  55.05 
 
 		 1105 aa  1231    Frankia sp. CcI3  Bacteria  normal  0.587052  normal  1 
 
 
-
 
NC_009921  Franean1_1077  methylmalonyl-CoA mutase, large subunit  53.83 
 
 		 1133 aa  1198    Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.953537 
 
 
-
 
NC_013730  Slin_2256  Methylmalonyl-CoA mutase  70 
 
 		 1110 aa  1633    Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.642899 
 
 
-
 
NC_007908  Rfer_3612  methylmalonyl-CoA mutase  59.34 
 
 		 1113 aa  1338    Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_010682  Rpic_0089  methylmalonyl-CoA mutase, large subunit  58.96 
 
 		 1095 aa  1316    Ralstonia pickettii 12J  Bacteria  normal  0.571974  normal  1 
 
 
-
 
NC_007948  Bpro_4054  methylmalonyl-CoA mutase  58.7 
 
 		 1139 aa  1319    Polaromonas sp. JS666  Bacteria  normal  0.632309  normal  0.527832 
 
 
-
 
NC_007951  Bxe_A4277  methylmalonyl-CoA mutase  56.32 
 
 		 1272 aa  1101    Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.0862944 
 
 
-
 
NC_007973  Rmet_0210  methylmalonyl-CoA mutase  59.68 
 
 		 1093 aa  1334    Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009943  Dole_2188  methylmalonyl-CoA mutase, large subunit  57.44 
 
 		 1086 aa  1291    Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00063386  n/a   
 
 
-
 
NC_009675  Anae109_3169  methylmalonyl-CoA mutase, large subunit  58.26 
 
 		 1097 aa  1295    Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_3556  Methylmalonyl-CoA mutase  57.52 
 
 		 1073 aa  1272    Streptosporangium roseum DSM 43021  Bacteria  normal  0.0534628  normal  0.668167 
 
 
-
 
NC_010681  Bphyt_0431  methylmalonyl-CoA mutase, large subunit  63.38 
 
 		 1298 aa  828    Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012918  GM21_1375  methylmalonyl-CoA mutase, large subunit  61.77 
 
 		 1082 aa  1422    Geobacter sp. M21  Bacteria  n/a    normal  0.0491198 
 
 
-
 
NC_014165  Tbis_1618  methylmalonyl-CoA mutase large subunit  57.22 
 
 		 1083 aa  1256    Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013757  Gobs_2225  methylmalonyl-CoA mutase, large subunit  54.87 
 
 		 1077 aa  1193    Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.552157  n/a   
 
 
-
 
NC_013510  Tcur_1029  methylmalonyl-CoA mutase, large subunit  58.01 
 
 		 1081 aa  1286    Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_009483  Gura_1342  methylmalonyl-CoA mutase, large subunit  60.5 
 
 		 1115 aa  1405    Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_008699  Noca_4143  methylmalonyl-CoA mutase, large subunit  48.95 
 
 		 1043 aa  651    Nocardioides sp. JS614  Bacteria  normal  0.578246  n/a   
 
 
-
 
NC_013132  Cpin_1068  Methylmalonyl-CoA mutase  72.01 
 
 		 1108 aa  1682    Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012856  Rpic12D_0095  methylmalonyl-CoA mutase, large subunit  59.12 
 
 		 1095 aa  1325    Ralstonia pickettii 12D  Bacteria  normal  0.778156  normal  0.758233 
 
 
-
 
NC_010622  Bphy_0156  methylmalonyl-CoA mutase, large subunit  56.79 
 
 		 1127 aa  1287    Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.308187 
 
 
-
 
NC_008781  Pnap_3524  methylmalonyl-CoA mutase, large subunit  59.77 
 
 		 1097 aa  1328    Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008825  Mpe_A0903  methylmalonyl-CoA mutase  59.11 
 
 		 1096 aa  1323    Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014230  CA2559_06870  methylmalonyl-CoA mutase  70.22 
 
 		 1139 aa  1673    Croceibacter atlanticus HTCC2559  Bacteria  normal  1  n/a   
 
 
-
 
NC_011662  Tmz1t_3371  methylmalonyl-CoA mutase, large subunit  61.16 
 
 		 1088 aa  1350    Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_013061  Phep_1164  Methylmalonyl-CoA mutase  100 
 
 		 1131 aa  2341    Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011146  Gbem_2838  methylmalonyl-CoA mutase, large subunit  61.24 
 
 		 1082 aa  1422    Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_013159  Svir_24570  methylmalonyl-CoA mutase family protein  56.18 
 
 		 1079 aa  1221    Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  0.990884 
 
 
-
 
NC_013093  Amir_2277  methylmalonyl-CoA mutase, large subunit  55.53 
 
 		 1092 aa  1228    Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013501  Rmar_0923  Methylmalonyl-CoA mutase  62.5 
 
 		 1150 aa  1457    Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_0281  methylmalonyl-CoA mutase, large subunit  33.98 
 
 		 549 aa  283  1e-74  Anaeromyxobacter sp. Fw109-5  Bacteria  decreased coverage  0.000219849  normal  0.200381 
 
 
-
 
NC_009767  Rcas_4326  methylmalonyl-CoA mutase, large subunit  34.45 
 
 		 563 aa  282  2e-74  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.273661  normal  1 
 
 
-
 
NC_013926  Aboo_1362  methylmalonyl-CoA mutase, large subunit  33.71 
 
 		 559 aa  282  3e-74  Aciduliprofundum boonei T469  Archaea  hitchhiker  0.0000000005041  n/a   
 
 
-
 
NC_009483  Gura_0654  methylmalonyl-CoA mutase, large subunit  32.12 
 
 		 551 aa  281  4e-74  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000145738  n/a   
 
 
-
 
NC_012918  GM21_0572  methylmalonyl-CoA mutase, large subunit  32.67 
 
 		 550 aa  277  9e-73  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000000115409 
 
 
-
 
NC_013946  Mrub_0930  methylmalonyl-CoA mutase large subunit  33.98 
 
 		 518 aa  271  4e-71  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  0.380206 
 
 
-
 
NC_013739  Cwoe_0843  methylmalonyl-CoA mutase, large subunit  31.74 
 
 		 550 aa  270  1e-70  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  0.511417 
 
 
-
 
NC_010718  Nther_1486  methylmalonyl-CoA mutase  32.09 
 
 		 559 aa  269  2e-70  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  0.220657 
 
 
-
 
NC_013202  Hmuk_2889  methylmalonyl-CoA mutase, large subunit  33.75 
 
 		 560 aa  266  2e-69  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.0576126  normal  0.895278 
 
 
-
 
NC_013440  Hoch_3688  methylmalonyl-CoA mutase, large subunit  32.51 
 
 		 537 aa  265  3e-69  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  0.0115893 
 
 
-
 
NC_013525  Tter_1672  methylmalonyl-CoA mutase, large subunit  31.79 
 
 		 570 aa  262  2e-68  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007760  Adeh_0259  methylmalonyl-CoA mutase  33.63 
 
 		 549 aa  263  2e-68  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.101753  n/a   
 
 
-
 
NC_011891  A2cp1_0281  methylmalonyl-CoA mutase, large subunit  33.8 
 
 		 549 aa  263  2e-68  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  decreased coverage  0.0034305  n/a   
 
 
-
 
NC_011145  AnaeK_0270  methylmalonyl-CoA mutase, large subunit  33.63 
 
 		 549 aa  261  4e-68  Anaeromyxobacter sp. K  Bacteria  normal  1  n/a   
 
 
-
 
NC_013522  Taci_0288  methylmalonyl-CoA mutase, large subunit  32.45 
 
 		 559 aa  260  1e-67  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  1  n/a   
 
 
-
 
NC_013131  Caci_0774  methylmalonyl-CoA mutase, large subunit  32.33 
 
 		 527 aa  259  3e-67  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.817325  normal  0.286297 
 
 
-
 
NC_014212  Mesil_1549  methylmalonyl-CoA mutase, large subunit  32.5 
 
 		 529 aa  258  4e-67  Meiothermus silvanus DSM 9946  Bacteria  normal  0.815883  normal  1 
 
 
-
 
NC_002939  GSU3302  methylmalonyl-CoA mutase, putative  31.73 
 
 		 552 aa  255  3e-66  Geobacter sulfurreducens PCA  Bacteria  unclonable  0.00398466  n/a   
 
 
-
 
NC_013739  Cwoe_5523  methylmalonyl-CoA mutase, large subunit  30.32 
 
 		 537 aa  252  3e-65  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010320  Teth514_1855  methylmalonyl-CoA mutase, large subunit  38.32 
 
 		 560 aa  244  5e-63  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_010085  Nmar_0954  methylmalonyl-CoA mutase large subunit  38.2 
 
 		 532 aa  243  1e-62  Nitrosopumilus maritimus SCM1  Archaea  n/a    hitchhiker  0.00417375 
 
 
-
 
NC_012029  Hlac_1182  methylmalonyl-CoA mutase, large subunit  31.61 
 
 		 566 aa  241  5.999999999999999e-62  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  1  hitchhiker  0.00000166 
 
 
-
 
NC_009943  Dole_0079  methylmalonyl-CoA mutase  32.16 
 
 		 706 aa  241  5.999999999999999e-62  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.373309  n/a   
 
 
-
 
NC_009972  Haur_3380  methylmalonyl-CoA mutase, large subunit  32.23 
 
 		 559 aa  241  8e-62  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_008609  Ppro_0523  methylmalonyl-CoA mutase, large subunit  29.54 
 
 		 551 aa  239  2e-61  Pelobacter propionicus DSM 2379  Bacteria  unclonable  0.000000113835  n/a   
 
 
-
 
NC_012029  Hlac_1016  methylmalonyl-CoA mutase, large subunit  30.92 
 
 		 558 aa  238  5.0000000000000005e-61  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.172359  normal  1 
 
 
-
 
NC_013743  Htur_1992  methylmalonyl-CoA mutase, large subunit  38.54 
 
 		 560 aa  237  8e-61  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_009523  RoseRS_0214  methylmalonyl-CoA mutase, large subunit  38.16 
 
 		 557 aa  237  9e-61  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009483  Gura_3481  methylmalonyl-CoA mutase, large subunit  36.19 
 
 		 551 aa  237  9e-61  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_008699  Noca_2131  methylmalonyl-CoA mutase  30.34 
 
 		 569 aa  236  1.0000000000000001e-60  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_013922  Nmag_0558  methylmalonyl-CoA mutase, large subunit  38.54 
 
 		 560 aa  236  1.0000000000000001e-60  Natrialba magadii ATCC 43099  Archaea  normal  1  n/a   
 
 
-
 
NC_013131  Caci_1274  methylmalonyl-CoA mutase, large subunit  37.73 
 
 		 563 aa  236  2.0000000000000002e-60  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008148  Rxyl_1283  methylmalonyl-CoA mutase  37.33 
 
 		 531 aa  236  2.0000000000000002e-60  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_007517  Gmet_3251  methylmalonyl-CoA mutase  29.12 
 
 		 552 aa  233  1e-59  Geobacter metallireducens GS-15  Bacteria  normal  0.34428  hitchhiker  0.00000000000000179062 
 
 
-
 
NC_008576  Mmc1_0388  methylmalonyl-CoA mutase  31.36 
 
 		 714 aa  233  1e-59  Magnetococcus sp. MC-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010814  Glov_3260  methylmalonyl-CoA mutase, large subunit  31.54 
 
 		 713 aa  233  2e-59  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_6260  methylmalonyl-CoA mutase, large subunit  36.71 
 
 		 517 aa  233  2e-59  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  0.593051 
 
 
-
 
NC_009616  Tmel_1860  methylmalonyl-CoA mutase, large subunit  38.32 
 
 		 559 aa  233  2e-59  Thermosipho melanesiensis BI429  Bacteria  decreased coverage  0.0000937746  n/a   
 
 
-
 
NC_008254  Meso_0856  methylmalonyl-CoA mutase  31.18 
 
 		 714 aa  232  3e-59  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010003  Pmob_0549  methylmalonyl-CoA mutase, large subunit  30.46 
 
 		 559 aa  231  5e-59  Petrotoga mobilis SJ95  Bacteria  normal  1  n/a   
 
 
-
 
NC_008025  Dgeo_1320  methylmalonyl-CoA mutase  31.31 
 
 		 722 aa  230  9e-59  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_0726  methylmalonyl-CoA mutase  31.57 
 
 		 712 aa  229  2e-58  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.999011  normal  1 
 
 
-
 
CP001509  ECD_02748  methylmalonyl-CoA mutase  32.38 
 
 		 714 aa  229  3e-58  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
NC_009801  EcE24377A_3244  methylmalonyl-CoA mutase  32.38 
 
 		 714 aa  229  3e-58  Escherichia coli E24377A  Bacteria  normal  0.98625  n/a   
 
 
-
 
NC_010468  EcolC_0793  methylmalonyl-CoA mutase  32.38 
 
 		 714 aa  229  3e-58  Escherichia coli ATCC 8739  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009800  EcHS_A3075  methylmalonyl-CoA mutase  32.38 
 
 		 714 aa  228  3e-58  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_012892  B21_02711  hypothetical protein  32.38 
 
 		 714 aa  229  3e-58  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_010498  EcSMS35_3053  methylmalonyl-CoA mutase  32.21 
 
 		 714 aa  228  4e-58  Escherichia coli SMS-3-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011353  ECH74115_4213  methylmalonyl-CoA mutase  32.21 
 
 		 714 aa  228  5.0000000000000005e-58  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009718  Fnod_1752  methylmalonyl-CoA mutase, large subunit  38.04 
 
 		 554 aa  228  5.0000000000000005e-58  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007794  Saro_0811  methylmalonyl-CoA mutase  31.57 
 
 		 714 aa  227  9e-58  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.251875  n/a   
 
 
-
 
CP001637  EcDH1_0776  methylmalonyl-CoA mutase, large subunit  32.21 
 
 		 714 aa  227  1e-57  Escherichia coli DH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_014212  Mesil_1720  methylmalonyl-CoA mutase, large subunit  31.64 
 
 		 551 aa  227  1e-57  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013169  Ksed_22170  methylmalonyl-CoA mutase  30.8 
 
 		 754 aa  226  2e-57  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.366718  normal  0.398515 
 
 
-
 
NC_013525  Tter_1622  methylmalonyl-CoA mutase, large subunit  36.46 
 
 		 521 aa  226  2e-57  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013411  GYMC61_0279  methylmalonyl-CoA mutase  31.68 
 
 		 731 aa  226  2e-57  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013202  Hmuk_2165  methylmalonyl-CoA mutase, large subunit  35.17 
 
 		 567 aa  226  3e-57  Halomicrobium mukohataei DSM 12286  Archaea  normal  1  normal  1 
 
 
-
 
NC_008009  Acid345_1023  methylmalonyl-CoA mutase  36.78 
 
 		 542 aa  225  3e-57  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  0.85938 
 
 
-
 
NC_008825  Mpe_A1014  methylmalonyl-CoA mutase  30.97 
 
 		 719 aa  225  4e-57  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  0.856859 
 
 
-
 
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