| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_4143 |
|---|
| Symbol | |
|---|
| ID | 4596657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | + |
|---|
| Start bp | 4375027 |
|---|
| End bp | 4378158 |
|---|
| Gene Length | 3132 bp |
|---|
| Protein Length | 1043 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639778749 |
|---|
| Product | methylmalonyl-CoA mutase, large subunit |
|---|
| Protein accession | YP_925327 |
|---|
| Protein GI | 119718362 |
|---|
| COG category | [E] Amino acid transport and metabolism
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1703] Putative periplasmic protein kinase ArgK and related GTPases of G3E family
[COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.578246 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCCC TGCACGTCCC GCAGCACCCG GTCCGCCTGG TGACCGCATC CAGCCTCTTC
GACGGCCACG ACGCGGCCAT CAACATCATG CGGCGGATCT TCCAGTCGCA GGGCTGCGAG
GTCATCCACC TCGGCCACAA CCGCTCGGTT CAGGAGGTCG TCGACGCCGC GATCGAGGAG
GACGTCCAGG GCGTCGCGGT GTCGTCGTAC CAGGGTGGCC ACGTCGAGTA CTTCGAGTAC
CTCGTCGAGC TGCTGCGCGC GCAGGGCGCC GGTCACATCC GGGTCGTGGG GGGTGGCGGC
GGCGTCATCG TGCGCGACGA GATCGACCGG CTCCGCGCCA GCGGCGTCAC GATCTTCTCG
CCGGAGGACG GCCAGCGGAT GGGCCTGCCC GGGATGATCA ACTCCGTGGT CGCCTCGTGC
GACGTGGACC TGTGGGCCGA CCGCCAGGTC GGCGCCGACC AGCTGCTCAG CGGCGACCGG
TTCGCGGTCG CGCGCGCGAT CACCGCGGCC GAGGAGGGGC GCCTGCCCGA GGAGCTGCTG
GCCGCGGTGC GGAGCGCCGC CGGCGCCCGG ACCGTCCCGG TCCTCGGCAT CACCGGCACC
GGCGGCTCGG GCAAGTCCTC GCTGACCGAC GAGCTCGTGC GTCGCTTCCG GGTCGACCAG
CAGAACAAGC TGCGGGTGGC GGTCGTCGCC GTCGACCCGA CCCGGCGCAA GGGCGGCGGC
GCCCTGCTCG GCGACCGGAT CCGGATGAAC TCCCTCGACG GCGACCGGAT CTTCTTCCGC
TCCCTCGCCA CCCGCGGCGC CCACGAGCTG CCCGAGCATC TGCCCGACGT GATCGAGGTG
CTCAAGGCCG GTGGCTTCGA CCTGGTGATC GTCGAGACCC CCGGCATCGG CCAGGGCGAT
GCCGGGGTCG TGCCGTTCGT CGACGCCTCG CTGTACGTGA TGACGCCGGA GTTCGGTGCG
GCCTCCCAGC TGGAGAAGAT CGACATGCTC GACTTCGCCG ACGTCGTGGC GATCAACAAG
TTCGAGCGCC GCGGGGCCGC GGACGCACTG CGCGACGTCG GGCGCCAGCT GGTCCGCAAC
CGTGAGGCGT TCGGCAAGGG GCCCGACCAG ATGCCCGTGT ACGGGACGTC GGCGGCCACA
TTCAACGACG ACGGCGTGAC CGCCCTGTAC CAGCAGCTCC GCGACCTGCT GGCCGACCGC
GGGCTGCCGG TCGCCGAGGG CGTGCTCGAG CACGTCGACG TGCGGCACTC GACCCGCATC
CAGCAGGTGC TCCCGGGTGA GCGGGTCCGC TACCTCGCGG AGGTGAGCAC CACCGTCCGG
GACTACCACG CGCGGACCAC TGTCCTGGCG GACGCGGCGC GACGGGTGCA GCGGCTCGAG
GCCGTCGCGG CCGAGCTTCC TGGCAACGAC GACGTCGCCG GGCTGCTCGT GAAGGCACGC
GGCGAGCTGC CCGAGGAGGT CGCCGGCCAG CTGGCCGACT GGCCCGCGGT GGTCGAGGAG
TACGCCGCCG TCGAAGGCCG CACCTCCTTG TCGGGCAACG TGATCCCGCG GGTCGCGCTG
CCGGCGTACG TCGACCAGGG CGAGCTGGTC CGCTTCTGGC GGCGGGAGAA CCTGCCGGGC
CGGTTCCCGT TCACCGCCGG GGTGTTCCCG TTCAAGCGCG AGGGCGAGGA CCCGGCCCGG
ATGTTCGCGG GCGAGGGCGA CCCGGCCCGC ACCAACCGGC GCTTCAAGCT GCTGTCCGCG
GACCAGCCGG CGACCCGGCT CTCGACCGCG TTCGACTCGG TGACGCTCTA CGGCCGCGAC
CCCGACGAGC GCCCGGACGT CTACGGCAAG GTCGGCACCT CGGGGGTGAG CGTGGCGACG
CTGGACGACA TGGTGCAGCT CTACGACGGC TTCGACCTGC TCGCGCCGAC CACGTCGGTG
AGCATGACGA TCAACGGGCC CGCGCCGACC GTCCTGGCGT TCTTCCTCAA CACCGTCCTC
GACCAGGCCC GCGAGCGCGG CATCGACCCG GCGGAGGCGC TGCGCACGGT GCGGGGCACC
GTGCAGGCCG ACATCCTCAA GGAGGACCAG GGGCAGAACA CCTGCCTGTT CTCCACCGAG
TTCTCGCTGC GCTGCATGGC CGACATCCAG GAGTGGTTCA TCGAGCACGG GGTCCGGAAC
TTCTACTCGG TCTCGATCTC CGGCTACCAC ATCGCCGAGG CGGGGGCGAA CCCGATCAGC
CAGCTCGCGT TCACCCTCGC CAACGGGTTC ACCTACGTCG AGTCCTACCT GGCGCGCGGC
ATGGACATCG ACGACTTCGC GCCCAACCTC TCGTTCTTCT TCTCCAACGG CATGGACCCC
GAGTACTCCG TCATCGGCCG GGTCGCCCGG CGGATCTGGG CGGTGGCGAT GAAGGAGAAG
TACGGCGCGA ACGAGCGGTC CCAGAAGCTC AAGTACCACG TGCAGACGTC CGGTCGGTCG
CTGCACGCGC AGGAGATGGA CTTCAACGAC ATCCGCACCA CGCTGCAGGC GCTGATCGCG
ATCTACGACA ACGCCAACAG CCTGCACACC AACGCCTACG ACGAGGCCGT GACCACGCCG
TCCGAGGAGT CCGTGCGCCG CGCGCTGGCG ATCCAGCTGA TCATCAACCG CGAGTGGGGC
CTGGCGATGA ACGAGAACCC GCTCCAGGGC TCGTTCATCA TCGACCAGCT CACCGACCTG
GTCGAGGAGG CGGTGCTGGC CGAGTTCGAC CGCATCTCCG AGCGCGGTGG CGTGCTGGGC
GCGATGGAGA CGGGCTACCA GCGCGGCCGG ATCCAGGACG AGTCGATGCT CTACGAGCAC
CGCAAGCACG ACGGCTCGCT GCCGATCATC GGCGTCAACA CGTTCCGCGC ACCTGACGCC
ACCACGCACG AGGGCCCGAT CGCGCTCGCG CGGGCGACCG AGGCGGAGAA GCGCTCACAG
CTCGACCGGG TCCGCCGGTT CCAGGCCGAG CACCGCGAGG AGGCACAGGC CGCACTGGCG
CGCCTGCGTC AGGCGGCCAC GTCCGGCGAG AACGTCTTCG CCGTACTCAT GGACGCGGCC
CGCGTCTGCT CGCTCGGCCA GGTGACCGAC GCGTTCTGCG AGGTGGGCGG CCAGTATCGT
CGCAACGTGT GA
|
|---|
| Protein sequence | MSALHVPQHP VRLVTASSLF DGHDAAINIM RRIFQSQGCE VIHLGHNRSV QEVVDAAIEE
DVQGVAVSSY QGGHVEYFEY LVELLRAQGA GHIRVVGGGG GVIVRDEIDR LRASGVTIFS
PEDGQRMGLP GMINSVVASC DVDLWADRQV GADQLLSGDR FAVARAITAA EEGRLPEELL
AAVRSAAGAR TVPVLGITGT GGSGKSSLTD ELVRRFRVDQ QNKLRVAVVA VDPTRRKGGG
ALLGDRIRMN SLDGDRIFFR SLATRGAHEL PEHLPDVIEV LKAGGFDLVI VETPGIGQGD
AGVVPFVDAS LYVMTPEFGA ASQLEKIDML DFADVVAINK FERRGAADAL RDVGRQLVRN
REAFGKGPDQ MPVYGTSAAT FNDDGVTALY QQLRDLLADR GLPVAEGVLE HVDVRHSTRI
QQVLPGERVR YLAEVSTTVR DYHARTTVLA DAARRVQRLE AVAAELPGND DVAGLLVKAR
GELPEEVAGQ LADWPAVVEE YAAVEGRTSL SGNVIPRVAL PAYVDQGELV RFWRRENLPG
RFPFTAGVFP FKREGEDPAR MFAGEGDPAR TNRRFKLLSA DQPATRLSTA FDSVTLYGRD
PDERPDVYGK VGTSGVSVAT LDDMVQLYDG FDLLAPTTSV SMTINGPAPT VLAFFLNTVL
DQARERGIDP AEALRTVRGT VQADILKEDQ GQNTCLFSTE FSLRCMADIQ EWFIEHGVRN
FYSVSISGYH IAEAGANPIS QLAFTLANGF TYVESYLARG MDIDDFAPNL SFFFSNGMDP
EYSVIGRVAR RIWAVAMKEK YGANERSQKL KYHVQTSGRS LHAQEMDFND IRTTLQALIA
IYDNANSLHT NAYDEAVTTP SEESVRRALA IQLIINREWG LAMNENPLQG SFIIDQLTDL
VEEAVLAEFD RISERGGVLG AMETGYQRGR IQDESMLYEH RKHDGSLPII GVNTFRAPDA
TTHEGPIALA RATEAEKRSQ LDRVRRFQAE HREEAQAALA RLRQAATSGE NVFAVLMDAA
RVCSLGQVTD AFCEVGGQYR RNV
|
|---|
| |