More than 300 homologs were found in PanDaTox collection
for query gene Rfer_3612 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_003295  RSc0237  putative methylmalonyl-CoA mutase protein  74.56 
 
 		 1099 aa  1662    Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  0.556775 
 
 
-
 
NC_007298  Daro_0243  methylmalonyl-CoA mutase, N-terminal:methylmalonyl-CoA mutase, C-terminal  71.36 
 
 		 1116 aa  1602    Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007333  Tfu_2811  methylmalonyl-CoA mutase, N-terminal  66.61 
 
 		 1080 aa  1449    Thermobifida fusca YX  Bacteria  normal  0.153738  n/a   
 
 
-
 
NC_007347  Reut_A0253  methylmalonyl-CoA mutase, N-terminal:methylmalonyl-CoA mutase, C-terminal  75.98 
 
 		 1093 aa  1705    Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_007484  Noc_1893  methylmalonyl-CoA mutase-like  49.96 
 
 		 1139 aa  1087    Nitrosococcus oceani ATCC 19707  Bacteria  normal  1  n/a   
 
 
-
 
NC_010681  Bphyt_0431  methylmalonyl-CoA mutase, large subunit  76.98 
 
 		 1298 aa  952    Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_3556  Methylmalonyl-CoA mutase  66.64 
 
 		 1073 aa  1437    Streptosporangium roseum DSM 43021  Bacteria  normal  0.0534628  normal  0.668167 
 
 
-
 
NC_007517  Gmet_1722  methylmalonyl-CoA mutase-like  60.92 
 
 		 1082 aa  1305    Geobacter metallireducens GS-15  Bacteria  normal  0.181913  normal  0.685956 
 
 
-
 
NC_012918  GM21_1375  methylmalonyl-CoA mutase, large subunit  60.11 
 
 		 1082 aa  1316    Geobacter sp. M21  Bacteria  n/a    normal  0.0491198 
 
 
-
 
NC_010524  Lcho_3844  methylmalonyl-CoA mutase, large subunit  81.47 
 
 		 1096 aa  1857    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_009675  Anae109_3169  methylmalonyl-CoA mutase, large subunit  75.2 
 
 		 1097 aa  1713    Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007777  Francci3_3652  methylmalonyl-CoA mutase  64.56 
 
 		 1105 aa  1394    Frankia sp. CcI3  Bacteria  normal  0.587052  normal  1 
 
 
-
 
NC_011662  Tmz1t_3371  methylmalonyl-CoA mutase, large subunit  72.83 
 
 		 1088 aa  1626    Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_007908  Rfer_3612  methylmalonyl-CoA mutase  100 
 
 		 1113 aa  2310    Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_1068  Methylmalonyl-CoA mutase  58.04 
 
 		 1108 aa  1301    Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007948  Bpro_4054  methylmalonyl-CoA mutase  85.24 
 
 		 1139 aa  1956    Polaromonas sp. JS666  Bacteria  normal  0.632309  normal  0.527832 
 
 
-
 
NC_007951  Bxe_A4277  methylmalonyl-CoA mutase  66.5 
 
 		 1272 aa  1308    Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.0862944 
 
 
-
 
NC_010682  Rpic_0089  methylmalonyl-CoA mutase, large subunit  74.44 
 
 		 1095 aa  1654    Ralstonia pickettii 12J  Bacteria  normal  0.571974  normal  1 
 
 
-
 
NC_014165  Tbis_1618  methylmalonyl-CoA mutase large subunit  66.39 
 
 		 1083 aa  1442    Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007973  Rmet_0210  methylmalonyl-CoA mutase  75.45 
 
 		 1093 aa  1683    Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009441  Fjoh_2332  methylmalonyl-CoA mutase  57.18 
 
 		 1146 aa  1286    Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_013501  Rmar_0923  Methylmalonyl-CoA mutase  57.78 
 
 		 1150 aa  1288    Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_013159  Svir_24570  methylmalonyl-CoA mutase family protein  65.94 
 
 		 1079 aa  1438    Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  0.990884 
 
 
-
 
NC_009921  Franean1_1077  methylmalonyl-CoA mutase, large subunit  63.04 
 
 		 1133 aa  1383    Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.953537 
 
 
-
 
NC_011146  Gbem_2838  methylmalonyl-CoA mutase, large subunit  60.6 
 
 		 1082 aa  1320    Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_3448  methylmalonyl-CoA mutase, large subunit  60.41 
 
 		 1086 aa  1355    Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013757  Gobs_2225  methylmalonyl-CoA mutase, large subunit  66.97 
 
 		 1077 aa  1446    Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.552157  n/a   
 
 
-
 
NC_012856  Rpic12D_0095  methylmalonyl-CoA mutase, large subunit  74.35 
 
 		 1095 aa  1663    Ralstonia pickettii 12D  Bacteria  normal  0.778156  normal  0.758233 
 
 
-
 
NC_008699  Noca_4143  methylmalonyl-CoA mutase, large subunit  64.25 
 
 		 1043 aa  1337    Nocardioides sp. JS614  Bacteria  normal  0.578246  n/a   
 
 
-
 
NC_014230  CA2559_06870  methylmalonyl-CoA mutase  56.72 
 
 		 1139 aa  1274    Croceibacter atlanticus HTCC2559  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_2277  methylmalonyl-CoA mutase, large subunit  65.76 
 
 		 1092 aa  1421    Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013510  Tcur_1029  methylmalonyl-CoA mutase, large subunit  66.31 
 
 		 1081 aa  1446    Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_3524  methylmalonyl-CoA mutase, large subunit  87.96 
 
 		 1097 aa  2006    Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008825  Mpe_A0903  methylmalonyl-CoA mutase  81.94 
 
 		 1096 aa  1861    Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013739  Cwoe_2289  Methylmalonyl-CoA mutase  55.44 
 
 		 1144 aa  1158    Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  0.0243844 
 
 
-
 
NC_013061  Phep_1164  Methylmalonyl-CoA mutase  59.34 
 
 		 1131 aa  1352    Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012793  GWCH70_3339  methylmalonyl-CoA mutase, large subunit  60.8 
 
 		 1085 aa  1338    Geobacillus sp. WCH70  Bacteria  normal  1  n/a   
 
 
-
 
NC_013730  Slin_2256  Methylmalonyl-CoA mutase  58.37 
 
 		 1110 aa  1294    Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.642899 
 
 
-
 
NC_009943  Dole_2188  methylmalonyl-CoA mutase, large subunit  61.61 
 
 		 1086 aa  1331    Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00063386  n/a   
 
 
-
 
NC_010622  Bphy_0156  methylmalonyl-CoA mutase, large subunit  68.73 
 
 		 1127 aa  1531    Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.308187 
 
 
-
 
NC_009483  Gura_1342  methylmalonyl-CoA mutase, large subunit  61.75 
 
 		 1115 aa  1345    Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009523  RoseRS_0214  methylmalonyl-CoA mutase, large subunit  37.33 
 
 		 557 aa  319  2e-85  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009767  Rcas_4326  methylmalonyl-CoA mutase, large subunit  38.95 
 
 		 563 aa  315  2.9999999999999996e-84  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.273661  normal  1 
 
 
-
 
NC_013525  Tter_1672  methylmalonyl-CoA mutase, large subunit  38.84 
 
 		 570 aa  313  1e-83  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010320  Teth514_1855  methylmalonyl-CoA mutase, large subunit  38.12 
 
 		 560 aa  300  1e-79  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_013440  Hoch_5723  methylmalonyl-CoA mutase, large subunit  38.7 
 
 		 543 aa  298  5e-79  Haliangium ochraceum DSM 14365  Bacteria  normal  0.974466  normal  1 
 
 
-
 
NC_011830  Dhaf_2691  methylmalonyl-CoA mutase, large subunit  37.98 
 
 		 545 aa  297  1e-78  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_012918  GM21_0572  methylmalonyl-CoA mutase, large subunit  36.83 
 
 		 550 aa  296  1e-78  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000000115409 
 
 
-
 
NC_009483  Gura_0654  methylmalonyl-CoA mutase, large subunit  37.34 
 
 		 551 aa  295  3e-78  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000145738  n/a   
 
 
-
 
NC_011831  Cagg_2545  methylmalonyl-CoA mutase, large subunit  39.89 
 
 		 564 aa  295  3e-78  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.80132  normal  1 
 
 
-
 
NC_013202  Hmuk_2165  methylmalonyl-CoA mutase, large subunit  37.83 
 
 		 567 aa  294  5e-78  Halomicrobium mukohataei DSM 12286  Archaea  normal  1  normal  1 
 
 
-
 
NC_013525  Tter_1622  methylmalonyl-CoA mutase, large subunit  37.4 
 
 		 521 aa  294  5e-78  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013739  Cwoe_0843  methylmalonyl-CoA mutase, large subunit  36.76 
 
 		 550 aa  293  1e-77  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  0.511417 
 
 
-
 
NC_008578  Acel_0674  methylmalonyl-CoA mutase  36.74 
 
 		 555 aa  293  1e-77  Acidothermus cellulolyticus 11B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009380  Strop_3608  methylmalonyl-CoA mutase, large subunit  35.69 
 
 		 562 aa  293  1e-77  Salinispora tropica CNB-440  Bacteria  normal  0.898932  normal  0.283748 
 
 
-
 
NC_008148  Rxyl_1283  methylmalonyl-CoA mutase  36.79 
 
 		 531 aa  292  2e-77  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_009483  Gura_3481  methylmalonyl-CoA mutase, large subunit  36.55 
 
 		 551 aa  292  2e-77  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_0698  methylmalonyl-CoA mutase large subunit  39.2 
 
 		 551 aa  293  2e-77  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009972  Haur_3380  methylmalonyl-CoA mutase, large subunit  37.29 
 
 		 559 aa  292  3e-77  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_010718  Nther_1486  methylmalonyl-CoA mutase  38.29 
 
 		 559 aa  291  5.0000000000000004e-77  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  0.220657 
 
 
-
 
NC_009953  Sare_3989  methylmalonyl-CoA mutase, large subunit  35.56 
 
 		 562 aa  291  5.0000000000000004e-77  Salinispora arenicola CNS-205  Bacteria  normal  1  hitchhiker  0.000975641 
 
 
-
 
NC_007517  Gmet_3251  methylmalonyl-CoA mutase  34.81 
 
 		 552 aa  291  6e-77  Geobacter metallireducens GS-15  Bacteria  normal  0.34428  hitchhiker  0.00000000000000179062 
 
 
-
 
NC_010003  Pmob_0549  methylmalonyl-CoA mutase, large subunit  37.83 
 
 		 559 aa  290  9e-77  Petrotoga mobilis SJ95  Bacteria  normal  1  n/a   
 
 
-
 
NC_013744  Htur_4362  methylmalonyl-CoA mutase, large subunit  38.16 
 
 		 566 aa  290  1e-76  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.15027  n/a   
 
 
-
 
NC_012029  Hlac_1016  methylmalonyl-CoA mutase, large subunit  36.88 
 
 		 558 aa  290  2e-76  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.172359  normal  1 
 
 
-
 
NC_008699  Noca_1802  methylmalonyl-CoA mutase  35.47 
 
 		 562 aa  289  2e-76  Nocardioides sp. JS614  Bacteria  normal  0.241911  n/a   
 
 
-
 
NC_008609  Ppro_0523  methylmalonyl-CoA mutase, large subunit  34.43 
 
 		 551 aa  288  2.9999999999999996e-76  Pelobacter propionicus DSM 2379  Bacteria  unclonable  0.000000113835  n/a   
 
 
-
 
NC_012029  Hlac_1182  methylmalonyl-CoA mutase, large subunit  37.78 
 
 		 566 aa  288  5e-76  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  1  hitchhiker  0.00000166 
 
 
-
 
NC_013124  Afer_1791  methylmalonyl-CoA mutase, large subunit  37.05 
 
 		 556 aa  288  5e-76  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.0908947  n/a   
 
 
-
 
NC_013440  Hoch_3688  methylmalonyl-CoA mutase, large subunit  37.09 
 
 		 537 aa  288  5.999999999999999e-76  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  0.0115893 
 
 
-
 
NC_013947  Snas_1393  methylmalonyl-CoA mutase large subunit  35.09 
 
 		 578 aa  287  5.999999999999999e-76  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014212  Mesil_1720  methylmalonyl-CoA mutase, large subunit  37.79 
 
 		 551 aa  287  5.999999999999999e-76  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013744  Htur_3831  methylmalonyl-CoA mutase, large subunit  37.55 
 
 		 566 aa  287  8e-76  Haloterrigena turkmenica DSM 5511  Archaea  normal  1  n/a   
 
 
-
 
NC_002939  GSU3302  methylmalonyl-CoA mutase, putative  34.48 
 
 		 552 aa  286  1.0000000000000001e-75  Geobacter sulfurreducens PCA  Bacteria  unclonable  0.00398466  n/a   
 
 
-
 
NC_013522  Taci_0288  methylmalonyl-CoA mutase, large subunit  35.69 
 
 		 559 aa  284  8.000000000000001e-75  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  1  n/a   
 
 
-
 
NC_008148  Rxyl_2481  methylmalonyl-CoA mutase  36.7 
 
 		 565 aa  284  8.000000000000001e-75  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_009718  Fnod_1752  methylmalonyl-CoA mutase, large subunit  34.48 
 
 		 554 aa  283  1e-74  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013743  Htur_1102  methylmalonyl-CoA mutase, large subunit  36.48 
 
 		 566 aa  283  1e-74  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_013922  Nmag_0817  methylmalonyl-CoA mutase, large subunit  37.1 
 
 		 566 aa  283  2e-74  Natrialba magadii ATCC 43099  Archaea  normal  0.950939  n/a   
 
 
-
 
CP001800  Ssol_0229  methylmalonyl-CoA mutase, large subunit  34.71 
 
 		 553 aa  283  2e-74  Sulfolobus solfataricus 98/2  Archaea  normal  1  n/a   
 
 
-
 
NC_013131  Caci_1274  methylmalonyl-CoA mutase, large subunit  35.69 
 
 		 563 aa  283  2e-74  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013926  Aboo_1362  methylmalonyl-CoA mutase, large subunit  35.08 
 
 		 559 aa  282  3e-74  Aciduliprofundum boonei T469  Archaea  hitchhiker  0.0000000005041  n/a   
 
 
-
 
NC_008699  Noca_2131  methylmalonyl-CoA mutase  35.69 
 
 		 569 aa  281  4e-74  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_014212  Mesil_1549  methylmalonyl-CoA mutase, large subunit  35.69 
 
 		 529 aa  279  2e-73  Meiothermus silvanus DSM 9946  Bacteria  normal  0.815883  normal  1 
 
 
-
 
NC_009717  Xaut_5021  methylmalonyl-CoA mutase, large subunit  36.38 
 
 		 562 aa  278  3e-73  Xanthobacter autotrophicus Py2  Bacteria  normal  0.749996  normal  1 
 
 
-
 
NC_013235  Namu_3099  methylmalonyl-CoA mutase, large subunit  34.08 
 
 		 567 aa  278  6e-73  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000000149706  hitchhiker  0.00000336315 
 
 
-
 
NC_013595  Sros_1703  Methylmalonyl-CoA mutase  34.97 
 
 		 555 aa  277  7e-73  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.236995 
 
 
-
 
NC_009953  Sare_0776  methylmalonyl-CoA mutase, large subunit  35.11 
 
 		 527 aa  276  1.0000000000000001e-72  Salinispora arenicola CNS-205  Bacteria  normal  1  normal  0.140535 
 
 
-
 
NC_009616  Tmel_1860  methylmalonyl-CoA mutase, large subunit  35.33 
 
 		 559 aa  276  1.0000000000000001e-72  Thermosipho melanesiensis BI429  Bacteria  decreased coverage  0.0000937746  n/a   
 
 
-
 
NC_013131  Caci_0774  methylmalonyl-CoA mutase, large subunit  34.93 
 
 		 527 aa  276  1.0000000000000001e-72  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.817325  normal  0.286297 
 
 
-
 
NC_014210  Ndas_0363  methylmalonyl-CoA mutase, large subunit  35.49 
 
 		 575 aa  275  2.0000000000000002e-72  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013922  Nmag_0558  methylmalonyl-CoA mutase, large subunit  37.09 
 
 		 560 aa  275  2.0000000000000002e-72  Natrialba magadii ATCC 43099  Archaea  normal  1  n/a   
 
 
-
 
NC_007760  Adeh_1834  methylmalonyl-CoA mutase  35.69 
 
 		 588 aa  276  2.0000000000000002e-72  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.243116  n/a   
 
 
-
 
NC_008025  Dgeo_0862  methylmalonyl-CoA mutase, alpha subunit  37.6 
 
 		 548 aa  275  2.0000000000000002e-72  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  0.473507 
 
 
-
 
NC_013743  Htur_1992  methylmalonyl-CoA mutase, large subunit  35.93 
 
 		 560 aa  275  3e-72  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_013216  Dtox_1909  methylmalonyl-CoA mutase, large subunit  36.71 
 
 		 560 aa  275  3e-72  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.699759  normal  0.051216 
 
 
-
 
NC_009380  Strop_0832  methylmalonyl-CoA mutase, large subunit  34.72 
 
 		 547 aa  274  7e-72  Salinispora tropica CNB-440  Bacteria  normal  0.682429  normal  0.0142114 
 
 
-
 
NC_008009  Acid345_1023  methylmalonyl-CoA mutase  35.06 
 
 		 542 aa  273  1e-71  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  0.85938 
 
 
-
 
NC_010814  Glov_3260  methylmalonyl-CoA mutase, large subunit  35.63 
 
 		 713 aa  273  1e-71  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_2026  methylmalonyl-CoA mutase, large subunit  35.5 
 
 		 588 aa  273  2e-71  Anaeromyxobacter sp. K  Bacteria  normal  1  n/a   
 
 
-
 
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