| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3612 |
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| Symbol | |
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| ID | 3962705 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 4025110 |
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| End bp | 4028451 |
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| Gene Length | 3342 bp |
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| Protein Length | 1113 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637918431 |
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| Product | methylmalonyl-CoA mutase |
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| Protein accession | YP_524846 |
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| Protein GI | 89902375 |
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| COG category | [E] Amino acid transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1703] Putative periplasmic protein kinase ArgK and related GTPases of G3E family
[COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGACC TGTCCGCTGA TTTCAAGGCC CTGGCCCAAT ACCGCCCCAC CCACAAGGTG
CGCTTCGTGA CCGCCGCCAG CTTGTTCGAT GGCCATGATG CGGCTATCAA CATCATGCGC
CGCATCCTGC AAAGCATGGG CGCCGAGGTG ATTCACCTCG GGCACAACCG CAGCGTCGAA
GAGGTGGTGA CCGCCGCCCT GCAGGAAGAT GCGCAGGGTA TTGCCATCAG CTCCTACCAA
GGCGGGCATG TCGAGTACTT CAAGTACATG GTGGACCTGC TCAAAAGCCG GGGCGGCGCG
CACATCCAGG TCTTTGGCGG CGGCGGTGGC GTCATCGTGC CGCCGGAAAT CCGCGAGTTG
CAGGCCTATG GCGTGGCGCG CATCTTCAGC CCGGAAGACG GCCAGCGCAT GGGCCTGGCC
GGCATGATTG GCGAGATGGT GATGCGCTGC GACCAGGACC TCACGGGCCT GGCGCCCAAG
AGCATCGACG CCATTCAGGG CCACACCGAG ATGAGCTGGC GCGCCCTGGC GCAGCTCATC
ACGGCGCTGG AAAACGAAAA CGCAGCGGGC CAGGCCAAAG GCAAACTTTC CAAACCATTA
ATGGCGCTAG CCAAGGAAAT ACGGGCGCAA GCTGCTACCA AAAAGATACC GGTTCTGGGT
ATCACCGGCA CCGGCGGCGC GGGCAAGTCG TCGCTCACCG ACGAGCTGAT TCGTCGTCTG
CGGCTCGATC AGAACGACAG CTTGCGCGTG GCCATGATCA GCATCGACCC GTCACGGCGC
AAGAGCGGCG GTGCGCTGCT GGGCGACCGC ATCCGCATGA ATGCGATCAG TCCCTGGAGT
CAGGGGCCGC GTGTGTTCAT GCGTTCGCTC GCCACGCGTG ACTTTGGCTC AGAAATCAGC
GCGGCGCTGC CCGACGTGAT TGCCGCTTGC AAGGTGGCGG GCTTTGACCT GATCGTGGTC
GAGACCTCGG GCATTGGCCA GGGTGACGCG GCGATCGTGC CGCATGTGGA TGTGCCCCTG
TATGTGATGA CGCCCGAGTT TGGCGCCGCC AGCCAGCTGG AAAAAATCGA CATGCTCGAC
TTCGCCGAGT TTGTCGCCAT CAACAAGTTC GACCGCAGGG GCGCGCTCGA TGCCTTGCGC
GATGTCGCCA AGCAGGTGCA GCGCAACAAG GAAGCTTTCG GTACGCCGCT GGAGCAAATG
CCGGTGTTTG GCACCATGGC GGCGCGCTTC AACGACGACG GCGTCACCGC GCTGTACCAG
GCGCTCAGAG CGCGCCTGGG TGAACTCGGC TTGCCACTGG GCGAGTCGCA TCTGCCGCCG
GTGGCGGTGC GCCACAGCAC CAACCAGACC CCGGTGCTGC CGGCCGCGCG CACCCGCTAC
CTGGCAGAAA TCAGCGACAC CGTGCGCGCC TACAAAAAGC GCGCGCGCAG CCAGGCCAAA
TTGGCGCGTG AAGTGCAGCA GCTCAAGGCC ACGGCGCAAA TGTTGCTGGC ACACGACCCG
TGCAAGGATG GATCAAACAA ACCCGGCGCT TACGGAACCG TGCTTGACCT GGCCAAGGAG
CGTGCCGAGC TGCAGGACGC AGCTTGCGCC AAGCTGCTGG CGCAGTGGCC CACCATGCAA
ACAGCCTATG CGGGTGATGA GTACGTGGTC AAAATCCGCG ACAAGGAAAT CCGCACCGCG
CTCACCAGCA AATCCTTGAG CGGCACCACC ATCCGCAAAG TGTGCCTGCC GCAATACGAA
GACCATGGCG AAATCCTGAA ATGGTTGATG TTGGATAACG TGCCCGGCAG CTACCCCTAC
ACCGCCGGCA CCTTCGCTTT CAAGCGCGAA GGCGAGGACC CGACCCGCAT GTTTGCCGGT
GAAGGCGACG CGTTTCGCAC CAACACGCGT TTCAAATTGC TCAGCTCGGG CATGGCGGCC
AAGCGTTTGA GCACTGCGTT TGATTCGGTC ACGCTGTATG GCAACGACCC CGATCCGCGT
CCCGATATCT ACGGCAAGGT CGGCAACTCG GGCGTCAGCA TCGCGACGCT CGACGACCTC
AAGGTGCTCT ACAGCGGCTT TGACTTGTGC AGCCCGTCCA CCAGCGTCAG CATGACCATC
AACGGCCCGG CGCCCAGCAT CCTGGCGATG TTCATGAACA CCGCGATTGA CCAGAATATC
GACAAATTCA AGCTTGATAA TGGCCGCGAG CCGACCGACA CCGAGACGGA GAAGATCAAG
GAATGGGTGC AGGAGAACGT GCGCGGCACG GTGCAGGCCG ACATCCTGAA AGAAGACCAG
GGGCAGAACA CCTGCATTTT CAGTACCGAA TTTTCACTGA AGGTGATGGG CGACATCGCC
GAATATTTTG TGCACAACCG GGTGCGCAAT TTTTACAGCG TGTCGATCAG CGGCTACCAC
ATTGCCGAAG CCGGGGCCAA CCCGATTTCG CAACTGGCAT TCACCTTGTC CAACGGCTTC
ACCTTTGTCG AGGCCTACCT GGCGCGGGGC ATGCACATTG ACGACTTTGC GCCCAACTTG
AGCTTCTTCT TCAGCAACGG CATGGACCCT GAATACACCG TGATGGGTCG CGTCGCGCGC
CGCATCTGGG CCGTTGCCAT GAAAGAAAGA TACGGCGCCA ACGAGCGCAG CCAAAAGCTC
AAATACCACA TCCAGACCAG CGGGCGCAGC CTGCACGCAC AGGAGATCCA GTTCAACGAC
ATCCGCACCA CGCTGCAGGC CTTGATCGCC ATTTACGACA ACTGCAACAG CCTGCACACC
AACGCTTTCG ACGAAGCCAT CACCACGCCG ACCGAAGACT CGGTGCGCCG CGCCATGGCG
ATCCAGCTCA TCATCAACCG CGAATGGGGT TTGGCCAAGA ACGAAAACCC GTCGCAAGGC
GCCTTCATCA TCGAGGACCT GACCGAGTTG GTGGAAGAAG CGGTGCTGCT CGAATTTGAG
CGCATTTCCG AGCGCGGCGG TGTGCTCGGG GCCATGGAAA CCGGCTACCA GCGCGGCAAG
ATTCAGGACG AATCGATGCA CTACGAAATG CTCAAGCACA CCGGCGAGCT GCCCATCATC
GGCGTCAACA CCTTTCGCAA CCCGCACGGC GACGCCGTGC ACGACACGCT GGAGCTGGCC
CGCTCAACGG AGGAAGAAAA ACAAAGCCAG CTCAAGCGCC TGGCCGACTT CCACGCGCTG
CACGCCAAGG AGGCGCCCGC GATGCTCAAA CGCCTGCAAA AAGCCGTGAT CGACAACAAG
AACGTGTTTG AAGTGCTGAT GGACGCCGTG CGCTGCTGTT CCCTGGGCCA GATCACCAAT
GCGCTGTTTG AGGTTGGCGG GCAGTACAGA AGGAATATGT GA
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| Protein sequence | MTDLSADFKA LAQYRPTHKV RFVTAASLFD GHDAAINIMR RILQSMGAEV IHLGHNRSVE
EVVTAALQED AQGIAISSYQ GGHVEYFKYM VDLLKSRGGA HIQVFGGGGG VIVPPEIREL
QAYGVARIFS PEDGQRMGLA GMIGEMVMRC DQDLTGLAPK SIDAIQGHTE MSWRALAQLI
TALENENAAG QAKGKLSKPL MALAKEIRAQ AATKKIPVLG ITGTGGAGKS SLTDELIRRL
RLDQNDSLRV AMISIDPSRR KSGGALLGDR IRMNAISPWS QGPRVFMRSL ATRDFGSEIS
AALPDVIAAC KVAGFDLIVV ETSGIGQGDA AIVPHVDVPL YVMTPEFGAA SQLEKIDMLD
FAEFVAINKF DRRGALDALR DVAKQVQRNK EAFGTPLEQM PVFGTMAARF NDDGVTALYQ
ALRARLGELG LPLGESHLPP VAVRHSTNQT PVLPAARTRY LAEISDTVRA YKKRARSQAK
LAREVQQLKA TAQMLLAHDP CKDGSNKPGA YGTVLDLAKE RAELQDAACA KLLAQWPTMQ
TAYAGDEYVV KIRDKEIRTA LTSKSLSGTT IRKVCLPQYE DHGEILKWLM LDNVPGSYPY
TAGTFAFKRE GEDPTRMFAG EGDAFRTNTR FKLLSSGMAA KRLSTAFDSV TLYGNDPDPR
PDIYGKVGNS GVSIATLDDL KVLYSGFDLC SPSTSVSMTI NGPAPSILAM FMNTAIDQNI
DKFKLDNGRE PTDTETEKIK EWVQENVRGT VQADILKEDQ GQNTCIFSTE FSLKVMGDIA
EYFVHNRVRN FYSVSISGYH IAEAGANPIS QLAFTLSNGF TFVEAYLARG MHIDDFAPNL
SFFFSNGMDP EYTVMGRVAR RIWAVAMKER YGANERSQKL KYHIQTSGRS LHAQEIQFND
IRTTLQALIA IYDNCNSLHT NAFDEAITTP TEDSVRRAMA IQLIINREWG LAKNENPSQG
AFIIEDLTEL VEEAVLLEFE RISERGGVLG AMETGYQRGK IQDESMHYEM LKHTGELPII
GVNTFRNPHG DAVHDTLELA RSTEEEKQSQ LKRLADFHAL HAKEAPAMLK RLQKAVIDNK
NVFEVLMDAV RCCSLGQITN ALFEVGGQYR RNM
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