More than 300 homologs were found in PanDaTox collection
for query gene Bxe_A4277 on replicon NC_007951
Organism: Burkholderia xenovorans LB400



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010681  Bphyt_0431  methylmalonyl-CoA mutase, large subunit  85.54 
 
 
1298 aa  2137    Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_24570  methylmalonyl-CoA mutase family protein  63.19 
 
 
1079 aa  1206    Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.990884 
 
 
-
 
NC_003295  RSc0237  putative methylmalonyl-CoA mutase protein  69.75 
 
 
1099 aa  1341    Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.556775 
 
 
-
 
NC_011662  Tmz1t_3371  methylmalonyl-CoA mutase, large subunit  74.2 
 
 
1088 aa  951    Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0243  methylmalonyl-CoA mutase, N-terminal:methylmalonyl-CoA mutase, C-terminal  73.1 
 
 
1116 aa  951    Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2811  methylmalonyl-CoA mutase, N-terminal  63.74 
 
 
1080 aa  1207    Thermobifida fusca YX  Bacteria  normal  0.153738  n/a   
 
 
-
 
NC_007347  Reut_A0253  methylmalonyl-CoA mutase, N-terminal:methylmalonyl-CoA mutase, C-terminal  78.97 
 
 
1093 aa  977    Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1893  methylmalonyl-CoA mutase-like  50.45 
 
 
1139 aa  947    Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3448  methylmalonyl-CoA mutase, large subunit  58.99 
 
 
1086 aa  1134    Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013510  Tcur_1029  methylmalonyl-CoA mutase, large subunit  76 
 
 
1081 aa  954    Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1722  methylmalonyl-CoA mutase-like  67.43 
 
 
1082 aa  881    Geobacter metallireducens GS-15  Bacteria  normal  0.181913  normal  0.685956 
 
 
-
 
NC_012793  GWCH70_3339  methylmalonyl-CoA mutase, large subunit  69.31 
 
 
1085 aa  902    Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2838  methylmalonyl-CoA mutase, large subunit  58.57 
 
 
1082 aa  1116    Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_3652  methylmalonyl-CoA mutase  63 
 
 
1105 aa  1183    Frankia sp. CcI3  Bacteria  normal  0.587052  normal 
 
 
-
 
NC_010622  Bphy_0156  methylmalonyl-CoA mutase, large subunit  78.05 
 
 
1127 aa  1549    Burkholderia phymatum STM815  Bacteria  normal  normal  0.308187 
 
 
-
 
NC_007908  Rfer_3612  methylmalonyl-CoA mutase  66.5 
 
 
1113 aa  1311    Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4054  methylmalonyl-CoA mutase  65.75 
 
 
1139 aa  1283    Polaromonas sp. JS666  Bacteria  normal  0.632309  normal  0.527832 
 
 
-
 
NC_007951  Bxe_A4277  methylmalonyl-CoA mutase  100 
 
 
1272 aa  2592    Burkholderia xenovorans LB400  Bacteria  normal  normal  0.0862944 
 
 
-
 
NC_013739  Cwoe_2289  Methylmalonyl-CoA mutase  54.58 
 
 
1144 aa  1000    Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0243844 
 
 
-
 
NC_007973  Rmet_0210  methylmalonyl-CoA mutase  78.17 
 
 
1093 aa  990    Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2256  Methylmalonyl-CoA mutase  62.88 
 
 
1110 aa  816    Spirosoma linguale DSM 74  Bacteria  normal  normal  0.642899 
 
 
-
 
NC_009441  Fjoh_2332  methylmalonyl-CoA mutase  54.06 
 
 
1146 aa  1071    Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_1068  Methylmalonyl-CoA mutase  63.78 
 
 
1108 aa  820    Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3556  Methylmalonyl-CoA mutase  63.35 
 
 
1073 aa  1219    Streptosporangium roseum DSM 43021  Bacteria  normal  0.0534628  normal  0.668167 
 
 
-
 
NC_009921  Franean1_1077  methylmalonyl-CoA mutase, large subunit  63.06 
 
 
1133 aa  1195    Frankia sp. EAN1pec  Bacteria  normal  normal  0.953537 
 
 
-
 
NC_012918  GM21_1375  methylmalonyl-CoA mutase, large subunit  58.36 
 
 
1082 aa  1120    Geobacter sp. M21  Bacteria  n/a    normal  0.0491198 
 
 
-
 
NC_014230  CA2559_06870  methylmalonyl-CoA mutase  53.08 
 
 
1139 aa  1061    Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_1164  Methylmalonyl-CoA mutase  56.22 
 
 
1131 aa  1107    Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2188  methylmalonyl-CoA mutase, large subunit  60.52 
 
 
1086 aa  1141    Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00063386  n/a   
 
 
-
 
NC_009675  Anae109_3169  methylmalonyl-CoA mutase, large subunit  68.5 
 
 
1097 aa  1301    Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0095  methylmalonyl-CoA mutase, large subunit  70.13 
 
 
1095 aa  1355    Ralstonia pickettii 12D  Bacteria  normal  0.778156  normal  0.758233 
 
 
-
 
NC_010524  Lcho_3844  methylmalonyl-CoA mutase, large subunit  68.4 
 
 
1096 aa  1345    Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008699  Noca_4143  methylmalonyl-CoA mutase, large subunit  62.17 
 
 
1043 aa  1125    Nocardioides sp. JS614  Bacteria  normal  0.578246  n/a   
 
 
-
 
NC_009483  Gura_1342  methylmalonyl-CoA mutase, large subunit  58.03 
 
 
1115 aa  1121    Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3524  methylmalonyl-CoA mutase, large subunit  66.77 
 
 
1097 aa  1320    Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0903  methylmalonyl-CoA mutase  67.48 
 
 
1096 aa  1318    Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_2225  methylmalonyl-CoA mutase, large subunit  74.53 
 
 
1077 aa  904    Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.552157  n/a   
 
 
-
 
NC_013501  Rmar_0923  Methylmalonyl-CoA mutase  56.73 
 
 
1150 aa  1091    Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_0089  methylmalonyl-CoA mutase, large subunit  70.34 
 
 
1095 aa  1348    Ralstonia pickettii 12J  Bacteria  normal  0.571974  normal 
 
 
-
 
NC_014165  Tbis_1618  methylmalonyl-CoA mutase large subunit  74.83 
 
 
1083 aa  927    Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2277  methylmalonyl-CoA mutase, large subunit  63.62 
 
 
1092 aa  1204    Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0214  methylmalonyl-CoA mutase, large subunit  38.77 
 
 
557 aa  324  8e-87  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_4326  methylmalonyl-CoA mutase, large subunit  39.46 
 
 
563 aa  319  2e-85  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.273661  normal 
 
 
-
 
NC_010320  Teth514_1855  methylmalonyl-CoA mutase, large subunit  39.01 
 
 
560 aa  315  4.999999999999999e-84  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1672  methylmalonyl-CoA mutase, large subunit  37.61 
 
 
570 aa  310  2.0000000000000002e-82  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011831  Cagg_2545  methylmalonyl-CoA mutase, large subunit  39.22 
 
 
564 aa  308  3e-82  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.80132  normal 
 
 
-
 
NC_012029  Hlac_1182  methylmalonyl-CoA mutase, large subunit  38.87 
 
 
566 aa  307  7e-82  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  hitchhiker  0.00000166 
 
 
-
 
NC_013440  Hoch_5723  methylmalonyl-CoA mutase, large subunit  39.92 
 
 
543 aa  306  1.0000000000000001e-81  Haliangium ochraceum DSM 14365  Bacteria  normal  0.974466  normal 
 
 
-
 
NC_013202  Hmuk_2165  methylmalonyl-CoA mutase, large subunit  38.19 
 
 
567 aa  303  9e-81  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_010718  Nther_1486  methylmalonyl-CoA mutase  38.02 
 
 
559 aa  300  9e-80  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.220657 
 
 
-
 
NC_012918  GM21_0572  methylmalonyl-CoA mutase, large subunit  37.95 
 
 
550 aa  298  4e-79  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000000115409 
 
 
-
 
NC_009972  Haur_3380  methylmalonyl-CoA mutase, large subunit  37.45 
 
 
559 aa  298  7e-79  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0549  methylmalonyl-CoA mutase, large subunit  36.82 
 
 
559 aa  297  8e-79  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3481  methylmalonyl-CoA mutase, large subunit  35.31 
 
 
551 aa  297  8e-79  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2481  methylmalonyl-CoA mutase  37.18 
 
 
565 aa  293  1e-77  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_010085  Nmar_0954  methylmalonyl-CoA mutase large subunit  35.96 
 
 
532 aa  293  1e-77  Nitrosopumilus maritimus SCM1  Archaea  n/a    hitchhiker  0.00417375 
 
 
-
 
NC_013744  Htur_4362  methylmalonyl-CoA mutase, large subunit  37.46 
 
 
566 aa  293  2e-77  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.15027  n/a   
 
 
-
 
NC_009483  Gura_0654  methylmalonyl-CoA mutase, large subunit  36.43 
 
 
551 aa  293  2e-77  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000145738  n/a   
 
 
-
 
NC_008148  Rxyl_1283  methylmalonyl-CoA mutase  37.43 
 
 
531 aa  292  3e-77  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_1549  methylmalonyl-CoA mutase, large subunit  37.4 
 
 
529 aa  291  4e-77  Meiothermus silvanus DSM 9946  Bacteria  normal  0.815883  normal 
 
 
-
 
NC_013739  Cwoe_0843  methylmalonyl-CoA mutase, large subunit  38.24 
 
 
550 aa  291  5.0000000000000004e-77  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.511417 
 
 
-
 
NC_013743  Htur_1102  methylmalonyl-CoA mutase, large subunit  36.59 
 
 
566 aa  290  8e-77  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_013525  Tter_1622  methylmalonyl-CoA mutase, large subunit  37.33 
 
 
521 aa  290  9e-77  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012029  Hlac_1016  methylmalonyl-CoA mutase, large subunit  37.28 
 
 
558 aa  290  1e-76  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.172359  normal 
 
 
-
 
NC_013440  Hoch_3688  methylmalonyl-CoA mutase, large subunit  38.33 
 
 
537 aa  289  2e-76  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0115893 
 
 
-
 
NC_009717  Xaut_5021  methylmalonyl-CoA mutase, large subunit  36.4 
 
 
562 aa  289  2e-76  Xanthobacter autotrophicus Py2  Bacteria  normal  0.749996  normal 
 
 
-
 
NC_009953  Sare_3989  methylmalonyl-CoA mutase, large subunit  36.33 
 
 
562 aa  289  2e-76  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.000975641 
 
 
-
 
NC_013522  Taci_0288  methylmalonyl-CoA mutase, large subunit  35.56 
 
 
559 aa  289  2.9999999999999996e-76  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_3608  methylmalonyl-CoA mutase, large subunit  36.22 
 
 
562 aa  288  4e-76  Salinispora tropica CNB-440  Bacteria  normal  0.898932  normal  0.283748 
 
 
-
 
NC_013131  Caci_0774  methylmalonyl-CoA mutase, large subunit  36.66 
 
 
527 aa  288  5e-76  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.817325  normal  0.286297 
 
 
-
 
NC_008699  Noca_1802  methylmalonyl-CoA mutase  35.64 
 
 
562 aa  288  5e-76  Nocardioides sp. JS614  Bacteria  normal  0.241911  n/a   
 
 
-
 
NC_013922  Nmag_0817  methylmalonyl-CoA mutase, large subunit  36.65 
 
 
566 aa  288  5.999999999999999e-76  Natrialba magadii ATCC 43099  Archaea  normal  0.950939  n/a   
 
 
-
 
NC_014212  Mesil_1720  methylmalonyl-CoA mutase, large subunit  39.73 
 
 
551 aa  288  5.999999999999999e-76  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013124  Afer_1791  methylmalonyl-CoA mutase, large subunit  38.3 
 
 
556 aa  288  5.999999999999999e-76  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.0908947  n/a   
 
 
-
 
NC_008578  Acel_0674  methylmalonyl-CoA mutase  38.11 
 
 
555 aa  287  8e-76  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013744  Htur_3831  methylmalonyl-CoA mutase, large subunit  36.77 
 
 
566 aa  287  1.0000000000000001e-75  Haloterrigena turkmenica DSM 5511  Archaea  normal  n/a   
 
 
-
 
NC_013926  Aboo_1362  methylmalonyl-CoA mutase, large subunit  35.08 
 
 
559 aa  286  1.0000000000000001e-75  Aciduliprofundum boonei T469  Archaea  hitchhiker  0.0000000005041  n/a   
 
 
-
 
NC_011830  Dhaf_2691  methylmalonyl-CoA mutase, large subunit  37.4 
 
 
545 aa  286  3.0000000000000004e-75  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_2131  methylmalonyl-CoA mutase  36.71 
 
 
569 aa  286  3.0000000000000004e-75  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0523  methylmalonyl-CoA mutase, large subunit  34.89 
 
 
551 aa  285  4.0000000000000003e-75  Pelobacter propionicus DSM 2379  Bacteria  unclonable  0.000000113835  n/a   
 
 
-
 
NC_007517  Gmet_3251  methylmalonyl-CoA mutase  35.17 
 
 
552 aa  284  7.000000000000001e-75  Geobacter metallireducens GS-15  Bacteria  normal  0.34428  hitchhiker  0.00000000000000179062 
 
 
-
 
NC_013947  Snas_1393  methylmalonyl-CoA mutase large subunit  34.2 
 
 
578 aa  284  7.000000000000001e-75  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013743  Htur_1992  methylmalonyl-CoA mutase, large subunit  36.73 
 
 
560 aa  284  8.000000000000001e-75  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_013946  Mrub_0930  methylmalonyl-CoA mutase large subunit  36.45 
 
 
518 aa  284  8.000000000000001e-75  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.380206 
 
 
-
 
NC_009718  Fnod_1752  methylmalonyl-CoA mutase, large subunit  34.12 
 
 
554 aa  283  1e-74  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3302  methylmalonyl-CoA mutase, putative  35.55 
 
 
552 aa  282  4e-74  Geobacter sulfurreducens PCA  Bacteria  unclonable  0.00398466  n/a   
 
 
-
 
NC_009616  Tmel_1860  methylmalonyl-CoA mutase, large subunit  35.34 
 
 
559 aa  281  7e-74  Thermosipho melanesiensis BI429  Bacteria  decreased coverage  0.0000937746  n/a   
 
 
-
 
NC_013235  Namu_3099  methylmalonyl-CoA mutase, large subunit  35.28 
 
 
567 aa  281  8e-74  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000000149706  hitchhiker  0.00000336315 
 
 
-
 
NC_009675  Anae109_0281  methylmalonyl-CoA mutase, large subunit  36.31 
 
 
549 aa  280  1e-73  Anaeromyxobacter sp. Fw109-5  Bacteria  decreased coverage  0.000219849  normal  0.200381 
 
 
-
 
NC_007760  Adeh_0259  methylmalonyl-CoA mutase  37.14 
 
 
549 aa  280  1e-73  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.101753  n/a   
 
 
-
 
NC_008009  Acid345_1023  methylmalonyl-CoA mutase  35.63 
 
 
542 aa  280  1e-73  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.85938 
 
 
-
 
NC_013946  Mrub_0698  methylmalonyl-CoA mutase large subunit  39.43 
 
 
551 aa  280  1e-73  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_013124  Afer_0726  methylmalonyl-CoA mutase, large subunit  36.08 
 
 
526 aa  279  2e-73  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_1274  methylmalonyl-CoA mutase, large subunit  35.1 
 
 
563 aa  278  6e-73  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0776  methylmalonyl-CoA mutase, large subunit  36.19 
 
 
527 aa  277  9e-73  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.140535 
 
 
-
 
NC_007760  Adeh_1834  methylmalonyl-CoA mutase  35.83 
 
 
588 aa  277  9e-73  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.243116  n/a   
 
 
-
 
NC_011891  A2cp1_0281  methylmalonyl-CoA mutase, large subunit  36.76 
 
 
549 aa  277  9e-73  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  decreased coverage  0.0034305  n/a   
 
 
-
 
NC_011891  A2cp1_2096  methylmalonyl-CoA mutase, large subunit  36.2 
 
 
588 aa  276  1.0000000000000001e-72  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0270  methylmalonyl-CoA mutase, large subunit  36.57 
 
 
549 aa  276  2.0000000000000002e-72  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3657  methylmalonyl-CoA mutase, large subunit  36.31 
 
 
563 aa  276  2.0000000000000002e-72  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.748454  normal  0.0699604 
 
 
-
 
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