| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3844 |
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| Symbol | |
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| ID | 6161959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4308382 |
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| End bp | 4311672 |
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| Gene Length | 3291 bp |
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| Protein Length | 1096 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641666617 |
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| Product | methylmalonyl-CoA mutase, large subunit |
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| Protein accession | YP_001792863 |
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| Protein GI | 171060514 |
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| COG category | [E] Amino acid transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1703] Putative periplasmic protein kinase ArgK and related GTPases of G3E family
[COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCAGC TCAGCGCCGA CTACCAGGCC CTCGCCAACT ACCGCCCGCA GCACAAGGTG
CGTTTCGTCA CCGCCGCCAG CCTGTTCGAC GGCCACGACG CGGCCATCAA CATCATGCGG
CGCATCCTGC AGGGCATGGG TGCCGAGGTG ATCCACCTCG GCCACAACCG CTCGGTCGAC
GAGGTGGTGA CCGCGGCGCT GCAGGAAGAC GTGCAGGGCA TCGCGGTCAG CTCCTATCAA
GGTGGCCACA CCGAATACTT CAAGTACATG GTCGAGCTGC TCAAGGCACG TGGCGGCGAG
CACATCCAGG TCTTCGGCGG CGGCGGCGGC GTGATCGTGC CCAGCGAGAT CAAGGACCTG
GCGGATCACG GCGTGCGCAT CTTCAGCCCC GAGGACGGCC AGCGCATGGG CCTGGCCGGC
ATGATCGGCG AGATGGTGAT GCGCTGCGAC CGCGACCTGT CGTCGTTTGC GCCCGGCGAA
CTGGCCGCGC TGCAAGGCCA CGGCGAAGCG GCCTGGCGCG CGCTAGCGCA ACTGATCACC
GCACTCGAAA ACGGCAAGGC CGACGCCTCG CTGGTGGCCA CGTTGCACGA CGCTGCCAAA
GGCTGCCCCA CCCCCGTGCT CGGCATCACC GGCACGGGCG GCGCCGGCAA GTCGAGCCTG
ACCGACGAGC TGATCCGCCG CATCCGCCTG GATCAGGACG ACAGCCTGCG CATCGCCGTC
ATCAGCATCG ACCCGTCACG CCGCAAGAGC GGCGGCGCGC TGCTCGGCGA CCGCATCCGC
ATGAACGCCA CGGGCCCGTG GCAACAGGGC CCGCGCGTCT ACGTGCGCTC GCTCGCCACG
CGCGACACCG GCTCGGAAGT CAGCGCCGCG CTGCCCGACG TGCTGGCCGC GGCCAAGGTC
GCCGGCTTCG ACCTGATCAT TGTGGAAACC TCCGGCATCG GCCAGGGCGA CGCGGCGATC
GTGCCGCTGG TCGACGTGCC GATGTACGTG ATGACACCCG AGTTCGGCGC CGCCAGCCAA
CTCGAGAAGA TCGACATGCT CGACTTCGCC GAGTTCGTCG CGATCAACAA GTTCGACCGC
AAGGGTGCGG CCGATGCGCT GCGCGACGTC GCCAAGCAGG TGCAGCGCAA CCGCGGCGAT
TTCAGCGTGA TGCCCGACGC GATGCCGGTG TTCGGCACCA TGGCCAGCCG CTTCAACGAC
GACGGCGTGA CCGCGCTGTA TCAGGCGCTG AAGGTGCGCC TGGCCGCCCT CGGCCTGCCG
CTCAAGGACG GCCGGTTGCC GCTCGTCAGC ACCCGCCACA GCACGCACCA GACGCCGGTG
GTGCCGGGCG CGCGGGTGCG TTATCTGGCC GAGATCGCCG ACAGCGTGCG CGGCTACAAG
GCCCGCGCGC GCAAGCAGGC CCGCATCGCC CGCGAGATCC AGCAGCTGCG CGAGAGCGCA
CGCATGTTGA AGGAATCGAT CCCCGAAAAA CACCGCGCCT GCGACGCGCT CGAAGAACAG
GCCGTGCTGC GCGAGGCCCA GCTCGACCCG GCCGCCCGCA AGCTGCTCGC CATGTGGCCA
GACATGCAGA AGGCCTACGC CGGCGACCAC TACGTCGTGA AGATCCGCGA CAAGGAACTG
CGCACCGCGC TGACGCACAC CACGCTCAGC GGCAACAAGA TCCGCAAGGT CGCGCTGCCC
AAGTACGAGG ACCACGGCGA GATCCTGCAG TGGTTGATGC TCGACAACGT GCCGGGCAGC
TTCCCCTACT CCGCCGGCAC CTTCGCGTTC AAGCGCGAGG GCGAGGATCC GACCCGCATG
TTCGCCGGCG AAGGAGACGC CTTCCGCACC AATCGCCGCT TCAAGCTCGT CAGCGAAGGC
ATGCCGGCCA AGCGCCTGTC GACCGCCTTC GACTCGGTCA CGCTCTACGG CAACGATCCC
GATCCGCGCC CGGACATCTA CGGCAAGGTC GGCAACTCGG GTGTCAGCAT CGCCACGCTC
GACGACCTGA AGGTGCTGTA CGACGGCTTC GACCTGTGCT CGCCGACCAC CAGCGTCAGC
ATGACGATCA ACGGCCCGGC GCCGTCGATC CTGGCGATGT TCATGAACAC CGCGATCGAC
CAGCAGCTCG GCAAATTCAA GACCGACAAC GGCCGTGAAC CGACCGACAC AGAAGCCGCC
AAGATCCGCG AATGGGTGCT CGCCAACGTG CGCGGCACGG TGCAGGCCGA CATATTGAAG
GAAGACCAGG GCCAGAACAC CTGCATCTTC TCGACCGAGT TTTCACTCAA GGTGATGGGC
GACATCGCCG AGTATTTCGT GCACCACGAC GTGCGCAATT TCTACTCGGT GTCGATCTCG
GGTTATCACA TCGCCGAAGC AGGCGCGAAT CCGATCTCGC AACTGGCGTT CACGCTGTCG
AACGGCTTCA CCTTCGTCGA AGCCTATCTG GCGCGTGGCA TGCACATCGA TGATTTCGCG
CCGAATCTGA GTTTCTTCTT CAGCAACGGC ATGGACCCCG AATACACCGT GCTGGGTCGC
GTTGCGCGGC GCATCTGGGC GGTGGCGATG CGCGACAAGT ACGGCGCCAA CGAACGCAGC
CAGAAACTCA AATATCACAT CCAGACCTCG GGCCGCAGCC TGCACGCGCA GGAGATCCAG
TTCAACGACA TCCGCACCAC GCTGCAGGCG CTGATCGCGA TCTACGACAA CTGCAACTCG
CTGCACACCA ACGCCTTCGA CGAGGCGATC ACGACGCCGA CCGAAGAATC GGTGCGCCGC
GCGATGGCGA TTCAATTGAT CATCAACCGC GAATGGGGCC TGGCGAAAAA CGAGAACCCG
AACCAGGGCG CCTTCATCAT CGACGAGCTG ACCGAGCTGG TCGAAGAAAT GGTGCTGCAG
GAATTCGAGA AGATCGCCGA CCGCGGCGGC GTACTGGGTG CGATGGAAAC CGGCTACCAG
CGCAGCAAGA TCCAGGAAGA GTCGATGCAT TACGAGATGC AGAAACACAC CGGCGAATAC
CCGATCATCG GCGTCAACAC CTTCCGCAAT CCGCACGGCG ACGAATTGAA CGGGCCGCTC
GAACTGGCGC GTTCGACCGA CGAGGAAAAG CAGTCGCAGT TGCAGCGGCT GGCCGATTTC
CATGCCCGCC ACGCCGCTGA GGCGCCGGCG ATGCTCGATC GCCTCAAGCA GGCAGTGATC
GCCAACACCA ACGTGTTCGA GGTGCTGATG GACGCGGTGC GGTGCTGCTC GCTGGGGCAG
ATCACGAATG CGTTGTTCGA GGTGGGCGGG CAGTATCGGC GCAGCATGTG A
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| Protein sequence | MTQLSADYQA LANYRPQHKV RFVTAASLFD GHDAAINIMR RILQGMGAEV IHLGHNRSVD
EVVTAALQED VQGIAVSSYQ GGHTEYFKYM VELLKARGGE HIQVFGGGGG VIVPSEIKDL
ADHGVRIFSP EDGQRMGLAG MIGEMVMRCD RDLSSFAPGE LAALQGHGEA AWRALAQLIT
ALENGKADAS LVATLHDAAK GCPTPVLGIT GTGGAGKSSL TDELIRRIRL DQDDSLRIAV
ISIDPSRRKS GGALLGDRIR MNATGPWQQG PRVYVRSLAT RDTGSEVSAA LPDVLAAAKV
AGFDLIIVET SGIGQGDAAI VPLVDVPMYV MTPEFGAASQ LEKIDMLDFA EFVAINKFDR
KGAADALRDV AKQVQRNRGD FSVMPDAMPV FGTMASRFND DGVTALYQAL KVRLAALGLP
LKDGRLPLVS TRHSTHQTPV VPGARVRYLA EIADSVRGYK ARARKQARIA REIQQLRESA
RMLKESIPEK HRACDALEEQ AVLREAQLDP AARKLLAMWP DMQKAYAGDH YVVKIRDKEL
RTALTHTTLS GNKIRKVALP KYEDHGEILQ WLMLDNVPGS FPYSAGTFAF KREGEDPTRM
FAGEGDAFRT NRRFKLVSEG MPAKRLSTAF DSVTLYGNDP DPRPDIYGKV GNSGVSIATL
DDLKVLYDGF DLCSPTTSVS MTINGPAPSI LAMFMNTAID QQLGKFKTDN GREPTDTEAA
KIREWVLANV RGTVQADILK EDQGQNTCIF STEFSLKVMG DIAEYFVHHD VRNFYSVSIS
GYHIAEAGAN PISQLAFTLS NGFTFVEAYL ARGMHIDDFA PNLSFFFSNG MDPEYTVLGR
VARRIWAVAM RDKYGANERS QKLKYHIQTS GRSLHAQEIQ FNDIRTTLQA LIAIYDNCNS
LHTNAFDEAI TTPTEESVRR AMAIQLIINR EWGLAKNENP NQGAFIIDEL TELVEEMVLQ
EFEKIADRGG VLGAMETGYQ RSKIQEESMH YEMQKHTGEY PIIGVNTFRN PHGDELNGPL
ELARSTDEEK QSQLQRLADF HARHAAEAPA MLDRLKQAVI ANTNVFEVLM DAVRCCSLGQ
ITNALFEVGG QYRRSM
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