| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2188 |
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| Symbol | |
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| ID | 5695034 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 2657588 |
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| End bp | 2660848 |
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| Gene Length | 3261 bp |
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| Protein Length | 1086 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641264792 |
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| Product | methylmalonyl-CoA mutase, large subunit |
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| Protein accession | YP_001530069 |
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| Protein GI | 158522199 |
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| COG category | [E] Amino acid transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1703] Putative periplasmic protein kinase ArgK and related GTPases of G3E family
[COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00063386 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCAGT CGACCTATAA GCCGAAACAC GCCGTCCGGG TGGTGACCGC CACCTCCCTG
TTTGACGGCC ATGACGCGGC CATCAACATC ATGCGCCGCA TGCTTCAGGA CACCGGGGTG
GAGGTGATTC ACCTGGGTCA CAACCGCTCG GCCACTGAAA TCGTGGACGC GGCTGTTGCC
GAGGATGCCC ATGGCATTGC CGTTTCCAGC TACCAGGGCG GTCACATGGA GTTTTTTAAA
TACATTCTCG AGCTGCTGAA AGAGAAGGAT GCGGCCCATA TAAAGGTGTT CGGCGGCGGC
GGCGGCGTGA TCGTGCCCGA CGAAATTCGC GAACTGGAGG CCTGCGGTGT GACAAAGATA
TATTCACCCG ACGACGGGGC GAATATGGGC TTGCAGGGCA TGATCAACCA CATGGTACGG
CAGCTTGATT TTGTCACGGT GGGCCGGAAA AAGGTGGACC TGTCACACCT GTCCGTTGAC
CGTCCCCTGG AAGTGGCCCG AATGATTACC CGGGCCGGCC TTAAAAGCCC GCAATCCGGC
GGCCTGGCCA AGACGGCCAA AAGGCTCCTG GCGGCTCAGG CCCGGGAGCG CCGGGTGCCG
GTGGTGGGCA TTACCGGTAC CGGTGGCGCG GGAAAATCGT CTCTCACCGA TGAGCTGATC
CTGCGGTTTC TGATGGACAC GAAAAAGCTT CGCGTGGCGG TCCTCTGCGT GGACCCCTCC
CGGCGCAAGA GCGGCGGGGC GTTGCTGGGA GACCGGATTC GCATGAACGC CATCACCGAT
TCCCGTGTCT ACATGCGCAG CCTGGCCACA CGGGCGTCCG CGACCGAGCT GCCCCCGGCC
ATGGCCGACA TCATTCATAT TGTCAAGGCC GCCGGGTTTG ACCTGGTGAT GGTGGAAACC
GCGGGCATCG GCCAGGGGGA CTCCCGCATT CATGACCTGG TGGATGTGTC GCTTTACGTG
ATGACCAGCG AATTCGGGGC CGCTTCCCAG CTTGAGAAAA TCGACATGCT GGACTTTGCC
GATATTGTGG CCATCAATAA ATTTGACAAG CAGGGGTCCG AGGACGCCCT TCGGGACGTT
CGCAAGCAGC TTCAGCGTAA TCGCAAGTCC TTTGATTTAC CGGTGGAAAC CATGCCGGTG
TTCGGCACCA TGGCGGCCCG GTTCAACGAT GAAGGGGTCA CGGCCCTGTA TCACGGCCTG
CTGGACGCCA TTTGCCAGAA AACCGGGGTA AACTGGACAT CGTCTCTGAC CCGGCCCGTT
GTAACCACTT CCGGGGCCAG GTCTATTATC GTGCCGCCGG AACGGGTCCG CTATCTTTCC
GAGATTGCCG ACACGGTGCG GGCCTACCAC GGCCGCACTG CGGACCAGGC CGACGCCCTA
AGGGCGTGCT GGCACCTTGA GGAGGTAAAA CAGCGCCTGG CCGCCGAAGG CGACAAACCA
TCGGCCAGGG CCCTGGACAA GACCCTGGCC GATGCCAGGA AAAAGGTGAC GGCTGAAACG
CTGGGCCTGA TGAAGCAGTG GGACGAGATG CGGGCCCATC ACGACAGCGG CGAAATGGTC
TACAGTGTCA GAGGACGCGA GATCAAAGCC CCGCTTTATT GCCGGTCCCT GTCCGGCACG
CCTGTTCCCA GAGTATCCCT GCCCGACTTT GCCGATCCGG GCCAGCGGTA TCAATGGATG
CGCCAGGAGA ATCTGCCGGG CCGGTTTCCT TACACGGCCG GGGTCTACCC CCTTAAACGG
TCCGAAGAAG ACCCCACCCG CATGTTTGCC GGTGAAGGGG ACCCGGCCCG GACCAACCGG
CGCTTTAAGC TGCTGTCGGA AAATTCAGAG GCCAAGCGGC TTTCCACGGC CTTTGATTCA
GTGACCCTGT ACGGTTACGA CCCGGAAAAG CGGCCCGACA TCTACGGCAA GGTGGGCACC
TCCGGGGTGA GCGTATGCTC GCTGGAGGAC GTAAAGACCC TTTATGACGG GTTTGACCTG
TGCGCGCCCA ACACATCGGT TTCCATGACC ATCAACGGCC CGGCCCCGAT CATGCTGGCC
ATGTTTTTTA ATGCCGCCAT TGATCAGCAG GTGGAAAAGG CCGAGGCAAA AAAGAAAAGA
AAGCTGTCGG CCGTTGAGCG GATCGACATC GTCAAGCACG TGCTTTCCAC CATTCGGGGG
ACGGTCCAGG CCGACATTTT AAAAGAGGAC CAGGGTCAGA ATACCTGCAT TTTTTCCGTG
GCGTTCGCGC TTAAAATGAT GGGCGACATT CAGGACTTTT TCATCAAAAA CCGTGTGCGA
AACTTCTATT CTGTTTCGGT GTCCGGCTAT CATATTGCCG AGGCCGGTGC CAACCCCATC
ACCCAGCTGG CCTTTACCCT GGCCAACGGG TTTACCTACC TGGAGTATTA CCTTTCACGG
GGCATGGACA TCGACAATTT TGCCCCCAAT TTTTCATTCT TCTTTTCCAA CGGCATGGAC
CCGGAATACA CGGTGATCGG CCGTGTGGCC CGCCGCATCT GGGCCGTGGC CTTGAAGGAA
AAATACGGGG CTGCCGAGCG GTCCCGCATG CTCAAGTACC ATATTCAGAC ATCGGGCCGG
TCCCTGCACA GCCGGGAGAT TCAGTTCAAC GATATCCGCA CCACGCTTCA GGCCCTGTGC
GCCATCTACG ATAACTGCAA CAGCCTTCAC ACCAACGCTT ATGACGAGGC CATTACTACG
CCCAGCGACG AATCGGTACG CCGGGCCCTG GCCATTCAGC AGATCATCAA CCGGGAATGG
GGGCTGGCCA AAAACGAGAA CCCCAACCAG GGCAGCTTTA TCGTGGAAGA GCTGACAAAG
CTGGTGGAAG AGGCGGTGCT GATGGAATTC GACCGGATCA CGGCCCGGGG CGGGGTTCTG
GGTGCCATGG AAACCGGGTA CCAGCGCAGC CGCATTCAGG AAGAGTCCAT GCACTATGAA
CGGCTCAAGC ATACCGGAGA ACTGCCGGTG GTGGGGGTCA ATACTTTCCT GCGGCCAGAC
AGCGCGGACG GCGGCGAGAC CGGCCCCCTG GTGCTGGCCA GGGCCACGGA GGCGGAAAAG
CGGTCCCAGC TTCGGCGCCT GGCCGCCTTT CACAAAAAGA ACGCCAACCG GTCGGAACAG
GCTTTAGAAG AGTTGAAGCA GACCGTTCTT TCCGGGGAAA ATATTTTCGC CCGCCTGATG
GAGACGGTGC GGTGTTGTTC TCTGGGCCAG ATCACGCAGA CGTTGTACCG GGTGGGGGGG
CAATACAGGA GAGGGATGTA A
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| Protein sequence | MDQSTYKPKH AVRVVTATSL FDGHDAAINI MRRMLQDTGV EVIHLGHNRS ATEIVDAAVA
EDAHGIAVSS YQGGHMEFFK YILELLKEKD AAHIKVFGGG GGVIVPDEIR ELEACGVTKI
YSPDDGANMG LQGMINHMVR QLDFVTVGRK KVDLSHLSVD RPLEVARMIT RAGLKSPQSG
GLAKTAKRLL AAQARERRVP VVGITGTGGA GKSSLTDELI LRFLMDTKKL RVAVLCVDPS
RRKSGGALLG DRIRMNAITD SRVYMRSLAT RASATELPPA MADIIHIVKA AGFDLVMVET
AGIGQGDSRI HDLVDVSLYV MTSEFGAASQ LEKIDMLDFA DIVAINKFDK QGSEDALRDV
RKQLQRNRKS FDLPVETMPV FGTMAARFND EGVTALYHGL LDAICQKTGV NWTSSLTRPV
VTTSGARSII VPPERVRYLS EIADTVRAYH GRTADQADAL RACWHLEEVK QRLAAEGDKP
SARALDKTLA DARKKVTAET LGLMKQWDEM RAHHDSGEMV YSVRGREIKA PLYCRSLSGT
PVPRVSLPDF ADPGQRYQWM RQENLPGRFP YTAGVYPLKR SEEDPTRMFA GEGDPARTNR
RFKLLSENSE AKRLSTAFDS VTLYGYDPEK RPDIYGKVGT SGVSVCSLED VKTLYDGFDL
CAPNTSVSMT INGPAPIMLA MFFNAAIDQQ VEKAEAKKKR KLSAVERIDI VKHVLSTIRG
TVQADILKED QGQNTCIFSV AFALKMMGDI QDFFIKNRVR NFYSVSVSGY HIAEAGANPI
TQLAFTLANG FTYLEYYLSR GMDIDNFAPN FSFFFSNGMD PEYTVIGRVA RRIWAVALKE
KYGAAERSRM LKYHIQTSGR SLHSREIQFN DIRTTLQALC AIYDNCNSLH TNAYDEAITT
PSDESVRRAL AIQQIINREW GLAKNENPNQ GSFIVEELTK LVEEAVLMEF DRITARGGVL
GAMETGYQRS RIQEESMHYE RLKHTGELPV VGVNTFLRPD SADGGETGPL VLARATEAEK
RSQLRRLAAF HKKNANRSEQ ALEELKQTVL SGENIFARLM ETVRCCSLGQ ITQTLYRVGG
QYRRGM
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