More than 300 homologs were found in PanDaTox collection
for query gene Namu_4223 on replicon NC_013235
Organism: Nakamurella multipartita DSM 44233



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013235  Namu_4223  two component transcriptional regulator, winged helix family  100 
 
 		 226 aa  447  1e-125  Nakamurella multipartita DSM 44233  Bacteria  decreased coverage  0.000102305  normal  0.0938221 
 
 
-
 
NC_013093  Amir_6380  two component transcriptional regulator, winged helix family  68.89 
 
 		 223 aa  285  5e-76  Actinosynnema mirum DSM 43827  Bacteria  normal  0.654273  n/a   
 
 
-
 
NC_013159  Svir_05980  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  67.97 
 
 		 230 aa  273  2.0000000000000002e-72  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  0.553702 
 
 
-
 
NC_014158  Tpau_1046  two component transcriptional regulator, winged helix family  63.2 
 
 		 230 aa  271  8.000000000000001e-72  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.0213528  n/a   
 
 
-
 
NC_014165  Tbis_0707  winged helix family two component transcriptional regulator  58.85 
 
 		 222 aa  245  4.9999999999999997e-64  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_1333  response regulator receiver protein  58.93 
 
 		 222 aa  244  9e-64  Streptosporangium roseum DSM 43021  Bacteria  normal  0.40527  normal  0.1595 
 
 
-
 
NC_013510  Tcur_4122  two component transcriptional regulator, winged helix family  57.14 
 
 		 223 aa  239  2e-62  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_013131  Caci_0835  two component transcriptional regulator, winged helix family  57.78 
 
 		 222 aa  236  1e-61  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  hitchhiker  0.0000000540746 
 
 
-
 
NC_013172  Bfae_21090  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  55.22 
 
 		 231 aa  234  1.0000000000000001e-60  Brachybacterium faecium DSM 4810  Bacteria  normal  0.664911  n/a   
 
 
-
 
NC_014151  Cfla_2389  two component transcriptional regulator, winged helix family  58.44 
 
 		 240 aa  233  1.0000000000000001e-60  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0687652  decreased coverage  0.0000973314 
 
 
-
 
NC_007333  Tfu_2549  response regulator receiver  56.64 
 
 		 222 aa  233  2.0000000000000002e-60  Thermobifida fusca YX  Bacteria  normal  1  n/a   
 
 
-
 
NC_014210  Ndas_3846  two component transcriptional regulator, winged helix family  56.19 
 
 		 222 aa  232  3e-60  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013174  Jden_1871  two component transcriptional regulator, winged helix family  56.33 
 
 		 226 aa  230  1e-59  Jonesia denitrificans DSM 20603  Bacteria  normal  0.105791  normal  0.266081 
 
 
-
 
NC_013521  Sked_08510  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  55.22 
 
 		 227 aa  227  1e-58  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.103906  normal  0.575645 
 
 
-
 
NC_013441  Gbro_1844  response regulator receiver  61.06 
 
 		 224 aa  226  3e-58  Gordonia bronchialis DSM 43247  Bacteria  normal  0.0160507  n/a   
 
 
-
 
NC_013530  Xcel_2599  two component transcriptional regulator, winged helix family  52.4 
 
 		 227 aa  224  7e-58  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_012669  Bcav_1155  two component transcriptional regulator, winged helix family  56.52 
 
 		 230 aa  222  4e-57  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.560017  normal  1 
 
 
-
 
NC_009523  RoseRS_3818  two component transcriptional regulator  47.83 
 
 		 230 aa  191  6e-48  Roseiflexus sp. RS-1  Bacteria  normal  0.386967  normal  0.165932 
 
 
-
 
NC_013169  Ksed_08380  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  51.98 
 
 		 244 aa  191  8e-48  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0276649  normal  0.165598 
 
 
-
 
NC_008148  Rxyl_2983  two component transcriptional regulator  49.12 
 
 		 228 aa  189  4e-47  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_0997  two component transcriptional regulator  46.96 
 
 		 230 aa  184  9e-46  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.679101  normal  1 
 
 
-
 
NC_007333  Tfu_2910  response regulator receiver  46.09 
 
 		 230 aa  183  2.0000000000000003e-45  Thermobifida fusca YX  Bacteria  normal  1  n/a   
 
 
-
 
NC_013131  Caci_8215  two component transcriptional regulator, winged helix family  47.39 
 
 		 226 aa  183  2.0000000000000003e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008699  Noca_4422  response regulator receiver  47.81 
 
 		 237 aa  183  2.0000000000000003e-45  Nocardioides sp. JS614  Bacteria  normal  0.259959  n/a   
 
 
-
 
NC_014210  Ndas_4322  two component transcriptional regulator, winged helix family  46.96 
 
 		 231 aa  183  2.0000000000000003e-45  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013510  Tcur_0700  two component transcriptional regulator, winged helix family  46.96 
 
 		 226 aa  181  1e-44  Thermomonospora curvata DSM 43183  Bacteria  normal  0.768939  n/a   
 
 
-
 
NC_009921  Franean1_6145  two component transcriptional regulator  46.32 
 
 		 228 aa  179  2.9999999999999997e-44  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.788201 
 
 
-
 
NC_011831  Cagg_1100  two component transcriptional regulator, winged helix family  45.45 
 
 		 236 aa  178  4.999999999999999e-44  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  unclonable  0.0000000182155 
 
 
-
 
NC_012803  Mlut_03750  PhoP-like protein  43.04 
 
 		 226 aa  176  2e-43  Micrococcus luteus NCTC 2665  Bacteria  normal  0.181369  n/a   
 
 
-
 
NC_007333  Tfu_0343  response regulator receiver  46.7 
 
 		 232 aa  176  2e-43  Thermobifida fusca YX  Bacteria  normal  0.86362  n/a   
 
 
-
 
NC_009921  Franean1_5311  two component transcriptional regulator  43.75 
 
 		 246 aa  176  2e-43  Frankia sp. EAN1pec  Bacteria  normal  0.554395  normal  0.310406 
 
 
-
 
NC_008699  Noca_1240  response regulator receiver  46.02 
 
 		 234 aa  175  4e-43  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_009921  Franean1_3859  two component transcriptional regulator  47.98 
 
 		 235 aa  174  9.999999999999999e-43  Frankia sp. EAN1pec  Bacteria  normal  0.0389848  normal  1 
 
 
-
 
NC_010718  Nther_0984  two component transcriptional regulator, winged helix family  39.27 
 
 		 246 aa  173  1.9999999999999998e-42  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  0.0723779 
 
 
-
 
NC_007413  Ava_3369  two component transcriptional regulator  44.21 
 
 		 250 aa  172  3.9999999999999995e-42  Anabaena variabilis ATCC 29413  Bacteria  normal  0.881494  normal  0.845013 
 
 
-
 
NC_013595  Sros_6397  response regulator receiver protein  46.49 
 
 		 237 aa  172  3.9999999999999995e-42  Streptosporangium roseum DSM 43021  Bacteria  normal  0.680662  normal  0.0804167 
 
 
-
 
NC_014165  Tbis_0499  winged helix family two component transcriptional regulator  45.02 
 
 		 229 aa  172  5e-42  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009972  Haur_0804  two component transcriptional regulator  44.59 
 
 		 236 aa  171  7.999999999999999e-42  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.324741  n/a   
 
 
-
 
NC_008541  Arth_0724  two component transcriptional regulator  43.04 
 
 		 226 aa  171  9e-42  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_5447  response regulator receiver protein  45.18 
 
 		 228 aa  170  1e-41  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.00883739  normal  0.15212 
 
 
-
 
NC_008699  Noca_4046  response regulator receiver  44.54 
 
 		 225 aa  170  1e-41  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_010816  BLD_1073  putative response regulator  40.68 
 
 		 234 aa  170  2e-41  Bifidobacterium longum DJO10A  Bacteria  normal  1  n/a   
 
 
-
 
NC_011886  Achl_0850  two component transcriptional regulator, winged helix family  43.04 
 
 		 226 aa  170  2e-41  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  1 
 
 
-
 
NC_013093  Amir_6749  two component transcriptional regulator, winged helix family  42.86 
 
 		 226 aa  170  2e-41  Actinosynnema mirum DSM 43827  Bacteria  normal  0.290774  n/a   
 
 
-
 
NC_009972  Haur_2799  two component transcriptional regulator  44.39 
 
 		 236 aa  169  3e-41  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000368356  n/a   
 
 
-
 
NC_013174  Jden_2083  two component transcriptional regulator, winged helix family  42.86 
 
 		 237 aa  169  4e-41  Jonesia denitrificans DSM 20603  Bacteria  normal  0.873655  normal  1 
 
 
-
 
NC_013526  Tter_2867  two component transcriptional regulator, winged helix family  42.62 
 
 		 233 aa  168  5e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  1  n/a   
 
 
-
 
NC_014248  Aazo_2741  winged helix family two component transcriptional regulator  42.31 
 
 		 250 aa  168  7e-41  'Nostoc azollae' 0708  Bacteria  normal  0.0957275  n/a   
 
 
-
 
NC_013947  Snas_0580  two component transcriptional regulator, winged helix family  41.13 
 
 		 226 aa  167  8e-41  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_0961  response regulator receiver protein  43.91 
 
 		 229 aa  167  8e-41  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007777  Francci3_2401  two component transcriptional regulator  46.22 
 
 		 283 aa  167  1e-40  Frankia sp. CcI3  Bacteria  normal  0.0476592  normal  0.0197415 
 
 
-
 
NC_013595  Sros_2839  response regulator receiver protein  44.3 
 
 		 228 aa  167  1e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0400316  normal  0.0390199 
 
 
-
 
NC_008578  Acel_1606  two component transcriptional regulator  44 
 
 		 230 aa  167  1e-40  Acidothermus cellulolyticus 11B  Bacteria  normal  0.307098  normal  0.688459 
 
 
-
 
NC_008578  Acel_0088  two component transcriptional regulator  41.56 
 
 		 228 aa  166  2e-40  Acidothermus cellulolyticus 11B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013757  Gobs_4602  two component transcriptional regulator, winged helix family  43.04 
 
 		 226 aa  166  2.9999999999999998e-40  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_3354  two component transcriptional regulator  44.49 
 
 		 220 aa  166  2.9999999999999998e-40  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.44436  normal  1 
 
 
-
 
NC_013739  Cwoe_5905  two component transcriptional regulator, winged helix family  42.17 
 
 		 237 aa  166  2.9999999999999998e-40  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008146  Mmcs_0661  two component transcriptional regulator  42.49 
 
 		 228 aa  165  5e-40  Mycobacterium sp. MCS  Bacteria  normal  1  n/a   
 
 
-
 
NC_008705  Mkms_0674  two component transcriptional regulator  42.49 
 
 		 228 aa  165  5e-40  Mycobacterium sp. KMS  Bacteria  normal  1  normal  0.850641 
 
 
-
 
NC_009077  Mjls_0654  two component transcriptional regulator  42.49 
 
 		 228 aa  165  5e-40  Mycobacterium sp. JLS  Bacteria  normal  1  normal  0.682961 
 
 
-
 
NC_014151  Cfla_1221  two component transcriptional regulator, winged helix family  43.7 
 
 		 256 aa  164  6.9999999999999995e-40  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.655279  normal  1 
 
 
-
 
NC_008578  Acel_1595  two component transcriptional regulator  43.95 
 
 		 227 aa  164  6.9999999999999995e-40  Acidothermus cellulolyticus 11B  Bacteria  normal  0.526383  normal  0.570373 
 
 
-
 
NC_009953  Sare_1768  two component transcriptional regulator  42.42 
 
 		 229 aa  164  8e-40  Salinispora arenicola CNS-205  Bacteria  normal  0.0372211  hitchhiker  0.00235645 
 
 
-
 
NC_009565  TBFG_10499  two component system sensor transduction protein regX3  42.24 
 
 		 227 aa  164  9e-40  Mycobacterium tuberculosis F11  Bacteria  decreased coverage  2.46064e-66  normal  1 
 
 
-
 
NC_013947  Snas_4021  two component transcriptional regulator, winged helix family  40.97 
 
 		 235 aa  164  9e-40  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011830  Dhaf_1237  two component transcriptional regulator, winged helix family  42.42 
 
 		 234 aa  164  1.0000000000000001e-39  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.178035  n/a   
 
 
-
 
NC_013124  Afer_0200  two component transcriptional regulator, winged helix family  42.67 
 
 		 242 aa  164  1.0000000000000001e-39  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.0955644  n/a   
 
 
-
 
NC_013205  Aaci_2570  two component transcriptional regulator, winged helix family  38.89 
 
 		 239 aa  164  1.0000000000000001e-39  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_013172  Bfae_09290  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  41.81 
 
 		 229 aa  164  1.0000000000000001e-39  Brachybacterium faecium DSM 4810  Bacteria  normal  1  n/a   
 
 
-
 
NC_008699  Noca_1559  response regulator receiver  44.2 
 
 		 228 aa  164  1.0000000000000001e-39  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_008726  Mvan_0831  two component transcriptional regulator  41.63 
 
 		 228 aa  164  1.0000000000000001e-39  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.310785  normal  1 
 
 
-
 
NC_013169  Ksed_03700  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  40.87 
 
 		 226 aa  164  1.0000000000000001e-39  Kytococcus sedentarius DSM 20547  Bacteria  normal  1  normal  0.132847 
 
 
-
 
NC_009338  Mflv_0082  two component transcriptional regulator  40.95 
 
 		 228 aa  164  1.0000000000000001e-39  Mycobacterium gilvum PYR-GCK  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011729  PCC7424_3600  two component transcriptional regulator, winged helix family  40.69 
 
 		 250 aa  164  1.0000000000000001e-39  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00284005 
 
 
-
 
NC_011661  Dtur_1237  two component transcriptional regulator, winged helix family  39.74 
 
 		 232 aa  164  1.0000000000000001e-39  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_1487  two component transcriptional regulator, winged helix family  38.96 
 
 		 232 aa  163  2.0000000000000002e-39  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.487145  n/a   
 
 
-
 
NC_014158  Tpau_3286  two component transcriptional regulator, winged helix family  42.86 
 
 		 228 aa  163  2.0000000000000002e-39  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.167791  n/a   
 
 
-
 
NC_012669  Bcav_1276  two component transcriptional regulator, winged helix family  43.7 
 
 		 242 aa  163  2.0000000000000002e-39  Beutenbergia cavernae DSM 12333  Bacteria  normal  1  normal  0.114994 
 
 
-
 
NC_013159  Svir_02690  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  42.49 
 
 		 229 aa  163  2.0000000000000002e-39  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010001  Cphy_2855  two component transcriptional regulator  38.22 
 
 		 224 aa  163  2.0000000000000002e-39  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000000952101  n/a   
 
 
-
 
NC_013093  Amir_5007  two component transcriptional regulator, winged helix family  43.91 
 
 		 238 aa  163  2.0000000000000002e-39  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013171  Apre_1374  two component transcriptional regulator, winged helix family  39.91 
 
 		 219 aa  163  2.0000000000000002e-39  Anaerococcus prevotii DSM 20548  Bacteria  hitchhiker  0.0000555295  n/a   
 
 
-
 
NC_013947  Snas_4873  two component transcriptional regulator, winged helix family  43.61 
 
 		 228 aa  163  2.0000000000000002e-39  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0727597  normal  0.414949 
 
 
-
 
NC_011661  Dtur_0537  two component transcriptional regulator, winged helix family  36.61 
 
 		 224 aa  163  2.0000000000000002e-39  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0716782  n/a   
 
 
-
 
NC_013235  Namu_4929  two component transcriptional regulator, winged helix family  41.74 
 
 		 226 aa  162  3e-39  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009523  RoseRS_0188  two component transcriptional regulator  41.77 
 
 		 245 aa  162  3e-39  Roseiflexus sp. RS-1  Bacteria  hitchhiker  0.00347389  normal  0.0545477 
 
 
-
 
NC_008699  Noca_2062  two component transcriptional regulator  44.2 
 
 		 228 aa  162  3e-39  Nocardioides sp. JS614  Bacteria  normal  0.0133309  n/a   
 
 
-
 
NC_014210  Ndas_4793  two component transcriptional regulator, winged helix family  42.04 
 
 		 219 aa  162  4.0000000000000004e-39  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.732153 
 
 
-
 
NC_013174  Jden_1802  two component transcriptional regulator, winged helix family  45.53 
 
 		 232 aa  162  4.0000000000000004e-39  Jonesia denitrificans DSM 20603  Bacteria  normal  0.150286  normal  1 
 
 
-
 
NC_009380  Strop_1781  response regulator receiver  42.54 
 
 		 226 aa  162  4.0000000000000004e-39  Salinispora tropica CNB-440  Bacteria  normal  0.365073  normal  1 
 
 
-
 
NC_009565  TBFG_11051  two component system transcriptional regulator trcR  42.41 
 
 		 257 aa  162  5.0000000000000005e-39  Mycobacterium tuberculosis F11  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007777  Francci3_0471  two component transcriptional regulator  44.78 
 
 		 226 aa  162  6e-39  Frankia sp. CcI3  Bacteria  normal  1  normal  0.734397 
 
 
-
 
NC_013595  Sros_1549  response regulator receiver protein  44.69 
 
 		 241 aa  161  7e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0273908  normal  1 
 
 
-
 
NC_007644  Moth_1478  two component transcriptional regulator  45.25 
 
 		 240 aa  161  7e-39  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.0000111909  normal  1 
 
 
-
 
NC_007614  Nmul_A2231  two component transcriptional regulator  38.33 
 
 		 234 aa  161  8.000000000000001e-39  Nitrosospira multiformis ATCC 25196  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_4351  two component transcriptional regulator  41.35 
 
 		 245 aa  161  8.000000000000001e-39  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.110039  normal  1 
 
 
-
 
NC_013757  Gobs_1316  two component transcriptional regulator, winged helix family  44.59 
 
 		 232 aa  161  9e-39  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_009632  SaurJH1_1505  response regulator receiver  38.05 
 
 		 219 aa  161  9e-39  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.404603  n/a   
 
 
-
 
NC_011146  Gbem_1865  two component transcriptional regulator, winged helix family  38.96 
 
 		 226 aa  161  9e-39  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_012560  Avin_18630  Response regulator, two-component  44.59 
 
 		 219 aa  161  9e-39  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
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