| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_05980 |
|---|
| Symbol | |
|---|
| ID | 8385936 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 609779 |
|---|
| End bp | 610471 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644974695 |
|---|
| Product | response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein |
|---|
| Protein accession | YP_003132496 |
|---|
| Protein GI | 257054664 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.553702 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTCCTAC TTGCCGAAGA TGATCCGGCG ATTGCCGAAC CCCTGTCGCG CGCGTTGCGC
CGGGAAGGGT ACGAGGTAAC GGTCGTCGCC GACGGCCCGT CGGCGTTGGA CACGGCAGCG
CAGGACCGGA TTGATCTACT GGTGCTCGAT CTGGGACTGC CGGGCATGGA CGGACTGGAG
GTGTGCCGGC GGCTGAGAGC TACCGACCGG ACGCTGCCGG TGCTCATGTT GACGGCCAGA
ACCGACGAGG TGGACTTCGT CGTGGGCCTC GACGCGGGCG CTGATGACTA CGTGGCCAAA
CCGTTCCGTC TCGCCGAACT TCTGGCTCGC ATTCGGGCGT TGCTGCGCAG ACGTGCGCCC
GAGGTGTTGG AGTCGGGTGG TGTGCGGATG GACGTCGGCG CCAGAGTCGT CACGGTGGAC
GGCTGTGAGG TGGCGTTGGC GAACAAGGAG TTCGAGCTGC TGCGGGTGCT GTTGGCCAAG
GCGGGCCAGG TCGTGAGCAG GGAGGAGATC CTGTCGGAGG TGTGGAACGA CCTCGACCCG
GAGACGTCGA AGACCTCGAA GACACTCGAC ATGCACATGT CGTGGCTGCG ACGCAAACTC
GCCCGGGCCC GTTTCGGCGA GGAGGGTCGC AGAGCCGGCA GTGAGTGCAT CGCGACCGTC
CGTGGTGTTG GGTTCCGGTT CAACACCGAT TAG
|
|---|
| Protein sequence | MVLLAEDDPA IAEPLSRALR REGYEVTVVA DGPSALDTAA QDRIDLLVLD LGLPGMDGLE
VCRRLRATDR TLPVLMLTAR TDEVDFVVGL DAGADDYVAK PFRLAELLAR IRALLRRRAP
EVLESGGVRM DVGARVVTVD GCEVALANKE FELLRVLLAK AGQVVSREEI LSEVWNDLDP
ETSKTSKTLD MHMSWLRRKL ARARFGEEGR RAGSECIATV RGVGFRFNTD
|
|---|
| |