More than 300 homologs were found in PanDaTox collection
for query gene Dhaf_0805 on replicon NC_011830
Organism: Desulfitobacterium hafniense DCB-2



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011830  Dhaf_0805  nickel-dependent hydrogenase large subunit  100 
 
 
465 aa  968    Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1787  nickel-dependent hydrogenase large subunit  39.19 
 
 
481 aa  363  5.0000000000000005e-99  Ammonifex degensii KC4  Bacteria  normal  0.993845  n/a   
 
 
-
 
NC_011898  Ccel_1071  nickel-dependent hydrogenase large subunit  40.6 
 
 
470 aa  360  3e-98  Clostridium cellulolyticum H10  Bacteria  normal  0.018808  n/a   
 
 
-
 
NC_010424  Daud_1940  hydrogen:quinone oxidoreductase  41.19 
 
 
475 aa  357  2.9999999999999997e-97  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1231  nickel-dependent hydrogenase large subunit  39.3 
 
 
458 aa  345  1e-93  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1042  nickel-dependent hydrogenase, large subunit  37.42 
 
 
485 aa  330  3e-89  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.90765  n/a   
 
 
-
 
NC_002936  DET0110  [Ni/Fe] hydrogenase, group 1, large subunit, putative  34.31 
 
 
526 aa  311  1e-83  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_03860  nickel-dependent hydrogenase large subunit  35.82 
 
 
470 aa  310  4e-83  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_120  Ni/Fe hydrogenase, large subunit  34.11 
 
 
526 aa  309  5.9999999999999995e-83  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0258  nickel-dependent hydrogenase, large subunit  34.11 
 
 
526 aa  307  3e-82  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1248  nickel-dependent hydrogenase, large subunit  34.39 
 
 
488 aa  284  2.0000000000000002e-75  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.210122 
 
 
-
 
NC_011830  Dhaf_2742  Hydrogen:quinone oxidoreductase  35.18 
 
 
518 aa  283  5.000000000000001e-75  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000126046  n/a   
 
 
-
 
NC_011830  Dhaf_3270  nickel-dependent hydrogenase large subunit  32.88 
 
 
517 aa  280  5e-74  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1969  nickel-dependent hydrogenase large subunit  33.47 
 
 
514 aa  279  6e-74  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.668451  n/a   
 
 
-
 
NC_011769  DvMF_0273  nickel-dependent hydrogenase large subunit  33.33 
 
 
488 aa  278  1e-73  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.328721 
 
 
-
 
NC_007519  Dde_2135  periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing  34.25 
 
 
488 aa  276  4e-73  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3756  periplasmic (NiFe) hydrogenase, large subunit, isozyme 2  30.97 
 
 
554 aa  272  8.000000000000001e-72  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2055  nickel-dependent hydrogenase large subunit  31.51 
 
 
566 aa  271  2e-71  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0873  nickel-dependent hydrogenase, large subunit  32.22 
 
 
569 aa  271  2e-71  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3404  nickel-dependent hydrogenase large subunit  31.82 
 
 
573 aa  270  5e-71  Frankia sp. EAN1pec  Bacteria  normal  0.37903  normal 
 
 
-
 
NC_013173  Dbac_0766  nickel-dependent hydrogenase large subunit  31.43 
 
 
569 aa  269  5.9999999999999995e-71  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0544  nickel-dependent hydrogenase, large subunit  31.86 
 
 
566 aa  269  7e-71  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_1038  nickel-dependent hydrogenase large subunit  31.43 
 
 
558 aa  266  7e-70  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.368471  n/a   
 
 
-
 
NC_009523  RoseRS_2320  nickel-dependent hydrogenase, large subunit  31.81 
 
 
570 aa  265  1e-69  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3147  nickel-dependent hydrogenase large subunit  31.63 
 
 
570 aa  265  2e-69  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_0266  nickel-dependent hydrogenase large subunit  30.63 
 
 
566 aa  261  1e-68  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.322067  normal 
 
 
-
 
NC_011769  DvMF_1733  nickel-dependent hydrogenase large subunit  30.63 
 
 
549 aa  261  2e-68  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008639  Cpha266_0973  nickel-dependent hydrogenase, large subunit  32.34 
 
 
572 aa  260  3e-68  Chlorobium phaeobacteroides DSM 266  Bacteria  decreased coverage  0.000120136  n/a   
 
 
-
 
NC_008554  Sfum_2952  nickel-dependent hydrogenase, large subunit  30.22 
 
 
546 aa  257  3e-67  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.437472 
 
 
-
 
NC_007517  Gmet_3331  nickel-dependent hydrogenase, large subunit  30.62 
 
 
566 aa  256  5e-67  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0122  nickel-dependent hydrogenase, large subunit  30.66 
 
 
564 aa  256  8e-67  Geobacter sulfurreducens PCA  Bacteria  normal  0.254382  n/a   
 
 
-
 
NC_007520  Tcr_2037  nickel-dependent hydrogenase, large subunit  31.63 
 
 
568 aa  255  1.0000000000000001e-66  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0270  nickel-dependent hydrogenase large subunit  30.44 
 
 
567 aa  254  2.0000000000000002e-66  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.11146 
 
 
-
 
NC_011060  Ppha_1861  nickel-dependent hydrogenase large subunit  32.52 
 
 
572 aa  254  2.0000000000000002e-66  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_1447  hydrogenase large chain  32.98 
 
 
572 aa  253  4.0000000000000004e-66  Chlorobium luteolum DSM 273  Bacteria  normal  0.333249  normal 
 
 
-
 
NC_008009  Acid345_4240  nickel-dependent hydrogenase, large subunit  30.43 
 
 
563 aa  252  8.000000000000001e-66  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_0856  nickel-dependent hydrogenase large subunit  30.94 
 
 
572 aa  251  2e-65  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_009714  CHAB381_0862  quinone-reactive Ni/Fe-hydrogenase large chain  31.26 
 
 
573 aa  251  2e-65  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1245  nickel-dependent hydrogenase, large subunit  30.44 
 
 
566 aa  251  2e-65  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.11159 
 
 
-
 
NC_008781  Pnap_1954  nickel-dependent hydrogenase, large subunit  32.24 
 
 
485 aa  249  7e-65  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.935689  normal 
 
 
-
 
NC_008825  Mpe_A2806  HupV protein  30.82 
 
 
485 aa  249  9e-65  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1368  nickel-dependent hydrogenase large subunit  31.72 
 
 
571 aa  247  2e-64  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0854  nickel-dependent hydrogenase large subunit  30.12 
 
 
572 aa  246  4.9999999999999997e-64  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.255543 
 
 
-
 
NC_007519  Dde_2138  periplasmic (NiFe) hydrogenase, large subunit, isozyme 1  29.59 
 
 
568 aa  246  4.9999999999999997e-64  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_1435  nickel-dependent hydrogenase, large subunit  30.67 
 
 
577 aa  246  6e-64  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.611833  n/a   
 
 
-
 
NC_009441  Fjoh_3907  nickel-dependent hydrogenase, large subunit  30.07 
 
 
578 aa  245  9e-64  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0147  nickel-dependent hydrogenase large subunit  30.18 
 
 
559 aa  240  2.9999999999999997e-62  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2915  nickel-dependent hydrogenase large subunit  30.82 
 
 
571 aa  239  6.999999999999999e-62  Geobacter sp. M21  Bacteria  n/a    normal  0.289083 
 
 
-
 
NC_008576  Mmc1_2503  nickel-dependent hydrogenase, large subunit  28.67 
 
 
567 aa  239  9e-62  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.153272 
 
 
-
 
NC_007298  Daro_3960  nickel-dependent hydrogenase, large subunit  33.27 
 
 
472 aa  238  1e-61  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2493  nickel-dependent hydrogenase, large subunit  32.12 
 
 
484 aa  238  1e-61  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00408967  normal  0.431982 
 
 
-
 
NC_009049  Rsph17029_2147  nickel-dependent hydrogenase, large subunit  28.32 
 
 
596 aa  238  2e-61  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0605986  normal  0.266797 
 
 
-
 
NC_007493  RSP_0496  hydrogenase protein large subunit  28.32 
 
 
596 aa  238  2e-61  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_12910  Ni,Fe-hydrogenase I large subunit  30.3 
 
 
545 aa  236  5.0000000000000005e-61  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.343906  normal  0.388227 
 
 
-
 
NC_009092  Shew_1764  nickel-dependent hydrogenase, large subunit  30.67 
 
 
568 aa  236  6e-61  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2104  nickel-dependent hydrogenase, large subunit  31.58 
 
 
567 aa  236  7e-61  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0718  nickel-dependent hydrogenase, large subunit  29.52 
 
 
549 aa  236  9e-61  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.338951 
 
 
-
 
NC_009901  Spea_2032  nickel-dependent hydrogenase large subunit  31.22 
 
 
567 aa  236  1.0000000000000001e-60  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0709763  n/a   
 
 
-
 
NC_002939  GSU0785  nickel-dependent hydrogenase, large subunit  29.93 
 
 
560 aa  234  3e-60  Geobacter sulfurreducens PCA  Bacteria  normal  0.433799  n/a   
 
 
-
 
NC_010655  Amuc_2129  nickel-dependent hydrogenase large subunit  31.35 
 
 
585 aa  234  3e-60  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  0.85862  normal 
 
 
-
 
NC_009675  Anae109_3520  nickel-dependent hydrogenase large subunit  29.31 
 
 
567 aa  233  5e-60  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009429  Rsph17025_3375  hypothetical protein  27.98 
 
 
596 aa  231  1e-59  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.281049  normal 
 
 
-
 
NC_010831  Cphamn1_1592  nickel-dependent hydrogenase large subunit  31.73 
 
 
572 aa  232  1e-59  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.663154  normal 
 
 
-
 
NC_011761  AFE_3286  [Ni/Fe] hydrogenase, large subunit  29.58 
 
 
585 aa  231  2e-59  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2884  nickel-dependent hydrogenase large subunit  29.58 
 
 
585 aa  231  2e-59  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.308731  normal 
 
 
-
 
NC_002977  MCA0165  nickel-iron hydrogenase, large subunit  28.79 
 
 
597 aa  231  3e-59  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0497936  n/a   
 
 
-
 
NC_007908  Rfer_4121  hydrogen:quinone oxidoreductase  30.46 
 
 
496 aa  231  3e-59  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B1633  [Ni/Fe] hydrogenase, large subunit  28.64 
 
 
600 aa  230  3e-59  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1995  uptake hydrogenase accessory  29.92 
 
 
479 aa  230  4e-59  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1946  nickel-dependent hydrogenase, large subunit  28.11 
 
 
560 aa  230  5e-59  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1678  hydrogenase large chain  30.67 
 
 
567 aa  230  5e-59  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_2098  quinone-reactive Ni/Fe hydrogenase, large subunit  29.95 
 
 
567 aa  229  6e-59  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011094  SeSA_A1642  [Ni/Fe] hydrogenase, large subunit  28.64 
 
 
600 aa  229  6e-59  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.251142  normal 
 
 
-
 
NC_011205  SeD_A1798  [Ni/Fe] hydrogenase, large subunit  28.64 
 
 
600 aa  229  6e-59  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.570579  normal 
 
 
-
 
NC_011083  SeHA_C1709  [Ni/Fe] hydrogenase large subunit  28.64 
 
 
600 aa  229  6e-59  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A1650  [Ni/Fe] hydrogenase large subunit  28.64 
 
 
600 aa  229  6e-59  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_1147  nickel-dependent hydrogenase large subunit  32.24 
 
 
488 aa  229  7e-59  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011883  Ddes_0836  nickel-dependent hydrogenase large subunit  30.99 
 
 
604 aa  229  7e-59  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0506  nickel-dependent hydrogenase large subunit  30.6 
 
 
577 aa  229  8e-59  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0523  nickel-dependent hydrogenase large subunit  28.45 
 
 
578 aa  229  8e-59  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_2010  nickel-dependent hydrogenase, large subunit  32.17 
 
 
482 aa  228  1e-58  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_0478  nickel-dependent hydrogenase, large subunit  30.24 
 
 
577 aa  228  2e-58  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0511  nickel-dependent hydrogenase large subunit  30.6 
 
 
577 aa  228  2e-58  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3368  nickel-dependent hydrogenase large subunit  30.42 
 
 
570 aa  228  2e-58  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1161  nickel-dependent hydrogenase, large subunit  31.2 
 
 
481 aa  228  2e-58  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2089  nickel-dependent hydrogenase, large subunit  29.76 
 
 
567 aa  228  2e-58  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1821  nickel-dependent hydrogenase, large subunit  29.76 
 
 
567 aa  228  2e-58  Shewanella sp. MR-4  Bacteria  normal  0.545248  normal 
 
 
-
 
NC_008322  Shewmr7_2156  nickel-dependent hydrogenase, large subunit  29.76 
 
 
567 aa  228  2e-58  Shewanella sp. MR-7  Bacteria  normal  0.352792  normal  0.370314 
 
 
-
 
NC_008577  Shewana3_1879  nickel-dependent hydrogenase, large subunit  29.76 
 
 
567 aa  228  2e-58  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1997  uptake hydrogenase large subunit precursor  29.43 
 
 
596 aa  227  3e-58  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1907  nickel-dependent hydrogenase, large subunit  30.52 
 
 
567 aa  227  3e-58  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.022032 
 
 
-
 
NC_009484  Acry_0337  nickel-dependent hydrogenase, large subunit  30.21 
 
 
598 aa  227  4e-58  Acidiphilium cryptum JF-5  Bacteria  normal  0.0168031  n/a   
 
 
-
 
NC_010468  EcolC_0699  hydrogenase 2 large subunit  28.09 
 
 
567 aa  226  6e-58  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1153  nickel-dependent hydrogenase large subunit  31.8 
 
 
481 aa  226  6e-58  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A3329  hydrogenase 2 large subunit  28.09 
 
 
567 aa  226  7e-58  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_013512  Sdel_1105  nickel-dependent hydrogenase large subunit  29.88 
 
 
584 aa  226  7e-58  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0702  nickel-dependent hydrogenase large subunit  28.09 
 
 
567 aa  226  8e-58  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B3320  hydrogenase 2 large subunit  28.09 
 
 
567 aa  226  8e-58  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.118706  n/a   
 
 
-
 
NC_010658  SbBS512_E3421  hydrogenase 2 large subunit  28.09 
 
 
567 aa  226  8e-58  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3174  hydrogenase 2 large subunit  28.09 
 
 
567 aa  226  8e-58  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>