Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DhcVS_120 |
Symbol | hupL |
ID | 8657074 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides sp. VS |
Kingdom | Bacteria |
Replicon accession | NC_013552 |
Strand | - |
Start bp | 118702 |
End bp | 120282 |
Gene Length | 1581 bp |
Protein Length | 526 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | |
Product | Ni/Fe hydrogenase, large subunit |
Protein accession | YP_003329621 |
Protein GI | 270307563 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGAAGA TAGTAATTGA TCCCATAACG AGGATTGAAG GTCATCTAAA AATCGAAGCC ACCGTAGACG GCGGTGAGGT TAAAGATGCC AAATGTGTCG GCACTCTGTT CCGCGGCTTT GAAATATTTA TGAAAGACCG TGACCCGCGT GATGCTGTTC ATATTACCCA GCGTATCTGC GGCGTCTGCC CCACCTCCCA CGGCACTACC GCCGCTTTAA ACTTGGACTC CGCCTTTGGC GTAGCTGACA AAATACCGAA TAACGGGCGG ATACTCCGCA ACCTTATTCA GGGTGCTAAC TATATTGCTT CCCATATAGT TCATTTTTAC CATCTGGCCG CTCTGGATTT CGTAGACGTA ACCGAAGTAG CCGATTATGA TGGTACTGAT CCTGAACTTT TAAAAGTAAA GGATTTTATT GCCCGGGCTC TGGCTGCCGG TGATATGTCC ATGCTGGCTC CCTTCTACCC CAGATACGAA GGTGATTACC GCCTTCCCAA GAAGGTTGCC CAGGCCGCAG TTGCCCATTA TGTTGAAGCT TTGAACATGC GCCGTCTGGC TCACGAACTT TCCGCTATTT ACAGCGGACG CATGCCGCAC AGTGTAGCAG TGGTAGCCGG CGGTGTTACT TCACACCCCA GCATAGACAG CATCTCAAAC TTTATGAGCA AGCTGAATAC CCTGCGTCAC TTTATTGACA ATGTATATCT GCCTGACGTT ATTGCAGTAG CCGAAACCTA TCCTGATTAC TTCGGTATCG GTGTGGGTTG CGGCAACCTG CTCAGCTATG GTGTGTTTGA TCTTGAAGCA AACGGCACTA ATCTGGCTAC CCGCCAGAGA CTTTTCACTC AGGGCGTGGT CTCCGCTTCT GACCTGAAAC TCCGCACCTT TGATCCCAAC AAGATTACCG AATCAATCAA ATACAGCTGG TTCAGCGGTG AAACCAATGA ATACCCCCTG AACGAAGTAA CCGAACCTGA ATTTACCAAG CCGGACGGCT ATTCCTGGCT GAAAGCCCCC CGATACGAGA ATACCCCCTA CGAAGTAGGC CCTCTGGCTC GTATGGTGGT TAACTACGTA GCCGGTGACC CCGTGGTTCA GAAGATGGTA AACAATACCT TGGCTCATTT CGGTGCCGGC CCTGCCGCCC TTTTCAGCAC ACTCGGCAGA CATGCCGCCC GTGCCCTTGA ATGCAAGATC GTAGCTGATG AAATGGTCAA GTGGGCTATG GAACTCAAGA TTGGCGAACC TGTGTGCGCT GATTACGAAA TACCCGAAAG TGCCGAAGGC ATGGGTCTCT GGGAAGCTCC CCGCGGTGCT CTTGGCCACT GGATAAAGAT TGAAAACCAC AAGATAAGCA ACTATCAGTG CGTAGTGCCC TCCACTTGGA ACTGTTCACC CAAAGATAAT CAGGGTGTTT ACGGTCCTGT TGAGCAGGCT CTTGTCGGTA CTAAGGTACG TGATAACGAT AATCCGTTTG AGCTGGTTCG CATTGTCCGC TCGTTTGACC CGTGTCTGGC TTGTGCCGTT CATCTGGTCT CACCCACCGG CAATGAAATC AGCCGCTTCC GCGTTTACTA A
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Protein sequence | MQKIVIDPIT RIEGHLKIEA TVDGGEVKDA KCVGTLFRGF EIFMKDRDPR DAVHITQRIC GVCPTSHGTT AALNLDSAFG VADKIPNNGR ILRNLIQGAN YIASHIVHFY HLAALDFVDV TEVADYDGTD PELLKVKDFI ARALAAGDMS MLAPFYPRYE GDYRLPKKVA QAAVAHYVEA LNMRRLAHEL SAIYSGRMPH SVAVVAGGVT SHPSIDSISN FMSKLNTLRH FIDNVYLPDV IAVAETYPDY FGIGVGCGNL LSYGVFDLEA NGTNLATRQR LFTQGVVSAS DLKLRTFDPN KITESIKYSW FSGETNEYPL NEVTEPEFTK PDGYSWLKAP RYENTPYEVG PLARMVVNYV AGDPVVQKMV NNTLAHFGAG PAALFSTLGR HAARALECKI VADEMVKWAM ELKIGEPVCA DYEIPESAEG MGLWEAPRGA LGHWIKIENH KISNYQCVVP STWNCSPKDN QGVYGPVEQA LVGTKVRDND NPFELVRIVR SFDPCLACAV HLVSPTGNEI SRFRVY
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