More than 300 homologs were found in PanDaTox collection
for query gene DhcVS_120 on replicon NC_013552
Organism: Dehalococcoides sp. VS



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002936  DET0110  [Ni/Fe] hydrogenase, group 1, large subunit, putative  94.87 
 
 
526 aa  1050    Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0258  nickel-dependent hydrogenase, large subunit  96.58 
 
 
526 aa  1060    Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_120  Ni/Fe hydrogenase, large subunit  100 
 
 
526 aa  1095    Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1042  nickel-dependent hydrogenase, large subunit  51.13 
 
 
485 aa  506  9.999999999999999e-143  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.90765  n/a   
 
 
-
 
NC_013385  Adeg_1231  nickel-dependent hydrogenase large subunit  51.38 
 
 
458 aa  508  9.999999999999999e-143  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1787  nickel-dependent hydrogenase large subunit  50.1 
 
 
481 aa  495  1e-139  Ammonifex degensii KC4  Bacteria  normal  0.993845  n/a   
 
 
-
 
NC_011830  Dhaf_2742  Hydrogen:quinone oxidoreductase  45.83 
 
 
518 aa  479  1e-134  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000126046  n/a   
 
 
-
 
NC_013173  Dbac_0766  nickel-dependent hydrogenase large subunit  41.71 
 
 
569 aa  434  1e-120  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0873  nickel-dependent hydrogenase, large subunit  41.75 
 
 
569 aa  432  1e-119  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0122  nickel-dependent hydrogenase, large subunit  41.86 
 
 
564 aa  426  1e-118  Geobacter sulfurreducens PCA  Bacteria  normal  0.254382  n/a   
 
 
-
 
NC_007519  Dde_2138  periplasmic (NiFe) hydrogenase, large subunit, isozyme 1  42.01 
 
 
568 aa  424  1e-117  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3147  nickel-dependent hydrogenase large subunit  41.04 
 
 
570 aa  423  1e-117  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2320  nickel-dependent hydrogenase, large subunit  40.38 
 
 
570 aa  419  1e-116  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3331  nickel-dependent hydrogenase, large subunit  40.42 
 
 
566 aa  421  1e-116  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_1245  nickel-dependent hydrogenase, large subunit  41.49 
 
 
566 aa  421  1e-116  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.11159 
 
 
-
 
NC_011769  DvMF_0270  nickel-dependent hydrogenase large subunit  41.12 
 
 
567 aa  416  9.999999999999999e-116  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.11146 
 
 
-
 
NC_013223  Dret_0266  nickel-dependent hydrogenase large subunit  41.74 
 
 
566 aa  414  1e-114  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.322067  normal 
 
 
-
 
NC_009483  Gura_0544  nickel-dependent hydrogenase, large subunit  41.34 
 
 
566 aa  415  1e-114  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0273  nickel-dependent hydrogenase large subunit  43.31 
 
 
488 aa  410  1e-113  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.328721 
 
 
-
 
NC_008751  Dvul_1248  nickel-dependent hydrogenase, large subunit  43.5 
 
 
488 aa  409  1e-113  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.210122 
 
 
-
 
NC_007519  Dde_2135  periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing  44.53 
 
 
488 aa  408  1.0000000000000001e-112  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2952  nickel-dependent hydrogenase, large subunit  41.02 
 
 
546 aa  407  1.0000000000000001e-112  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.437472 
 
 
-
 
NC_010814  Glov_2055  nickel-dependent hydrogenase large subunit  40.93 
 
 
566 aa  406  1.0000000000000001e-112  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3270  nickel-dependent hydrogenase large subunit  40.82 
 
 
517 aa  400  9.999999999999999e-111  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1969  nickel-dependent hydrogenase large subunit  40.45 
 
 
514 aa  393  1e-108  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.668451  n/a   
 
 
-
 
NC_011059  Paes_0854  nickel-dependent hydrogenase large subunit  40 
 
 
572 aa  392  1e-107  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.255543 
 
 
-
 
NC_011883  Ddes_1038  nickel-dependent hydrogenase large subunit  38.8 
 
 
558 aa  386  1e-106  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.368471  n/a   
 
 
-
 
NC_011060  Ppha_1861  nickel-dependent hydrogenase large subunit  39.02 
 
 
572 aa  384  1e-105  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2884  nickel-dependent hydrogenase large subunit  37.86 
 
 
585 aa  380  1e-104  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.308731  normal 
 
 
-
 
NC_011761  AFE_3286  [Ni/Fe] hydrogenase, large subunit  37.86 
 
 
585 aa  380  1e-104  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1946  nickel-dependent hydrogenase, large subunit  37.39 
 
 
560 aa  375  1e-103  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0785  nickel-dependent hydrogenase, large subunit  37.04 
 
 
560 aa  374  1e-102  Geobacter sulfurreducens PCA  Bacteria  normal  0.433799  n/a   
 
 
-
 
NC_007512  Plut_1447  hydrogenase large chain  39.41 
 
 
572 aa  374  1e-102  Chlorobium luteolum DSM 273  Bacteria  normal  0.333249  normal 
 
 
-
 
NC_010803  Clim_0856  nickel-dependent hydrogenase large subunit  38.06 
 
 
572 aa  372  1e-102  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1071  nickel-dependent hydrogenase large subunit  38.64 
 
 
470 aa  372  1e-102  Clostridium cellulolyticum H10  Bacteria  normal  0.018808  n/a   
 
 
-
 
NC_007520  Tcr_2037  nickel-dependent hydrogenase, large subunit  37.88 
 
 
568 aa  369  1e-101  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_1435  nickel-dependent hydrogenase, large subunit  37.15 
 
 
577 aa  370  1e-101  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.611833  n/a   
 
 
-
 
NC_008639  Cpha266_0973  nickel-dependent hydrogenase, large subunit  38.38 
 
 
572 aa  370  1e-101  Chlorobium phaeobacteroides DSM 266  Bacteria  decreased coverage  0.000120136  n/a   
 
 
-
 
NC_010831  Cphamn1_1592  nickel-dependent hydrogenase large subunit  38.33 
 
 
572 aa  370  1e-101  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.663154  normal 
 
 
-
 
NC_009475  BBta_p0179  uptake hydrogenase large subunit  38.37 
 
 
570 aa  372  1e-101  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_002977  MCA0165  nickel-iron hydrogenase, large subunit  37.78 
 
 
597 aa  367  1e-100  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0497936  n/a   
 
 
-
 
NC_011901  Tgr7_1266  Ni-Fe hydrogenase large chain  37.26 
 
 
583 aa  367  1e-100  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_1276  nickel-dependent hydrogenase large subunit  38.01 
 
 
554 aa  363  3e-99  Eggerthella lenta DSM 2243  Bacteria  normal  0.438048  normal 
 
 
-
 
NC_007958  RPD_1163  nickel-dependent hydrogenase, large subunit  38.53 
 
 
597 aa  363  5.0000000000000005e-99  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.28682  normal 
 
 
-
 
NC_013512  Sdel_1105  nickel-dependent hydrogenase large subunit  35.84 
 
 
584 aa  362  7.0000000000000005e-99  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1997  uptake hydrogenase large subunit precursor  36.8 
 
 
596 aa  362  8e-99  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_3520  nickel-dependent hydrogenase large subunit  38.34 
 
 
567 aa  362  1e-98  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_12910  Ni,Fe-hydrogenase I large subunit  37.85 
 
 
545 aa  362  1e-98  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.343906  normal  0.388227 
 
 
-
 
NC_008700  Sama_1678  hydrogenase large chain  38 
 
 
567 aa  361  2e-98  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3404  nickel-dependent hydrogenase large subunit  37.31 
 
 
573 aa  361  2e-98  Frankia sp. EAN1pec  Bacteria  normal  0.37903  normal 
 
 
-
 
NC_010814  Glov_0147  nickel-dependent hydrogenase large subunit  36.54 
 
 
559 aa  360  3e-98  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1940  hydrogen:quinone oxidoreductase  38.13 
 
 
475 aa  360  5e-98  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2028  nickel-dependent hydrogenase, large subunit  35.9 
 
 
595 aa  358  9.999999999999999e-98  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_3368  nickel-dependent hydrogenase large subunit  36.22 
 
 
570 aa  357  1.9999999999999998e-97  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1155  nickel-dependent hydrogenase large subunit  35.45 
 
 
597 aa  358  1.9999999999999998e-97  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.295857  n/a   
 
 
-
 
NC_009714  CHAB381_0862  quinone-reactive Ni/Fe-hydrogenase large chain  36.51 
 
 
573 aa  357  2.9999999999999997e-97  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3771  nickel-dependent hydrogenase, large subunit  37.26 
 
 
597 aa  357  2.9999999999999997e-97  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.292608  normal  0.910106 
 
 
-
 
NC_009901  Spea_2032  nickel-dependent hydrogenase large subunit  37.7 
 
 
567 aa  356  3.9999999999999996e-97  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0709763  n/a   
 
 
-
 
NC_012560  Avin_50580  Membrane bound nickel-dependent hydrogenase, large subunit, HoxG  35.86 
 
 
602 aa  356  5.999999999999999e-97  Azotobacter vinelandii DJ  Bacteria  normal  0.980558  n/a   
 
 
-
 
NC_007404  Tbd_1375  Ni-Fe hydrogenase large chain  37.33 
 
 
596 aa  354  2e-96  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0200361  normal 
 
 
-
 
NC_008322  Shewmr7_2156  nickel-dependent hydrogenase, large subunit  38.07 
 
 
567 aa  354  2e-96  Shewanella sp. MR-7  Bacteria  normal  0.352792  normal  0.370314 
 
 
-
 
NC_008577  Shewana3_1879  nickel-dependent hydrogenase, large subunit  38.07 
 
 
567 aa  354  2e-96  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_08540  Ni,Fe-hydrogenase I large subunit  37.59 
 
 
548 aa  355  2e-96  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal  0.481337 
 
 
-
 
NC_011146  Gbem_1368  nickel-dependent hydrogenase large subunit  37.7 
 
 
571 aa  354  2e-96  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1821  nickel-dependent hydrogenase, large subunit  38.07 
 
 
567 aa  354  2.9999999999999997e-96  Shewanella sp. MR-4  Bacteria  normal  0.545248  normal 
 
 
-
 
NC_011149  SeAg_B1633  [Ni/Fe] hydrogenase, large subunit  35.92 
 
 
600 aa  353  4e-96  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A1798  [Ni/Fe] hydrogenase, large subunit  35.92 
 
 
600 aa  353  5.9999999999999994e-96  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.570579  normal 
 
 
-
 
NC_011094  SeSA_A1642  [Ni/Fe] hydrogenase, large subunit  35.92 
 
 
600 aa  353  5.9999999999999994e-96  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.251142  normal 
 
 
-
 
NC_011138  MADE_00347  Ni-Fe hydrogenase large chain  34.94 
 
 
625 aa  353  5.9999999999999994e-96  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A1650  [Ni/Fe] hydrogenase large subunit  35.92 
 
 
600 aa  353  5.9999999999999994e-96  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C1709  [Ni/Fe] hydrogenase large subunit  35.92 
 
 
600 aa  353  5.9999999999999994e-96  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_4240  nickel-dependent hydrogenase, large subunit  36.44 
 
 
563 aa  353  5.9999999999999994e-96  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1764  nickel-dependent hydrogenase, large subunit  37.83 
 
 
568 aa  352  8e-96  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_012039  Cla_0713  Ni/Fe-hydrogenase, large subunit  38.02 
 
 
571 aa  352  8.999999999999999e-96  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3136  nickel-dependent hydrogenase large subunit  35.34 
 
 
559 aa  352  8.999999999999999e-96  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2098  quinone-reactive Ni/Fe hydrogenase, large subunit  37.83 
 
 
567 aa  351  2e-95  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007643  Rru_A1162  nickel-dependent hydrogenase, large subunit  36.51 
 
 
596 aa  351  2e-95  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.122791  n/a   
 
 
-
 
NC_009438  Sputcn32_2089  nickel-dependent hydrogenase, large subunit  37.48 
 
 
567 aa  350  3e-95  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2915  nickel-dependent hydrogenase large subunit  37.88 
 
 
571 aa  350  3e-95  Geobacter sp. M21  Bacteria  n/a    normal  0.289083 
 
 
-
 
NC_007298  Daro_3988  nickel-dependent hydrogenase, large subunit  36.29 
 
 
598 aa  349  7e-95  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_1126  Cytochrome-c3 hydrogenase  34.88 
 
 
559 aa  349  7e-95  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008599  CFF8240_0939  quinone-reactive Ni/Fe-hydrogenase large chain  36.33 
 
 
573 aa  348  1e-94  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.0992433  n/a   
 
 
-
 
NC_009802  CCC13826_0100  aminodeoxychorismate lyase  37.46 
 
 
572 aa  348  1e-94  Campylobacter concisus 13826  Bacteria  normal  0.0667384  n/a   
 
 
-
 
NC_010627  Bphy_7264  nickel-dependent hydrogenase large subunit  36.71 
 
 
596 aa  347  2e-94  Burkholderia phymatum STM815  Bacteria  normal  normal  0.340015 
 
 
-
 
NC_009052  Sbal_1888  nickel-dependent hydrogenase large subunit  38.88 
 
 
567 aa  346  5e-94  Shewanella baltica OS155  Bacteria  normal  0.261784  n/a   
 
 
-
 
NC_008787  CJJ81176_1282  quinone-reactive Ni/Fe-hydrogenase, large subunit  36.85 
 
 
571 aa  346  7e-94  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00216082  n/a   
 
 
-
 
NC_011663  Sbal223_2405  nickel-dependent hydrogenase large subunit  38.88 
 
 
567 aa  346  8e-94  Shewanella baltica OS223  Bacteria  normal  0.286384  hitchhiker  0.000502851 
 
 
-
 
NC_009997  Sbal195_1921  nickel-dependent hydrogenase large subunit  38.88 
 
 
567 aa  346  8e-94  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1914  nickel-dependent hydrogenase large subunit  38.88 
 
 
567 aa  345  8.999999999999999e-94  Shewanella baltica OS185  Bacteria  normal  0.392356  n/a   
 
 
-
 
NC_009831  Ssed_1907  nickel-dependent hydrogenase, large subunit  36.95 
 
 
567 aa  345  8.999999999999999e-94  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.022032 
 
 
-
 
NC_009441  Fjoh_3907  nickel-dependent hydrogenase, large subunit  36.05 
 
 
578 aa  345  8.999999999999999e-94  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2147  nickel-dependent hydrogenase, large subunit  36.35 
 
 
596 aa  345  1e-93  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0605986  normal  0.266797 
 
 
-
 
NC_007493  RSP_0496  hydrogenase protein large subunit  36.35 
 
 
596 aa  345  1e-93  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE1402  quinone-reactive Ni/Fe-hydrogenase, large subunit  36.85 
 
 
571 aa  344  2e-93  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2104  nickel-dependent hydrogenase, large subunit  36.54 
 
 
567 aa  344  2e-93  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_4091  nickel-dependent hydrogenase, large subunit  38.07 
 
 
568 aa  342  7e-93  Rhodoferax ferrireducens T118  Bacteria  normal  0.0995107  n/a   
 
 
-
 
NC_008687  Pden_3098  nickel-dependent hydrogenase, large subunit  35.42 
 
 
597 aa  342  1e-92  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009707  JJD26997_0459  quinone-reactive Ni/Fe-hydrogenase, large subunit  36.33 
 
 
571 aa  341  2e-92  Campylobacter jejuni subsp. doylei 269.97  Bacteria  unclonable  0.000000000643457  n/a   
 
 
-
 
NC_009484  Acry_0337  nickel-dependent hydrogenase, large subunit  35.32 
 
 
598 aa  340  5e-92  Acidiphilium cryptum JF-5  Bacteria  normal  0.0168031  n/a   
 
 
-
 
NC_009429  Rsph17025_3375  hypothetical protein  35.04 
 
 
596 aa  339  8e-92  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.281049  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>