More than 300 homologs were found in PanDaTox collection
for query gene Dhaf_2742 on replicon NC_011830
Organism: Desulfitobacterium hafniense DCB-2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011830  Dhaf_3270  nickel-dependent hydrogenase large subunit  59.5 
 
 
517 aa  645    Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_2742  Hydrogen:quinone oxidoreductase  100 
 
 
518 aa  1070    Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000126046  n/a   
 
 
-
 
NC_002936  DET0110  [Ni/Fe] hydrogenase, group 1, large subunit, putative  47.58 
 
 
526 aa  492  9.999999999999999e-139  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0258  nickel-dependent hydrogenase, large subunit  46.57 
 
 
526 aa  479  1e-134  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_120  Ni/Fe hydrogenase, large subunit  45.83 
 
 
526 aa  479  1e-134  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3331  nickel-dependent hydrogenase, large subunit  39.79 
 
 
566 aa  419  1e-116  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0122  nickel-dependent hydrogenase, large subunit  40 
 
 
564 aa  417  9.999999999999999e-116  Geobacter sulfurreducens PCA  Bacteria  normal  0.254382  n/a   
 
 
-
 
NC_009483  Gura_0873  nickel-dependent hydrogenase, large subunit  39.69 
 
 
569 aa  417  9.999999999999999e-116  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2952  nickel-dependent hydrogenase, large subunit  41.17 
 
 
546 aa  417  9.999999999999999e-116  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.437472 
 
 
-
 
NC_013385  Adeg_1231  nickel-dependent hydrogenase large subunit  44.71 
 
 
458 aa  409  1e-113  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0266  nickel-dependent hydrogenase large subunit  39.53 
 
 
566 aa  411  1e-113  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.322067  normal 
 
 
-
 
NC_009483  Gura_0544  nickel-dependent hydrogenase, large subunit  39.37 
 
 
566 aa  405  1.0000000000000001e-112  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1042  nickel-dependent hydrogenase, large subunit  43.03 
 
 
485 aa  407  1.0000000000000001e-112  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.90765  n/a   
 
 
-
 
NC_013385  Adeg_1787  nickel-dependent hydrogenase large subunit  43.97 
 
 
481 aa  404  1e-111  Ammonifex degensii KC4  Bacteria  normal  0.993845  n/a   
 
 
-
 
NC_010814  Glov_2055  nickel-dependent hydrogenase large subunit  38.77 
 
 
566 aa  401  9.999999999999999e-111  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1245  nickel-dependent hydrogenase, large subunit  37.86 
 
 
566 aa  397  1e-109  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.11159 
 
 
-
 
NC_011883  Ddes_1038  nickel-dependent hydrogenase large subunit  37.61 
 
 
558 aa  395  1e-109  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.368471  n/a   
 
 
-
 
NC_011769  DvMF_0270  nickel-dependent hydrogenase large subunit  37.84 
 
 
567 aa  392  1e-108  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.11146 
 
 
-
 
NC_007519  Dde_2138  periplasmic (NiFe) hydrogenase, large subunit, isozyme 1  37.92 
 
 
568 aa  393  1e-108  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0766  nickel-dependent hydrogenase large subunit  38.63 
 
 
569 aa  386  1e-106  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2320  nickel-dependent hydrogenase, large subunit  36.76 
 
 
570 aa  385  1e-105  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3147  nickel-dependent hydrogenase large subunit  37 
 
 
570 aa  381  1e-104  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0273  nickel-dependent hydrogenase large subunit  40.47 
 
 
488 aa  369  1e-101  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.328721 
 
 
-
 
NC_011206  Lferr_2884  nickel-dependent hydrogenase large subunit  38.14 
 
 
585 aa  368  1e-100  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.308731  normal 
 
 
-
 
NC_013173  Dbac_1969  nickel-dependent hydrogenase large subunit  40.87 
 
 
514 aa  365  1e-100  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.668451  n/a   
 
 
-
 
NC_011761  AFE_3286  [Ni/Fe] hydrogenase, large subunit  38.14 
 
 
585 aa  368  1e-100  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1155  nickel-dependent hydrogenase large subunit  36.71 
 
 
597 aa  364  3e-99  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.295857  n/a   
 
 
-
 
NC_013512  Sdel_1105  nickel-dependent hydrogenase large subunit  37.91 
 
 
584 aa  362  8e-99  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1248  nickel-dependent hydrogenase, large subunit  41.45 
 
 
488 aa  360  3e-98  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.210122 
 
 
-
 
NC_009901  Spea_2032  nickel-dependent hydrogenase large subunit  37.3 
 
 
567 aa  359  5e-98  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0709763  n/a   
 
 
-
 
NC_007519  Dde_2135  periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing  41.94 
 
 
488 aa  359  6e-98  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1997  uptake hydrogenase large subunit precursor  36.32 
 
 
596 aa  359  7e-98  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3771  nickel-dependent hydrogenase, large subunit  37.35 
 
 
597 aa  359  8e-98  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.292608  normal  0.910106 
 
 
-
 
NC_009714  CHAB381_0862  quinone-reactive Ni/Fe-hydrogenase large chain  36.28 
 
 
573 aa  357  1.9999999999999998e-97  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2104  nickel-dependent hydrogenase, large subunit  36.87 
 
 
567 aa  357  2.9999999999999997e-97  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0854  nickel-dependent hydrogenase large subunit  35.43 
 
 
572 aa  355  1e-96  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.255543 
 
 
-
 
NC_011060  Ppha_1861  nickel-dependent hydrogenase large subunit  36.13 
 
 
572 aa  354  2.9999999999999997e-96  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3404  nickel-dependent hydrogenase large subunit  36.83 
 
 
573 aa  353  5e-96  Frankia sp. EAN1pec  Bacteria  normal  0.37903  normal 
 
 
-
 
NC_011901  Tgr7_1266  Ni-Fe hydrogenase large chain  36.84 
 
 
583 aa  353  5e-96  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2098  quinone-reactive Ni/Fe hydrogenase, large subunit  35.55 
 
 
567 aa  352  1e-95  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007520  Tcr_2037  nickel-dependent hydrogenase, large subunit  35.98 
 
 
568 aa  352  1e-95  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1678  hydrogenase large chain  36.14 
 
 
567 aa  352  1e-95  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1821  nickel-dependent hydrogenase, large subunit  35.73 
 
 
567 aa  351  2e-95  Shewanella sp. MR-4  Bacteria  normal  0.545248  normal 
 
 
-
 
NC_008322  Shewmr7_2156  nickel-dependent hydrogenase, large subunit  35.73 
 
 
567 aa  351  2e-95  Shewanella sp. MR-7  Bacteria  normal  0.352792  normal  0.370314 
 
 
-
 
NC_008577  Shewana3_1879  nickel-dependent hydrogenase, large subunit  35.73 
 
 
567 aa  351  2e-95  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008639  Cpha266_0973  nickel-dependent hydrogenase, large subunit  36.33 
 
 
572 aa  349  7e-95  Chlorobium phaeobacteroides DSM 266  Bacteria  decreased coverage  0.000120136  n/a   
 
 
-
 
NC_008781  Pnap_1974  nickel-dependent hydrogenase, large subunit  34.93 
 
 
618 aa  349  9e-95  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.688051  normal 
 
 
-
 
NC_009831  Ssed_1907  nickel-dependent hydrogenase, large subunit  35.79 
 
 
567 aa  347  2e-94  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.022032 
 
 
-
 
NC_009438  Sputcn32_2089  nickel-dependent hydrogenase, large subunit  35.73 
 
 
567 aa  348  2e-94  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_1592  nickel-dependent hydrogenase large subunit  35.8 
 
 
572 aa  348  2e-94  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.663154  normal 
 
 
-
 
NC_007575  Suden_1435  nickel-dependent hydrogenase, large subunit  35.94 
 
 
577 aa  347  3e-94  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.611833  n/a   
 
 
-
 
NC_007298  Daro_3988  nickel-dependent hydrogenase, large subunit  35.33 
 
 
598 aa  345  1e-93  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_0856  nickel-dependent hydrogenase large subunit  35.08 
 
 
572 aa  345  1e-93  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1163  nickel-dependent hydrogenase, large subunit  35.63 
 
 
597 aa  345  1e-93  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.28682  normal 
 
 
-
 
NC_009092  Shew_1764  nickel-dependent hydrogenase, large subunit  35.09 
 
 
568 aa  345  1e-93  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010627  Bphy_7264  nickel-dependent hydrogenase large subunit  35.3 
 
 
596 aa  344  2e-93  Burkholderia phymatum STM815  Bacteria  normal  normal  0.340015 
 
 
-
 
NC_011149  SeAg_B1633  [Ni/Fe] hydrogenase, large subunit  35.04 
 
 
600 aa  343  2.9999999999999997e-93  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A1798  [Ni/Fe] hydrogenase, large subunit  35.04 
 
 
600 aa  343  2.9999999999999997e-93  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.570579  normal 
 
 
-
 
NC_011094  SeSA_A1642  [Ni/Fe] hydrogenase, large subunit  35.04 
 
 
600 aa  343  2.9999999999999997e-93  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.251142  normal 
 
 
-
 
NC_011080  SNSL254_A1650  [Ni/Fe] hydrogenase large subunit  35.04 
 
 
600 aa  343  2.9999999999999997e-93  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_12910  Ni,Fe-hydrogenase I large subunit  36.79 
 
 
545 aa  343  2.9999999999999997e-93  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.343906  normal  0.388227 
 
 
-
 
NC_011083  SeHA_C1709  [Ni/Fe] hydrogenase large subunit  35.04 
 
 
600 aa  343  2.9999999999999997e-93  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_1126  Cytochrome-c3 hydrogenase  35.22 
 
 
559 aa  343  4e-93  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009484  Acry_0337  nickel-dependent hydrogenase, large subunit  34.36 
 
 
598 aa  343  4e-93  Acidiphilium cryptum JF-5  Bacteria  normal  0.0168031  n/a   
 
 
-
 
NC_007512  Plut_1447  hydrogenase large chain  35.58 
 
 
572 aa  343  5.999999999999999e-93  Chlorobium luteolum DSM 273  Bacteria  normal  0.333249  normal 
 
 
-
 
NC_009483  Gura_1946  nickel-dependent hydrogenase, large subunit  34.82 
 
 
560 aa  343  5.999999999999999e-93  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1375  Ni-Fe hydrogenase large chain  36.06 
 
 
596 aa  341  1e-92  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0200361  normal 
 
 
-
 
NC_011146  Gbem_3136  nickel-dependent hydrogenase large subunit  35.04 
 
 
559 aa  342  1e-92  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3756  periplasmic (NiFe) hydrogenase, large subunit, isozyme 2  35.45 
 
 
554 aa  342  1e-92  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_0939  quinone-reactive Ni/Fe-hydrogenase large chain  35.53 
 
 
573 aa  342  1e-92  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.0992433  n/a   
 
 
-
 
NC_002939  GSU0785  nickel-dependent hydrogenase, large subunit  34.29 
 
 
560 aa  341  2e-92  Geobacter sulfurreducens PCA  Bacteria  normal  0.433799  n/a   
 
 
-
 
NC_008825  Mpe_A2826  nickel-iron hydrogenase, large subunit  35.15 
 
 
618 aa  341  2e-92  Methylibium petroleiphilum PM1  Bacteria  normal  0.652434  normal 
 
 
-
 
NC_008340  Mlg_2028  nickel-dependent hydrogenase, large subunit  34.42 
 
 
595 aa  339  8e-92  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3907  nickel-dependent hydrogenase, large subunit  34.91 
 
 
578 aa  339  9e-92  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA0165  nickel-iron hydrogenase, large subunit  35.11 
 
 
597 aa  338  9.999999999999999e-92  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0497936  n/a   
 
 
-
 
CP001509  ECD_02870  hydrogenase 2, large subunit  35.33 
 
 
567 aa  338  1.9999999999999998e-91  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0702  nickel-dependent hydrogenase large subunit  35.33 
 
 
567 aa  338  1.9999999999999998e-91  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3463  hydrogenase 2 large subunit  35.33 
 
 
567 aa  338  1.9999999999999998e-91  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0699  hydrogenase 2 large subunit  35.33 
 
 
567 aa  337  1.9999999999999998e-91  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E3421  hydrogenase 2 large subunit  35.33 
 
 
567 aa  338  1.9999999999999998e-91  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_3280  hydrogenase 2 large subunit  35.33 
 
 
567 aa  338  1.9999999999999998e-91  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_02819  hypothetical protein  35.33 
 
 
567 aa  338  1.9999999999999998e-91  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1162  nickel-dependent hydrogenase, large subunit  34.84 
 
 
596 aa  337  1.9999999999999998e-91  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.122791  n/a   
 
 
-
 
NC_011353  ECH74115_4306  hydrogenase 2 large subunit  35.33 
 
 
567 aa  338  1.9999999999999998e-91  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.228665  normal 
 
 
-
 
NC_009800  EcHS_A3174  hydrogenase 2 large subunit  35.33 
 
 
567 aa  338  1.9999999999999998e-91  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3368  nickel-dependent hydrogenase large subunit  34.55 
 
 
570 aa  337  2.9999999999999997e-91  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_1209  hydrogenase 1 large subunit  34.31 
 
 
597 aa  337  3.9999999999999995e-91  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_50580  Membrane bound nickel-dependent hydrogenase, large subunit, HoxG  35.62 
 
 
602 aa  336  5e-91  Azotobacter vinelandii DJ  Bacteria  normal  0.980558  n/a   
 
 
-
 
NC_011663  Sbal223_2405  nickel-dependent hydrogenase large subunit  35.9 
 
 
567 aa  336  5.999999999999999e-91  Shewanella baltica OS223  Bacteria  normal  0.286384  hitchhiker  0.000502851 
 
 
-
 
NC_009997  Sbal195_1921  nickel-dependent hydrogenase large subunit  35.9 
 
 
567 aa  336  5.999999999999999e-91  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_1297  nickel-dependent hydrogenase, large subunit  34.44 
 
 
619 aa  336  7e-91  Cupriavidus metallidurans CH34  Bacteria  normal  0.0139093  normal 
 
 
-
 
CP001509  ECD_00976  hydrogenase 1, large subunit  34.14 
 
 
597 aa  335  1e-90  Escherichia coli BL21(DE3)  Bacteria  normal  0.170036  n/a   
 
 
-
 
CP001637  EcDH1_2671  nickel-dependent hydrogenase large subunit  34.14 
 
 
597 aa  335  1e-90  Escherichia coli DH1  Bacteria  hitchhiker  0.00020942  n/a   
 
 
-
 
NC_009800  EcHS_A1081  hydrogenase 1 large subunit  34.14 
 
 
597 aa  335  1e-90  Escherichia coli HS  Bacteria  normal  0.674487  n/a   
 
 
-
 
NC_010498  EcSMS35_2144  hydrogenase 1 large subunit  34.14 
 
 
597 aa  335  1e-90  Escherichia coli SMS-3-5  Bacteria  normal  0.375749  normal  0.757738 
 
 
-
 
NC_012892  B21_00983  hypothetical protein  34.14 
 
 
597 aa  335  1e-90  Escherichia coli BL21  Bacteria  normal  0.201249  n/a   
 
 
-
 
NC_008687  Pden_3098  nickel-dependent hydrogenase, large subunit  34.99 
 
 
597 aa  335  1e-90  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_1088  hydrogenase 1 large subunit  34.14 
 
 
597 aa  335  1e-90  Escherichia coli E24377A  Bacteria  hitchhiker  0.000594285  n/a   
 
 
-
 
NC_009052  Sbal_1888  nickel-dependent hydrogenase large subunit  35.73 
 
 
567 aa  335  1e-90  Shewanella baltica OS155  Bacteria  normal  0.261784  n/a   
 
 
-
 
NC_010658  SbBS512_E2342  hydrogenase 1 large subunit  34.14 
 
 
597 aa  335  2e-90  Shigella boydii CDC 3083-94  Bacteria  normal  0.514327  n/a   
 
 
-
 
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