| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_3756 |
|---|
| Symbol | |
|---|
| ID | 3758743 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | + |
|---|
| Start bp | 3707007 |
|---|
| End bp | 3708671 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637784678 |
|---|
| Product | periplasmic (NiFe) hydrogenase, large subunit, isozyme 2 |
|---|
| Protein accession | YP_390244 |
|---|
| Protein GI | 78358795 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAGA AAAAAATGAA CCACACCGGC AAAAGGCTGA TCGTCGATCC GGTGACGCGG
ATCGAAGGGC ACCTCAAGAT CGAGGTGGAA CTGGAAAACA ACAAAGTCAA AGATGCATGG
GTAAGCACAC AGCTTTTCAG AGGCATTGAG ATGATTCTGA AAGGCAGACC GCCGGAAGAT
GCCCCGCTGT TTACCCAGCG TGCTTGCGGC GTATGCACAA ACACCCATGC GCTGACCAGC
ATCCGCGCCA TCGAAGACGC ACTTGAGATC AAAGTCCCTC CGCTGGCACA GCTCATGCGC
CACCTTATTC TCTCCGCGCT TATCGTGCAT GACCATCTGG TGCACTTTTA CCACCTGCAC
GGGCTGGACT GGATTGATGT TGCCGCAGCC ACCACGGCCG ATCCGGCCAA GGCCGGTAAA
ATTGTGGGCA GCACCAGCAA CAGAAGCGAC GACCCTTCAG AGCTTTTCAT CATTCAGAAG
CGGCTGAAGG AGTTTGTGAA ATCGGGACAG CTGGGATTTC TGGAAAAGGC ATATTTTCTG
GGCGGCAACG ATGCGTACAA GCTGAGTCCG GAAGAAAACC TGATAATGTC GGCCCACTAC
TTTGAAGGGC TGCGCATTCA GCTGGAACTG GGCAGAGCCA TGGCGCTTTT TGCCGGTAAA
AACCCGCATG CGCAAAGTAT GGTTGTGGGC GGCATGACCT GCTACGACAG CCTGCGTCCG
GAAGTTATCG GACACTTCCG CAAGATCTGG GAACACTGCA AGGAGTTTGT TGAAAACGCC
ATGATGCCCG ACATCCTGCT GATGACCAGA CGCTACCCTG AAGCGCTGGC CTACGGCAGA
ACATCCAACT TCTTTGCCTT TGCAGATTTT CATGATCCGG TAACAGGCAA AGACCCGTAC
TTCACTTCGG GCGTGCTGTG GGGCAACGAT CTTACAAAGC ACGAAGAGCT GGACCCCGGC
CATATCAACG AACATGTGGC GCGCAGCTGG TACGAAGGCG ATACCCCGCG CACGCCCTAT
GAAGGCGCTA CAGAGCCGCA CTACACATCA TATGAGGACA AGGAGAAGTA TTCCTGGTCC
AAGGCTCCGC GCTACAAAAA TGAAGCAATG GAGACCGGCC CGCTGGCACG GCGCGCGCTG
GCCTACGCCC GTAAAGAGCA GGAAACAAGA ACCATGCTGG ATACTTTTTT CAAAGATTCC
GGCATGAAGC CTGATCAGTT GTTTTCCACC ATGGGGCGTA CCGTATGCCG TGTGGTGGAA
ACAACCATGC TTATGCGGCG CATGCAGGGC TGGATTGACG ATACCGAAGC ACGCATCAAA
GCCGGTGAAG ACACCATATA CACAGAATGG AAAATGCCGG ACTCCGCCCG CGGCGTGGGC
TTTTGCTGTG TAACCCGCGG CGCCCTGTCG CACTGGATAG ACATCAAGGA AGCTAAAATA
CACAACTTCC AGATGGTCGT ACCTTCTACA TGGAATCTGG GGCCCCGCTG CGCCAACGGA
AAACTGAGCG CGGGCGAGCA GTCACTTATC GGATGCCCGT GTCCCGACCC GGACCGCCCT
GTGGAAATTC TGCGCACCAT TCATTCATTC GATCCCTGCA TCGCCTGCTC GGTTCATCTG
CTGGATGCAC AGAAAAAGCC TCTCGGCAGC TTTAAGGTAT TGTAG
|
|---|
| Protein sequence | MSQKKMNHTG KRLIVDPVTR IEGHLKIEVE LENNKVKDAW VSTQLFRGIE MILKGRPPED
APLFTQRACG VCTNTHALTS IRAIEDALEI KVPPLAQLMR HLILSALIVH DHLVHFYHLH
GLDWIDVAAA TTADPAKAGK IVGSTSNRSD DPSELFIIQK RLKEFVKSGQ LGFLEKAYFL
GGNDAYKLSP EENLIMSAHY FEGLRIQLEL GRAMALFAGK NPHAQSMVVG GMTCYDSLRP
EVIGHFRKIW EHCKEFVENA MMPDILLMTR RYPEALAYGR TSNFFAFADF HDPVTGKDPY
FTSGVLWGND LTKHEELDPG HINEHVARSW YEGDTPRTPY EGATEPHYTS YEDKEKYSWS
KAPRYKNEAM ETGPLARRAL AYARKEQETR TMLDTFFKDS GMKPDQLFST MGRTVCRVVE
TTMLMRRMQG WIDDTEARIK AGEDTIYTEW KMPDSARGVG FCCVTRGALS HWIDIKEAKI
HNFQMVVPST WNLGPRCANG KLSAGEQSLI GCPCPDPDRP VEILRTIHSF DPCIACSVHL
LDAQKKPLGS FKVL
|
|---|
| |