| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1163 |
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| Symbol | |
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| ID | 4021639 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 1323584 |
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| End bp | 1325377 |
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| Gene Length | 1794 bp |
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| Protein Length | 597 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637961355 |
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| Product | nickel-dependent hydrogenase, large subunit |
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| Protein accession | YP_568302 |
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| Protein GI | 91975643 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.28682 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAACG TCACGACACC CAACGGCTTC AAGCTCGACA ATGGCGGCCG CCGCGTCGTC
GTCGATCCGG TGACCCGGAT CGAGGGCCAT CTGCGCGTCG AGGTCAATGT CGACAGCGCC
AACGTCATCC GCAACGCGGT GTCCACCGGC ACGATGTGGC GCGGCATCGA GATCATCCTG
AAGGGTCGCG ACCCGCGCGA CGCCTGGGCC TTCACCCAGC GGATCTGCGG CGTCTGCACC
GGCACCCACG CGCTGACCTC GGTGCGCGCG GTGGAGAACG CTCTCGACAT CAAGATCCCG
GAAAACGCCA ACACCATCCG CAACATCATG CAGCTCACGC TGTATGTGCA CGACCATATC
GTCCACTTCT ATCACCTCCA CGCGCTCGAC TGGGTCGACG TGGTGTCGGC GCTTTCGGCC
GATCCGAAGG CGACCTCGGC GCTGGCGCAG AGCATTTCGT CGTGGCCGCT GTCGAGCCCG
GGTTACTTCA AGGATCTGCA GACGAGACTG AAGAAATTCG TCGAGAGCGG GCAGCTCGGC
CCGTTCAAGA ACGGCTATTG GGGCCACCCG GCCTATAAGC TGCCGCCGGA AGCCAATCTG
ATGGCGGTCG CGCATTATCT GGAAGCGCTG GATTTCCAGA AGGAGATGGT GAAGATCCAC
ACCATCTACG GCGGCAAGAA TCCGCATCCG AACTGGCTGG TCGGCGGCGT GCCCTGCGCG
ATCAATCTCG ACGGCGTCGG CGCGGTCGGC GCGATCAACA TGGAGCGGCT CAATCTGGTC
TCCTCGATCA TCGACCAGAT GGTGACGTTC ACCGAGCAGG TCTATCTGCC CGATCTCCAG
GCGATCGCCT CGTTCTACAA GGACTGGACC TTCGGTGGCG GGCTGTCCTC GAAATCGGTG
TTGAGCTACG GCGATATCCC CGAGCACGCC AACGACTATT CGGCGTCGTC ACTGAAGCTG
CCGCGCGGCG CGATCATCAA CGGCAATCTC GCCGAAGTCC TCCCGGTCGA TCTCACCGAT
CCGTCGCAGG TGCAGGAGTT CGTCGCGCAT TCCTGGTACA AATATCCCGA CGAGACCAAG
GGCCTGCATC CGTGGGACGG CGTCACCGAA CCGAACTTCA AGCTCGGTCC CAACGCCAAG
GGCACCAAGA CCCGGATCGA GGCGCTCGAC GAGGACGCCA AATACTCCTG GATCAAATCG
CCGCGCTGGA AAGGCAACGC GGTCGAGGTC GGGCCGCTGG CGCGCTACAT CGTCGGCTAT
GCCCAGAACA AGCCGGAGTT CAAGGAGCCG ACCGACAAGC TGCTGAAGGA TCTCGGCCTG
CCGCTACCGG CGCTGTTCTC GACGCTCGGC CGCACCGCGG CCCGGGCGTT GGAGGCGCAG
TGGGCGGCGC GTCAGCTGCG TTACTTCCAG GACAAGCTGA TCGCATCGCT GAAGGCCGGC
GACAGCGCCA CCGCCAATGT CGACAAATGG AAGCCGGAGA GCTGGGCGAA GGACGTCAAG
GGCGTCGGCT TCACCGAGGC GCCGCGCGGC GCGCTCGGCC ACTGGGTCAA GATCAAGGAC
GGCAAGATCG ACAATTACCA GGCGGTGGTG CCGACCACCT GGAACGGCAG CCCGCGCGAT
CCCAAGGGCG GCATCGGCGC GTTCGAGGCG TCGCTGCTCG ACACCCCGAT GGCCGATCCG
AATCAACCGC TGGAGATTCT GCGGACGCTG CATTCGTTCG ATCCCTGCCT CGCCTGCTCG
ACGCATGTGA TGAGCGAGGA CGGCCAGGAA ATGACCAAGG TCACCGTGCG CTGA
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| Protein sequence | MSNVTTPNGF KLDNGGRRVV VDPVTRIEGH LRVEVNVDSA NVIRNAVSTG TMWRGIEIIL
KGRDPRDAWA FTQRICGVCT GTHALTSVRA VENALDIKIP ENANTIRNIM QLTLYVHDHI
VHFYHLHALD WVDVVSALSA DPKATSALAQ SISSWPLSSP GYFKDLQTRL KKFVESGQLG
PFKNGYWGHP AYKLPPEANL MAVAHYLEAL DFQKEMVKIH TIYGGKNPHP NWLVGGVPCA
INLDGVGAVG AINMERLNLV SSIIDQMVTF TEQVYLPDLQ AIASFYKDWT FGGGLSSKSV
LSYGDIPEHA NDYSASSLKL PRGAIINGNL AEVLPVDLTD PSQVQEFVAH SWYKYPDETK
GLHPWDGVTE PNFKLGPNAK GTKTRIEALD EDAKYSWIKS PRWKGNAVEV GPLARYIVGY
AQNKPEFKEP TDKLLKDLGL PLPALFSTLG RTAARALEAQ WAARQLRYFQ DKLIASLKAG
DSATANVDKW KPESWAKDVK GVGFTEAPRG ALGHWVKIKD GKIDNYQAVV PTTWNGSPRD
PKGGIGAFEA SLLDTPMADP NQPLEILRTL HSFDPCLACS THVMSEDGQE MTKVTVR
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