| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2104 |
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| Symbol | |
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| ID | 4279016 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2504906 |
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| End bp | 2506609 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638134893 |
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| Product | nickel-dependent hydrogenase, large subunit |
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| Protein accession | YP_750788 |
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| Protein GI | 114563275 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAAC GTGTCGTTAT CGACCCTATC ACCCGTATCG AAGGCCATTT ACGTGTCGAA
GTTGAAGTGG ATGACAATAA TGTCATTACC AAGGCTTGGT CTTCGTCGAC CTTATGGCGA
GGTATTGAGG TTATTTTAAA AGGCCGAACT CCAATGGATG TGGGCTTAAT TGTGCAGCGT
ATTTGTGGCG TATGTACCTA TTCGCATTAT CGTTGCGGTA CTGAGGCAGT TGAAAATGCC
CTTGGGGTTA AGATCCCACT TAATGCTAAA TACCTGCGCA GCATAATGCA GTCATCACTC
TACATGCATG ATCATATTGT GCATTTTTAT CATCTACATG GTTTGGATTG GGTGGATGTG
GTATCAGCAT TAAGTGCCGA CCCAGCCTTA GCGGCTAAAG TGGCAATGAA TTACTCTGAT
GCACCGATTG CTGCCGGTGA AGGTGAATTA AAAGCGGTAC AGGCACGAGT GAAAGGCTTG
GTCGAAACCG GAAAACTGGG TCCATTTGCC AATGCCTATT GGGGTAATGG TACTTATCGT
TTTACCCCTG AGCAAAACCT CATTGCGTTA TCGCATTATT TAAAAGCACT TGAAGTACAA
CGTGTGGCAG CTGAAATGTT AGCTATTTTT GGCGGCAAAT CGCCACATCC ACAATCTATT
GTTGTGGGCG GCGTAACCTC AGTACGTGAC ATGTTAAGCC CTGCCCGTTT ACAAGAATGG
AAACAAAAGC ACGCTATCGT GCAAGACTTT ATTGAGCGAG CTTACCAAGC CGATATTGTG
ATGGCAGCAG AAGCATTTGG TACAGAAGCC AGTGTACTTG GCGGCGTAAA TGTTAACAGT
TTCTTGTGCG GTGAAGATTT TATTACGACC GATGGCGAGT ACTTATTTAA CCAAGGGGTC
ATTTTAAACG GTGATTTAGC CAATGTATTG GATATCGACC CGAGCTTGAT TAAAGAAGAT
GTGACTCACG CCTGGTATAA AGCTGATGGT CCGCAACATC CATATCAAGG AACCACCATT
CCTGATTACA CCGGGTTTAT TGAGCGTGAC ACTGTGTATG GCAAATTGCC AACCATTAAT
GGCGATGGTA AATACTCGTG GGTTAAGTCT CCGCGTTACC AAGATGAACC GATTGAAGTA
GGTCCACTAG CGTGTTTGTT GGTTAACTAT GCCCGTGGTA ATCAAGTTGT GGTCAATGCG
GTTGATGGTT TGTTAGCTCG CACTGGTTTG CCTCTTGAAG CATTGTTTAC CACTTTAGGC
CGTACTGCTG CACGTATGCT GCAAACGGTA TTGGTTGGCC AGGCCAGTTT GCAAACCTTT
GATGCTTTAC TGGTAAACAT ACAGTCGGAT CAGTCTACTT ACGTTAAACC TGAAATAGAC
CCAGACCGTG TTTACGAAGG TTATTCGATG ATTGAAGCCC CTCGCGGCAT GTTAAGTCAT
TGGATCCGGA TTAAAGATGC CAAAGTCGAA AACTACCAAG CTGTGGTTCC TACTACCTGG
AACGCAGGCC CTGTGGATGC TAATGGTAAA ATGGGCCCAT ACGAAGCTTC GTTGATTGGT
TTGAAACTTG AAGACCCAAC TAAGCCGTTA GAAGTCATTC GCATTATTCA TTCCTTTGAT
CCTTGTATGG CGTGTTCCGT TCACGTGATG GATTACAAGA AACATACCCT AGGTCAATTT
AAAATTGATC CAAATGGGTT TTAA
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| Protein sequence | MSKRVVIDPI TRIEGHLRVE VEVDDNNVIT KAWSSSTLWR GIEVILKGRT PMDVGLIVQR
ICGVCTYSHY RCGTEAVENA LGVKIPLNAK YLRSIMQSSL YMHDHIVHFY HLHGLDWVDV
VSALSADPAL AAKVAMNYSD APIAAGEGEL KAVQARVKGL VETGKLGPFA NAYWGNGTYR
FTPEQNLIAL SHYLKALEVQ RVAAEMLAIF GGKSPHPQSI VVGGVTSVRD MLSPARLQEW
KQKHAIVQDF IERAYQADIV MAAEAFGTEA SVLGGVNVNS FLCGEDFITT DGEYLFNQGV
ILNGDLANVL DIDPSLIKED VTHAWYKADG PQHPYQGTTI PDYTGFIERD TVYGKLPTIN
GDGKYSWVKS PRYQDEPIEV GPLACLLVNY ARGNQVVVNA VDGLLARTGL PLEALFTTLG
RTAARMLQTV LVGQASLQTF DALLVNIQSD QSTYVKPEID PDRVYEGYSM IEAPRGMLSH
WIRIKDAKVE NYQAVVPTTW NAGPVDANGK MGPYEASLIG LKLEDPTKPL EVIRIIHSFD
PCMACSVHVM DYKKHTLGQF KIDPNGF
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