| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1907 |
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| Symbol | |
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| ID | 5610803 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2291743 |
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| End bp | 2293446 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932793 |
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| Product | nickel-dependent hydrogenase, large subunit |
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| Protein accession | YP_001473646 |
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| Protein GI | 157375046 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.022032 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAAGC GTGTAGTAAT CGATCCCATT ACCCGTATTG AGGGTCACTT GCGCGTCGAA
GTCGAAGTCG ACGAAAACAA TGTAATTAAC AAAGCTTGGT CATCTTCTAC TCTTTGGCGC
GGCATCGAAG TCATCCTTAA GGGTCGTACC CCTATGGATG TCGGACTGAT CGTACAGAGA
ATTTGTGGTG TTTGTACTTA TTCTCATTAC CGTGCCGGTA TTGAAGCAGT TGAAAATGCA
TTAGGAACTG AGATCCCTCT TAATGCGAAA TATCTGCGTT CATTGATGCA GACATCACTG
TATATGCATG ACCATATCGT TCATTTCTAT CACCTACATG GTTTGGACTG GGTAGATGTC
GTATCTGCAC TGAGTGCCGA TCCTGCTGCT GCGGCGCAAG AAGCGCTCAA GTATACCGCC
AATCCTATTT CAGCCGGTGA AGGTGAACTA CGTGCCGTAC AAGAGCGCGT TAAAGGTTTC
GTTGAAACTG GTAAGCTTGG CCCATTCGCT AACGCGTATT GGGGTAATGG CACTTACAAG
TTTACACCTG AGCAAAACCT GATCGCCCTA TCTCACTACC TTAAGGCACT GGAAGTTCAA
CGTGTCGCGG CAGAGATGTT GGCTATCTTC GGTGGTAAGT CTCCACATCC ACAATCTTTG
GTTGTTGGTG GTGTGACTTC GGTTCGAGAT ATGTTGAGCC CTGCGCGTCT TCAGGAATGG
AAGCAGAAGC ATGCTATCGT GACTGACTTC ATCCACCGTG CCTATAAAGC CGACATCGTT
ATGGCTGCAG CAGCGTTCGG TGGTGAACCT AGTGTACTTG GTGGCGTAAA CGTGAAGAAC
TTCATGGCTA CCAACGACTT CGTATTGGCC GATGGTCAGT ACATGTTTGA TCAGGGTGTG
ATCATGAACG GCGATCTTGC CGGTGTGACC GACATTAACC CAGATCTCAT CAAGGAAGAC
GTGACCCACG CCTGGTACAA AGCCGACGGC GCACAGCATC CGTATGACGG AACAACGGTT
CCAGACTACA CAGGTTTTGT TGAGCGTGAC ACAGTCTACG GTAAGCTACC TACCCTTGAT
GGTGACGGTA AGTACTCTTG GGTTAAGTCT CCACGTTATG ACGATGAGCC AATGGAAGTG
GGACCACTTG CAAGTTTGCT AGTGAGTTAC GCTAAAGGCA ACAAGGTTGT TGTTGACTCG
GTCAATGGTC TGCTTGAAGC CACTGGTTTG CCTATTGAAG CCCTGTTCAC GACCTTAGGC
CGTACTGCGG CGCGTATGTT ACAGACTGTA ATTGTCGCCG AAGAGGGTCT GAAGACGTTC
GATGCGATGC TTGTCAACAT GCAATCTGAT GAGTCTACCT ACGTTAAACC TGTAATGGAT
TCCAGTCAGG AGTACGTTGG ACACTCGATG ATCGAAGCGC CTCGCGGCAT GCTAAGTCAC
TGGATACGTA TTAAAGGCGG TCTTGTAGAG AACTATCAAG CCGTAGTACC GACAACCTGG
AACGCAGGTC CCGTCGATGC CAACGGAAAG ATGGGTCCTT ATGAAGCTTC TTTGATTGGT
CTGAAGTTGG AAGATCCAAC TAAACCACTG GAAGTCATAC GAATCATTCA CTCATTTGAC
CCTTGTATGG CTTGTTCTGT ACATGTTATG GACTTTAAGG GACAAGAGTT GGGTGAATTC
CGTATCGATC CCAACGGCCA ATAA
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| Protein sequence | MSKRVVIDPI TRIEGHLRVE VEVDENNVIN KAWSSSTLWR GIEVILKGRT PMDVGLIVQR
ICGVCTYSHY RAGIEAVENA LGTEIPLNAK YLRSLMQTSL YMHDHIVHFY HLHGLDWVDV
VSALSADPAA AAQEALKYTA NPISAGEGEL RAVQERVKGF VETGKLGPFA NAYWGNGTYK
FTPEQNLIAL SHYLKALEVQ RVAAEMLAIF GGKSPHPQSL VVGGVTSVRD MLSPARLQEW
KQKHAIVTDF IHRAYKADIV MAAAAFGGEP SVLGGVNVKN FMATNDFVLA DGQYMFDQGV
IMNGDLAGVT DINPDLIKED VTHAWYKADG AQHPYDGTTV PDYTGFVERD TVYGKLPTLD
GDGKYSWVKS PRYDDEPMEV GPLASLLVSY AKGNKVVVDS VNGLLEATGL PIEALFTTLG
RTAARMLQTV IVAEEGLKTF DAMLVNMQSD ESTYVKPVMD SSQEYVGHSM IEAPRGMLSH
WIRIKGGLVE NYQAVVPTTW NAGPVDANGK MGPYEASLIG LKLEDPTKPL EVIRIIHSFD
PCMACSVHVM DFKGQELGEF RIDPNGQ
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