| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_1126 |
|---|
| Symbol | |
|---|
| ID | 8136448 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | + |
|---|
| Start bp | 1318281 |
|---|
| End bp | 1319960 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644868737 |
|---|
| Product | Cytochrome-c3 hydrogenase |
|---|
| Protein accession | YP_003020945 |
|---|
| Protein GI | 253699756 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 150 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAGAA TCACGCTTGA TCCCATCACC CGCATCGAAG GGCACCTCAG GATAGACGTC
GAAGCCAACG GCGGCAAGGT AACCAACGCC TGGTCCTCGG CCCAAATGTG GCGCGGCATA
GAGGTCATCC TCAAGGGGCG CGCCCCCGAG GACGCCTGGA GCTTCGTGCA ACGCTTTTGC
GGCGTCTGCA CCACGGTGCA CGCCATCTCC TCGATCCGCG CCGTCGAGCA CGCCCTGAAC
GTCGAGGTGC CGTTAAACGC CCAGTACATC CGCAACATCA TGATCGCCCA GCACTCGGTG
CAGGACCACA TCGTCCACTT CTACCACCTC TCGGCGCTGG ACTGGGTCGA CATCGTCTCG
GCTCTCTCCG CAGACCCCAA GAAGACGGCC CAGATCGCCC AGAGCATCTC CGACTGGCCG
GGGAATTCCG AGAAGGAGTT CAAGGCGGTC CAGGACAAGC TGAAGGCGTT CGTCGCCGGC
GGCAAGCTAG GCATCTTCGC CTCCGGCTAC TGGGGGCATC CGGCCATGAA GCTCTCCCCC
GAGGTGAACC TGATGGCGGT GGCCCACTAC CTGAAGGCGC TCGACTACCA GAGAAAGGCG
TCCCAGGCGA CCGCCATCCT GGGGGGGAAG AACCCGCACA TCCAGAACCT GGTGGTGGGG
GGCGTCGCCA CCGCGATCAA CACCGAGAAC ATCGCCACCC TCAACATGGA GCGCCTCATC
TACTTGAGGA CCCTGATGGA GGAGACCCGA GACTTCGTGC AGAAGGTGTA CTACCCGGAC
CTCCTGGCCA TCGCCGGCGC CTACAAGGAG TGGTTCAAGT ACGGGGCGGG GGTCACCAAC
TACATGGCGG TCCCGGAGTT CCCGGAGGAC ACCAAGAACG GCAAGTTCTC GCTCCCGGGC
GGGGTGGTCA TGGGCGGGAA CATCGCCGGG ATCAGGCCGG TCAAGGACCA CCGCGACGAG
TACCTGATCA AGAACATCAA GGAGAACGTC ACCCACGCCT GGTACGAGGG GAACGGCACG
CTGCACCCCT GGGAAGGGGA GACCAAGCCC GACTACACCG ACTTCAAGGA AAACGGCAAG
TACTCCTGGT GCAAGGCGCC GACCCTGGAC GGAAAGCCGG TGCAGGTAGG TCCTCCGGCC
CAGATCATGG CCGCCTACGC CGCCGGAAAC CCGAAGGTGA AAAAGCTCGT CGACGGAGCC
GTCTCCACCC TCGGCCTTTC CATGAAGGAC ATCCACTCCA CCATGGGGCG CCTGTACTGC
CGCGGCGCGC GCGCCCACAT CATGGCCGAC ATCGCGCTGG AAAACCTGGA CAAGCTGATC
GCCAACATCG CCACCGGCGA TCAAACTTAC GCGAACCACA CCGAGATCCC CAAAGGGGAG
TACCGCGGGG TGGGCTTCCA CGAGGCGCCG CGCGGCACCT TGAGCCACTG GATCGTCATC
AAGGACAAGA AGATCGAGAA CTATCAGGCC GTGGTCCCCT CCACCTGGAA CGCCGCTCCC
AGAAACGACA AGGGAGAGCT CGGCCCCTAC GAGGCGTCCT TGGTGGGGAA CCCCATCGCG
GACAGCAGCA AGCCGCTGGA GGTCTTGAGG ACCATCCACT CCTTCGACCC CTGCATTGCC
TGCGCCGTGC ACACGATCGA CCCCGAAGGG AAGGAAATCA CCAAGGTGAA GGTGCTGTAA
|
|---|
| Protein sequence | MSRITLDPIT RIEGHLRIDV EANGGKVTNA WSSAQMWRGI EVILKGRAPE DAWSFVQRFC
GVCTTVHAIS SIRAVEHALN VEVPLNAQYI RNIMIAQHSV QDHIVHFYHL SALDWVDIVS
ALSADPKKTA QIAQSISDWP GNSEKEFKAV QDKLKAFVAG GKLGIFASGY WGHPAMKLSP
EVNLMAVAHY LKALDYQRKA SQATAILGGK NPHIQNLVVG GVATAINTEN IATLNMERLI
YLRTLMEETR DFVQKVYYPD LLAIAGAYKE WFKYGAGVTN YMAVPEFPED TKNGKFSLPG
GVVMGGNIAG IRPVKDHRDE YLIKNIKENV THAWYEGNGT LHPWEGETKP DYTDFKENGK
YSWCKAPTLD GKPVQVGPPA QIMAAYAAGN PKVKKLVDGA VSTLGLSMKD IHSTMGRLYC
RGARAHIMAD IALENLDKLI ANIATGDQTY ANHTEIPKGE YRGVGFHEAP RGTLSHWIVI
KDKKIENYQA VVPSTWNAAP RNDKGELGPY EASLVGNPIA DSSKPLEVLR TIHSFDPCIA
CAVHTIDPEG KEITKVKVL
|
|---|
| |