More than 300 homologs were found in PanDaTox collection
for query gene Dde_2135 on replicon NC_007519
Organism: Desulfovibrio desulfuricans subsp. desulfuricans str. G20



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011769  DvMF_0273  nickel-dependent hydrogenase large subunit  77.46 
 
 
488 aa  811    Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.328721 
 
 
-
 
NC_007519  Dde_2135  periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing  100 
 
 
488 aa  1014    Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1969  nickel-dependent hydrogenase large subunit  70.53 
 
 
514 aa  734    Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.668451  n/a   
 
 
-
 
NC_008751  Dvul_1248  nickel-dependent hydrogenase, large subunit  74.39 
 
 
488 aa  767    Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.210122 
 
 
-
 
NC_013385  Adeg_1231  nickel-dependent hydrogenase large subunit  54.62 
 
 
458 aa  523  1e-147  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1787  nickel-dependent hydrogenase large subunit  50.42 
 
 
481 aa  479  1e-134  Ammonifex degensii KC4  Bacteria  normal  0.993845  n/a   
 
 
-
 
NC_010424  Daud_1042  nickel-dependent hydrogenase, large subunit  48.65 
 
 
485 aa  465  9.999999999999999e-131  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.90765  n/a   
 
 
-
 
NC_002936  DET0110  [Ni/Fe] hydrogenase, group 1, large subunit, putative  44.73 
 
 
526 aa  425  1e-118  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_120  Ni/Fe hydrogenase, large subunit  44.53 
 
 
526 aa  421  1e-116  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0258  nickel-dependent hydrogenase, large subunit  44.34 
 
 
526 aa  416  9.999999999999999e-116  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_2742  Hydrogen:quinone oxidoreductase  41.94 
 
 
518 aa  369  1e-101  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000126046  n/a   
 
 
-
 
NC_010424  Daud_1940  hydrogen:quinone oxidoreductase  40.34 
 
 
475 aa  355  1e-96  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3147  nickel-dependent hydrogenase large subunit  38.59 
 
 
570 aa  343  5e-93  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0270  nickel-dependent hydrogenase large subunit  38.52 
 
 
567 aa  341  1e-92  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.11146 
 
 
-
 
NC_013223  Dret_0266  nickel-dependent hydrogenase large subunit  39.93 
 
 
566 aa  339  7e-92  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.322067  normal 
 
 
-
 
NC_009523  RoseRS_2320  nickel-dependent hydrogenase, large subunit  37.93 
 
 
570 aa  337  1.9999999999999998e-91  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_3270  nickel-dependent hydrogenase large subunit  40.58 
 
 
517 aa  334  2e-90  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1071  nickel-dependent hydrogenase large subunit  36.31 
 
 
470 aa  333  6e-90  Clostridium cellulolyticum H10  Bacteria  normal  0.018808  n/a   
 
 
-
 
NC_008554  Sfum_2952  nickel-dependent hydrogenase, large subunit  38.53 
 
 
546 aa  329  9e-89  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.437472 
 
 
-
 
NC_009483  Gura_0873  nickel-dependent hydrogenase, large subunit  36.96 
 
 
569 aa  328  1.0000000000000001e-88  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3331  nickel-dependent hydrogenase, large subunit  36.86 
 
 
566 aa  328  2.0000000000000001e-88  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_1245  nickel-dependent hydrogenase, large subunit  38.22 
 
 
566 aa  328  2.0000000000000001e-88  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.11159 
 
 
-
 
NC_013173  Dbac_0766  nickel-dependent hydrogenase large subunit  37.73 
 
 
569 aa  327  4.0000000000000003e-88  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0122  nickel-dependent hydrogenase, large subunit  36.81 
 
 
564 aa  326  7e-88  Geobacter sulfurreducens PCA  Bacteria  normal  0.254382  n/a   
 
 
-
 
NC_009483  Gura_0544  nickel-dependent hydrogenase, large subunit  37.75 
 
 
566 aa  322  9.999999999999999e-87  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2138  periplasmic (NiFe) hydrogenase, large subunit, isozyme 1  36.94 
 
 
568 aa  320  3.9999999999999996e-86  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2055  nickel-dependent hydrogenase large subunit  36.35 
 
 
566 aa  314  1.9999999999999998e-84  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1946  nickel-dependent hydrogenase, large subunit  35.98 
 
 
560 aa  313  3.9999999999999997e-84  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_12910  Ni,Fe-hydrogenase I large subunit  36.76 
 
 
545 aa  309  8e-83  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.343906  normal  0.388227 
 
 
-
 
NC_002939  GSU0785  nickel-dependent hydrogenase, large subunit  35.67 
 
 
560 aa  308  1.0000000000000001e-82  Geobacter sulfurreducens PCA  Bacteria  normal  0.433799  n/a   
 
 
-
 
NC_011883  Ddes_1038  nickel-dependent hydrogenase large subunit  37.83 
 
 
558 aa  305  1.0000000000000001e-81  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.368471  n/a   
 
 
-
 
NC_011146  Gbem_3136  nickel-dependent hydrogenase large subunit  34.69 
 
 
559 aa  305  1.0000000000000001e-81  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2503  nickel-dependent hydrogenase, large subunit  35.52 
 
 
567 aa  303  3.0000000000000004e-81  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.153272 
 
 
-
 
NC_012918  GM21_1126  Cytochrome-c3 hydrogenase  34.5 
 
 
559 aa  303  4.0000000000000003e-81  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013170  Ccur_08540  Ni,Fe-hydrogenase I large subunit  35.92 
 
 
548 aa  300  4e-80  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal  0.481337 
 
 
-
 
NC_009921  Franean1_3404  nickel-dependent hydrogenase large subunit  36.31 
 
 
573 aa  298  1e-79  Frankia sp. EAN1pec  Bacteria  normal  0.37903  normal 
 
 
-
 
NC_009441  Fjoh_3907  nickel-dependent hydrogenase, large subunit  34.3 
 
 
578 aa  298  2e-79  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_1276  nickel-dependent hydrogenase large subunit  35.94 
 
 
554 aa  297  3e-79  Eggerthella lenta DSM 2243  Bacteria  normal  0.438048  normal 
 
 
-
 
NC_011060  Ppha_1861  nickel-dependent hydrogenase large subunit  35.62 
 
 
572 aa  296  4e-79  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0147  nickel-dependent hydrogenase large subunit  34.2 
 
 
559 aa  293  5e-78  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_0856  nickel-dependent hydrogenase large subunit  35.5 
 
 
572 aa  293  7e-78  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3971  nickel-dependent hydrogenase, large subunit  35.34 
 
 
570 aa  290  3e-77  Dechloromonas aromatica RCB  Bacteria  normal  0.533836  normal 
 
 
-
 
NC_008639  Cpha266_0973  nickel-dependent hydrogenase, large subunit  34.54 
 
 
572 aa  290  3e-77  Chlorobium phaeobacteroides DSM 266  Bacteria  decreased coverage  0.000120136  n/a   
 
 
-
 
NC_011899  Hore_03860  nickel-dependent hydrogenase large subunit  35.23 
 
 
470 aa  290  4e-77  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2884  nickel-dependent hydrogenase large subunit  34.04 
 
 
585 aa  288  1e-76  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.308731  normal 
 
 
-
 
NC_007908  Rfer_4091  nickel-dependent hydrogenase, large subunit  34.43 
 
 
568 aa  288  1e-76  Rhodoferax ferrireducens T118  Bacteria  normal  0.0995107  n/a   
 
 
-
 
NC_011761  AFE_3286  [Ni/Fe] hydrogenase, large subunit  34.04 
 
 
585 aa  288  1e-76  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02870  hydrogenase 2, large subunit  34.93 
 
 
567 aa  287  2.9999999999999996e-76  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0702  nickel-dependent hydrogenase large subunit  34.93 
 
 
567 aa  287  2.9999999999999996e-76  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_3280  hydrogenase 2 large subunit  34.93 
 
 
567 aa  287  2.9999999999999996e-76  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_02819  hypothetical protein  34.93 
 
 
567 aa  287  2.9999999999999996e-76  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3463  hydrogenase 2 large subunit  34.93 
 
 
567 aa  287  2.9999999999999996e-76  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4306  hydrogenase 2 large subunit  34.93 
 
 
567 aa  287  2.9999999999999996e-76  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.228665  normal 
 
 
-
 
NC_009800  EcHS_A3174  hydrogenase 2 large subunit  34.93 
 
 
567 aa  287  2.9999999999999996e-76  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E3421  hydrogenase 2 large subunit  34.93 
 
 
567 aa  287  2.9999999999999996e-76  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0699  hydrogenase 2 large subunit  34.93 
 
 
567 aa  286  5e-76  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_0854  nickel-dependent hydrogenase large subunit  34.36 
 
 
572 aa  285  2.0000000000000002e-75  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.255543 
 
 
-
 
NC_012918  GM21_2915  nickel-dependent hydrogenase large subunit  34.24 
 
 
571 aa  283  4.0000000000000003e-75  Geobacter sp. M21  Bacteria  n/a    normal  0.289083 
 
 
-
 
NC_009475  BBta_p0179  uptake hydrogenase large subunit  34.9 
 
 
570 aa  283  5.000000000000001e-75  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_008009  Acid345_4240  nickel-dependent hydrogenase, large subunit  33.58 
 
 
563 aa  283  6.000000000000001e-75  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_1592  nickel-dependent hydrogenase large subunit  34.18 
 
 
572 aa  279  7e-74  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.663154  normal 
 
 
-
 
NC_011146  Gbem_1368  nickel-dependent hydrogenase large subunit  33.88 
 
 
571 aa  279  7e-74  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A3495  hydrogenase 2 large subunit  34.01 
 
 
567 aa  279  9e-74  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.233634  normal 
 
 
-
 
NC_011080  SNSL254_A3400  hydrogenase 2 large subunit  34.01 
 
 
567 aa  279  9e-74  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C3394  hydrogenase 2 large subunit  34.01 
 
 
567 aa  279  9e-74  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.571998 
 
 
-
 
NC_011149  SeAg_B3320  hydrogenase 2 large subunit  34.01 
 
 
567 aa  279  1e-73  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.118706  n/a   
 
 
-
 
NC_011094  SeSA_A3329  hydrogenase 2 large subunit  34.01 
 
 
567 aa  278  1e-73  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_007512  Plut_1447  hydrogenase large chain  34.54 
 
 
572 aa  277  2e-73  Chlorobium luteolum DSM 273  Bacteria  normal  0.333249  normal 
 
 
-
 
NC_011901  Tgr7_1266  Ni-Fe hydrogenase large chain  34.16 
 
 
583 aa  278  2e-73  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_1105  nickel-dependent hydrogenase large subunit  33.93 
 
 
584 aa  278  2e-73  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3520  nickel-dependent hydrogenase large subunit  34 
 
 
567 aa  277  4e-73  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_3368  nickel-dependent hydrogenase large subunit  32.43 
 
 
570 aa  276  9e-73  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1155  nickel-dependent hydrogenase large subunit  34.22 
 
 
597 aa  274  3e-72  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.295857  n/a   
 
 
-
 
NC_011149  SeAg_B1633  [Ni/Fe] hydrogenase, large subunit  32.28 
 
 
600 aa  273  6e-72  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2531  hydrogenase 2 large subunit  32.36 
 
 
568 aa  272  8.000000000000001e-72  Dickeya dadantii Ech703  Bacteria  normal  0.597514  n/a   
 
 
-
 
NC_011083  SeHA_C1709  [Ni/Fe] hydrogenase large subunit  32.28 
 
 
600 aa  272  1e-71  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A1650  [Ni/Fe] hydrogenase large subunit  32.28 
 
 
600 aa  272  1e-71  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_0805  nickel-dependent hydrogenase large subunit  34.25 
 
 
465 aa  272  1e-71  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A1642  [Ni/Fe] hydrogenase, large subunit  32.28 
 
 
600 aa  272  1e-71  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.251142  normal 
 
 
-
 
NC_011205  SeD_A1798  [Ni/Fe] hydrogenase, large subunit  32.28 
 
 
600 aa  272  1e-71  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.570579  normal 
 
 
-
 
NC_007520  Tcr_2037  nickel-dependent hydrogenase, large subunit  33.33 
 
 
568 aa  271  2e-71  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1997  uptake hydrogenase large subunit precursor  34.15 
 
 
596 aa  271  2.9999999999999997e-71  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3988  nickel-dependent hydrogenase, large subunit  33.92 
 
 
598 aa  270  4e-71  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_50580  Membrane bound nickel-dependent hydrogenase, large subunit, HoxG  33.97 
 
 
602 aa  266  5e-70  Azotobacter vinelandii DJ  Bacteria  normal  0.980558  n/a   
 
 
-
 
NC_007925  RPC_3771  nickel-dependent hydrogenase, large subunit  33.33 
 
 
597 aa  266  5.999999999999999e-70  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.292608  normal  0.910106 
 
 
-
 
NC_010627  Bphy_7264  nickel-dependent hydrogenase large subunit  32.92 
 
 
596 aa  266  8.999999999999999e-70  Burkholderia phymatum STM815  Bacteria  normal  normal  0.340015 
 
 
-
 
NC_008751  Dvul_0718  nickel-dependent hydrogenase, large subunit  34.2 
 
 
549 aa  265  1e-69  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.338951 
 
 
-
 
NC_009484  Acry_0337  nickel-dependent hydrogenase, large subunit  31.7 
 
 
598 aa  265  2e-69  Acidiphilium cryptum JF-5  Bacteria  normal  0.0168031  n/a   
 
 
-
 
NC_012912  Dd1591_1413  hydrogenase 2 large subunit  31.63 
 
 
568 aa  264  2e-69  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1163  nickel-dependent hydrogenase, large subunit  32.94 
 
 
597 aa  264  3e-69  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.28682  normal 
 
 
-
 
NC_008687  Pden_3098  nickel-dependent hydrogenase, large subunit  32.92 
 
 
597 aa  263  4e-69  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_0478  nickel-dependent hydrogenase, large subunit  32.49 
 
 
577 aa  263  4.999999999999999e-69  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_1435  nickel-dependent hydrogenase, large subunit  32.43 
 
 
577 aa  261  2e-68  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.611833  n/a   
 
 
-
 
NC_008340  Mlg_2028  nickel-dependent hydrogenase, large subunit  31.93 
 
 
595 aa  261  2e-68  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1678  hydrogenase large chain  33.52 
 
 
567 aa  261  3e-68  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_0506  nickel-dependent hydrogenase large subunit  32.12 
 
 
577 aa  259  8e-68  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0511  nickel-dependent hydrogenase large subunit  32.12 
 
 
577 aa  259  9e-68  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA0165  nickel-iron hydrogenase, large subunit  32.16 
 
 
597 aa  259  1e-67  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0497936  n/a   
 
 
-
 
NC_009092  Shew_1764  nickel-dependent hydrogenase, large subunit  32.97 
 
 
568 aa  258  1e-67  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1162  nickel-dependent hydrogenase, large subunit  31.92 
 
 
596 aa  258  2e-67  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.122791  n/a   
 
 
-
 
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