| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_0718 |
|---|
| Symbol | |
|---|
| ID | 4662845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris DP4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008751 |
|---|
| Strand | - |
|---|
| Start bp | 885049 |
|---|
| End bp | 886698 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639818936 |
|---|
| Product | nickel-dependent hydrogenase, large subunit |
|---|
| Protein accession | YP_966168 |
|---|
| Protein GI | 120601768 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.338951 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCTA AAGCATTCAC AGGGCCCATC ACCATAGACC CCATCACGCG CATCGAGGGG
CACCTCAAGA TCGATGTGGA TGTCAAGGAC GGCAAGGTCG CCAACGCATG GTCCAGCGCC
CAGTTGTTCA GAGGCATCGA GATGATCGTT CAGGGACGTC CGCCGGAAGA CGTGCACCAC
TATGTGCAGC GTGTCTGCGG CGTATGCACC ACGACACATG CGCTGACCAG CATCCGCGCC
GTCGAGAACG CCATCGGCCT CAAGCCTCCG CCAGCGGCAG AACTCGTGCG GCTGCTCATC
CTGTCGACCC TCGACGTGCA CGACCACCTC GTGCACTTCT ACCACCTGCA CTCGCTCGAC
TTCTTCGACA TGGCAGATGC CCTGAAGGCG GATGCCGTGG CTGCGGCGAA GCTCGCGAGC
GAGGTCTCGG GACGGGAGAC ACAGCCCGGC GACTTCTTCA TCGTGCAGGG GCGGCTCAAG
AAGTTCGTAG AGGGTGGGCA ACTGGGGTGG CTCAATCACG CCTATTCCCT CGGTGGGCAT
CCGGCGTATC GCCTCTCGCC GGAAGAGAAC CTCATCCTTG CCACCAACTA TCTCGAAGCG
CTCAAGGTAC AGATGAAGAT AGCACGGGCC ATGGCCATCT TCAGCGGCAA GAACCCCCAC
GCCCAGACCA TGCAGGTAGG GGGTGTCACC TGCTACGAAA GTCTCCGGCC TGAACGTATC
ACGGAATTCA GGGCCCTCTA TGAGGACACG CGCGCCTTCA TCAATCACAA CTACGTGGGC
GACCTCACCA TACTCGGCAA ACGCTATCCC GAAGTGGCGA CGTACGGGCG CACTACGAAC
TTCATGGACT TCTCCGACTT CTTCGACCCT GAGACGGGCA AGGCACCCTT CTTCAGAGGC
GGGGTGATGT GGGCGCGCGA CTTCAAGAAG GTCGAGGAGG TGAACCCGGA ACAGATAGTG
GAGCATGTGG CCCACAGCTG GTATGTCAAA GGAGCCCCCA AGCCCCCGTA TGACGGCGTC
ACAGCCCCGG ACTACACGGG CTACGACCAG AACGACCGGT ACTCGTGGGC CAAGGCCCCG
CGTTACAGGG GCGAACCTGT TGAAACAGGC CCTCTTGCAC GACGGATGCT CGCCTACGCA
CGGGGCGAAC AGGAGACCGT CCGCCGCATG GATGCATGGC TCGCAGCCTG CGGGCTGAAC
AAGGAGAACA TGTTCTCCAC CATGGGGCGC ACTGCCGCCC GGATGGTGGA ATGCGTGGTG
CTCATGAACC GTATCGAAGG TTGGCTCAAC GACCTTGAAG CACGCATCAA GGCTGGTCCG
GTCGAGATAT TCAAGCCATG GAAGATGCCC GACAAGGCCA AGGGCGTGGG CTTCTGTGCC
GTGACGCGAG GCGGCCTCTC ACACTGGATA CGCATCGAGG GCGGAAAGAC GGCGAACTAC
CAGATGGTGG TGCCAAGCAC ATGGAACCTC GGCCCCCGGT GCGAGGCCGG CAAGCCCTCT
CCCGTCGAGG AGTCGCTCAT GGGCAACCCT GTACTGGATG CCGAGCGCCC GGTGGAGGTC
TTGCGGACCG TCCACTCGTT CGACCCCTGC CTTGCCTGTG CCGTCCACCT CATTCATGCG
GGCGACAGAC AGGTCATACG CGTCCTCTAG
|
|---|
| Protein sequence | MTAKAFTGPI TIDPITRIEG HLKIDVDVKD GKVANAWSSA QLFRGIEMIV QGRPPEDVHH
YVQRVCGVCT TTHALTSIRA VENAIGLKPP PAAELVRLLI LSTLDVHDHL VHFYHLHSLD
FFDMADALKA DAVAAAKLAS EVSGRETQPG DFFIVQGRLK KFVEGGQLGW LNHAYSLGGH
PAYRLSPEEN LILATNYLEA LKVQMKIARA MAIFSGKNPH AQTMQVGGVT CYESLRPERI
TEFRALYEDT RAFINHNYVG DLTILGKRYP EVATYGRTTN FMDFSDFFDP ETGKAPFFRG
GVMWARDFKK VEEVNPEQIV EHVAHSWYVK GAPKPPYDGV TAPDYTGYDQ NDRYSWAKAP
RYRGEPVETG PLARRMLAYA RGEQETVRRM DAWLAACGLN KENMFSTMGR TAARMVECVV
LMNRIEGWLN DLEARIKAGP VEIFKPWKMP DKAKGVGFCA VTRGGLSHWI RIEGGKTANY
QMVVPSTWNL GPRCEAGKPS PVEESLMGNP VLDAERPVEV LRTVHSFDPC LACAVHLIHA
GDRQVIRVL
|
|---|
| |