| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3147 |
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| Symbol | |
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| ID | 5540645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4078132 |
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| End bp | 4079844 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640895268 |
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| Product | nickel-dependent hydrogenase large subunit |
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| Protein accession | YP_001433219 |
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| Protein GI | 156743090 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAAA TTGCTATTGA TCCGATCACC CGCATTGAAG GACATCTGCG TATCGAGGCG
CAGATCGAGC GCGGGCGCGT AGTGGATGCC TGGAGCAGTT CGACGATGTT CCGCGGCATG
GAGATCGTCC TGCGCGGACG CGATCCGCGC GACGCCTGGG TGTTTGCGCA GCGCATCTGC
GGCGTCTGCA CGACCGTCCA TGCGCTTGCA TCGGTGCGCG CCGTTGAAAA CGCGCTCGAT
ATTCAGATAC CCGACAATGC CCGGCTTATC CGCAACATCA TCGCAGGCGC CCAATATGTG
CAAGACCATG TCATCCACTT CTACCACCTG CACGCCTTAG ACTGGGTAGA TATCGTGAGT
GCGCTCAAGG CCGATCCGGT CAAAACATCG GAACTGGCGC AGAGCATTTC CGACTGGCCC
AAATCGTCGC CCGCCTACTT CAAGGGTGTC CAGGACCGAT TGCAAAAGTT CGTTGACAGC
GGGCAATTGG GGATTTTTGG CAACGCCTAT TGGGGGCATC CGGCGTATGC GCTGCCGCCT
GAAGCCAATC TGATGGCCGT GGCGCACTAC CTGGAAGCGC TGGAGTGGCA GAAGGACGTC
ATCAGAATTC ACGCGATTCT GGGCGGTAAG AATCCCCACC CGCAGACATA TCTCGTCGGC
GGGATGGCAG CGCCGCTCGA CCCGAATGCG CAGCAGGCGA TCAACACCAT CCGCATCGCG
CAGTTGAAAA TGCTCGCCGA TCAGGTGCGC ACGTTTGTGG GCAAGGTCTA CATTCCCGAT
ATTCTGGCTA TCGCATCATT CTACAAAGAC TGGGCAGGGC TTGGCGCTGG CGTGGGCAAC
TATCTGTCGT ATGGCGACTT CCCGGCTGCG AAAGATGGCA ACGTCGCCAG TTACTGGCTG
CCGCGCGGTG TGATTGTGAA CAAGAATATC GACCAGAAGC CGCAACCGGT GAACCACGAG
CGCGTGACCG AATATGTTGC GCATTCCTGG TTCCGCTATG GCGAGGGCGA TCAGCAGGCG
CTCCATCCCT GGAAAGGTGA GACCATCCCG AATTACACCG GTCCTCAACC GCCTTACGAC
TGGCTCAACA CCGATGGCAA ATATTCCTGG CTCAAAACGC CGCGCTACGA CGACATGCCG
ATGGAAGTCG GTCCATTGGC GCGTATGCTC GTCGGATACG CTTCCGGTCA GCAACGCATT
CAGGAGTTGG TCAACGCTGC ACTCAAACAG TTGGGAGTTG GTCCGGCGGC GCTCTTCTCG
ACGCTGGGGC GCACAGCGGC GCGCGCCATC GAAACCGCGT TGATCGCCGA ACTGTTGCCG
GGATGGATCG ACGAACTGGC GGCAAATATG GCGGCCGGCA ACCTGGTAGT TCACAACAGC
GCCAAATGGA GTCCGGCGAA CTGGCCCCAG GAAGCGGTTG GTTGGGGATC GATGGAAGCG
CCGCGCGGCT CGCTTGGGCA CTGGGTGCGG ATCAGAGATG GCAAGATCGT CAACTATCAA
GCAGTGGTTC CGACGACGTG GAACGGCTCG CCACGTGATG CGCGCGATGT GCGCGGACCT
TACGAAGCCG CACTGATCGA CACGCCGATT GCCGACCCGG AGCAGCCGAT TGAAATCCTG
CGCACCATTC ATTCATTCGA CCCGTGCATG GCGTGCGCGG TTCACCTGGT GGATGCCCGT
GGCATTGAGA TTACCCGCGT CCGGGTGCAG TGA
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| Protein sequence | MAKIAIDPIT RIEGHLRIEA QIERGRVVDA WSSSTMFRGM EIVLRGRDPR DAWVFAQRIC
GVCTTVHALA SVRAVENALD IQIPDNARLI RNIIAGAQYV QDHVIHFYHL HALDWVDIVS
ALKADPVKTS ELAQSISDWP KSSPAYFKGV QDRLQKFVDS GQLGIFGNAY WGHPAYALPP
EANLMAVAHY LEALEWQKDV IRIHAILGGK NPHPQTYLVG GMAAPLDPNA QQAINTIRIA
QLKMLADQVR TFVGKVYIPD ILAIASFYKD WAGLGAGVGN YLSYGDFPAA KDGNVASYWL
PRGVIVNKNI DQKPQPVNHE RVTEYVAHSW FRYGEGDQQA LHPWKGETIP NYTGPQPPYD
WLNTDGKYSW LKTPRYDDMP MEVGPLARML VGYASGQQRI QELVNAALKQ LGVGPAALFS
TLGRTAARAI ETALIAELLP GWIDELAANM AAGNLVVHNS AKWSPANWPQ EAVGWGSMEA
PRGSLGHWVR IRDGKIVNYQ AVVPTTWNGS PRDARDVRGP YEAALIDTPI ADPEQPIEIL
RTIHSFDPCM ACAVHLVDAR GIEITRVRVQ
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