| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1997 |
|---|
| Symbol | hupL |
|---|
| ID | 5152108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 2064383 |
|---|
| End bp | 2066173 |
|---|
| Gene Length | 1791 bp |
|---|
| Protein Length | 596 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640556938 |
|---|
| Product | uptake hydrogenase large subunit precursor |
|---|
| Protein accession | YP_001238094 |
|---|
| Protein GI | 148253509 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCATCC AGACTCCCAA CGGCTTCAAT CTCGACAATT CCGGCAAGCG CGTCGTCGTC
GATCCGCTCA CGCGCATCGA GGGACATCTG CGCGTCGAGG TGAATGTCGA CTCCAACAAT
GTCATCCGCA ACGCAGTGTC GACCGGCACG ATGTGGCGCG GCATCGAGAC TATCCTGCGC
GGCCGCGATC CGCGCGACGC CTGGGCCTTC ACCGAGCGGA TCTGCGGCGT CTGCACCGGC
ACCCACGCGC TGACCTCGGT GCGCGCGGTC GAGAATGCAC TGGTGATCAT GATCCCCGAC
AACGCCAATT CGATCCGCAA CATCATGCAG CTCTGCCTGC AGGTGCACGA CCATCTCGTG
CACTTCTATC ACCTGCATGC GCTGGATTGG GTCGACGTCG TCTCGGCGCT CAAGGCCGAT
CCGAAGGCAA CCTCTGCGCT GGCGCAGTCG ATCTCGGACT GGCCGCTGTC GTCGCCGGGC
TATTTCAAGG ACCTGCAGAT CCGGCTGACG AAGTTCGTCG AGTCCGGCCA GCTCGGTCCG
TTCAAGAACG CCTATTGGGG CCACGCGGCC TACAAGCTGC CGCCCGAAGC GAACCTGATG
GCGGTCGCGC ATTATCTGGA GGCGCTCGAC TTCCAGAAGG AGATCGTCAA GATCCACACC
ATCTATGGCG GCAAGAATCC GCATCCGAAC TGGCTGGTCG GCGGCGTGCC CTGCGCCATC
AATGTCGACG GGACCGGTGC GGTCGGCGCC ATCAATATGG AGCGGCTGAA TCTCGTTTCC
TCCATCATCG ACCGCTCGAT CGAGTTCGTG CAGAAGGTCT ATCTGCCCGA CGTCGTCGCC
ATCGGCTCGT TCTACAAGGA CTGGCTCTAT GGCGGTGGCC TCTCGGGCAA GAGCGTGATG
TCCTATGGCG ACATTCCGGA GAACGCCAAC GACTATTCGG CCAAGAACCT CAAGCTGCCG
CGCGGCGTGA TCCTCAACGG CAATCTCAAC GAGATCCTGC CGATCGATCA CGGCGACCCC
GAGCAGATCC AGGAGTTCGT CACCCACTCC TGGTACAAAT ATCCCGACGA GAGCAAGGGG
CTGCATCCCT GGGACGGCGT CACCGAGCCG AACTATCAGC TCGGCCCCAA TGCCAAGGGC
ACCAAGACCG ACATCAAGGA GCTCGACGAG GGCGGCAAGT ACTCCTGGAT CAAGGCGCCG
CGCTGGCGCG GCAACGCGGT CGAGGTCGGC CCCCTGGCGC GCTACATCAT CGGCTATGCG
CAGAACAGGC CGGAGTTCAA GGAGCCGACC GACAAGCTCC TGAAGGCGCT GAACCTGCCG
GTGACGGCGC TGTTCTCGAC GCTCGGTCGC ACCGCCGCGC GTGCGCTCGA ATGCGACTGG
GCCGCGACCC AGATGCGCTA CTTCCAGGAC AAGCTGGTGG CGCGCATCAA GGCCGGCGAT
TCCTCGACCG CGAACATCGA GAAGTGGAAG CCGGAGAGCT GGCCCAAGGA GGCCAAGGGC
TATGGCTTCA CCGAGGCGCC GCGCGGCGCG CTGGCGCACT GGATCAAGAT CAAGGAGACC
AGGATCGACA ACTACCAGTG CGTTGTGCCG ACCACCTGGA ACGGCTCGCC GCGTGACCCC
AAGGGCAATA TCGGCGCCTT CGAGGCGTCG CTGATGGATA CGCCGATGGC GGATCCGGAG
AAGCCGCTGG AGATCCTGCG GACGATTCAT TCGTTCGATC CGTGCCTTGC GTGCTCCACC
CACGTGATGA GCCCGGACGG CCAGGAAATG GCGACCGTCA AGGTCAGGTA G
|
|---|
| Protein sequence | MGIQTPNGFN LDNSGKRVVV DPLTRIEGHL RVEVNVDSNN VIRNAVSTGT MWRGIETILR
GRDPRDAWAF TERICGVCTG THALTSVRAV ENALVIMIPD NANSIRNIMQ LCLQVHDHLV
HFYHLHALDW VDVVSALKAD PKATSALAQS ISDWPLSSPG YFKDLQIRLT KFVESGQLGP
FKNAYWGHAA YKLPPEANLM AVAHYLEALD FQKEIVKIHT IYGGKNPHPN WLVGGVPCAI
NVDGTGAVGA INMERLNLVS SIIDRSIEFV QKVYLPDVVA IGSFYKDWLY GGGLSGKSVM
SYGDIPENAN DYSAKNLKLP RGVILNGNLN EILPIDHGDP EQIQEFVTHS WYKYPDESKG
LHPWDGVTEP NYQLGPNAKG TKTDIKELDE GGKYSWIKAP RWRGNAVEVG PLARYIIGYA
QNRPEFKEPT DKLLKALNLP VTALFSTLGR TAARALECDW AATQMRYFQD KLVARIKAGD
SSTANIEKWK PESWPKEAKG YGFTEAPRGA LAHWIKIKET RIDNYQCVVP TTWNGSPRDP
KGNIGAFEAS LMDTPMADPE KPLEILRTIH SFDPCLACST HVMSPDGQEM ATVKVR
|
|---|
| |