More than 300 homologs were found in PanDaTox collection
for query gene Sama_1678 on replicon NC_008700
Organism: Shewanella amazonensis SB2B



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003912  CJE1402  quinone-reactive Ni/Fe-hydrogenase, large subunit  56.32 
 
 
571 aa  663    Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2098  quinone-reactive Ni/Fe hydrogenase, large subunit  92.4 
 
 
567 aa  1095    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_1907  nickel-dependent hydrogenase, large subunit  89.4 
 
 
567 aa  1040    Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.022032 
 
 
-
 
NC_009052  Sbal_1888  nickel-dependent hydrogenase large subunit  92.4 
 
 
567 aa  1079    Shewanella baltica OS155  Bacteria  normal  0.261784  n/a   
 
 
-
 
NC_007575  Suden_1435  nickel-dependent hydrogenase, large subunit  61.75 
 
 
577 aa  754    Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.611833  n/a   
 
 
-
 
NC_009802  CCC13826_0100  aminodeoxychorismate lyase  57.92 
 
 
572 aa  699    Campylobacter concisus 13826  Bacteria  normal  0.0667384  n/a   
 
 
-
 
NC_009092  Shew_1764  nickel-dependent hydrogenase, large subunit  90.28 
 
 
568 aa  1045    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2089  nickel-dependent hydrogenase, large subunit  92.23 
 
 
567 aa  1096    Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1921  nickel-dependent hydrogenase large subunit  92.23 
 
 
567 aa  1080    Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1821  nickel-dependent hydrogenase, large subunit  92.58 
 
 
567 aa  1095    Shewanella sp. MR-4  Bacteria  normal  0.545248  normal 
 
 
-
 
NC_008322  Shewmr7_2156  nickel-dependent hydrogenase, large subunit  92.76 
 
 
567 aa  1096    Shewanella sp. MR-7  Bacteria  normal  0.352792  normal  0.370314 
 
 
-
 
NC_008345  Sfri_2104  nickel-dependent hydrogenase, large subunit  84.48 
 
 
567 aa  1016    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_0459  quinone-reactive Ni/Fe-hydrogenase, large subunit  56.29 
 
 
571 aa  661    Campylobacter jejuni subsp. doylei 269.97  Bacteria  unclonable  0.000000000643457  n/a   
 
 
-
 
NC_009665  Shew185_1914  nickel-dependent hydrogenase large subunit  92.05 
 
 
567 aa  1078    Shewanella baltica OS185  Bacteria  normal  0.392356  n/a   
 
 
-
 
NC_008577  Shewana3_1879  nickel-dependent hydrogenase, large subunit  92.76 
 
 
567 aa  1096    Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009715  CCV52592_1902  quinone-reactive Ni/Fe-hydrogenase large chain  57.72 
 
 
572 aa  690    Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_0939  quinone-reactive Ni/Fe-hydrogenase large chain  58.1 
 
 
573 aa  717    Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.0992433  n/a   
 
 
-
 
NC_009714  CHAB381_0862  quinone-reactive Ni/Fe-hydrogenase large chain  56.92 
 
 
573 aa  692    Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2032  nickel-dependent hydrogenase large subunit  88.71 
 
 
567 aa  1062    Shewanella pealeana ATCC 700345  Bacteria  normal  0.0709763  n/a   
 
 
-
 
NC_008700  Sama_1678  hydrogenase large chain  100 
 
 
567 aa  1174    Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_012039  Cla_0713  Ni/Fe-hydrogenase, large subunit  59.12 
 
 
571 aa  695    Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_1105  nickel-dependent hydrogenase large subunit  58.72 
 
 
584 aa  718    Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_1282  quinone-reactive Ni/Fe-hydrogenase, large subunit  56.67 
 
 
571 aa  664    Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00216082  n/a   
 
 
-
 
NC_011663  Sbal223_2405  nickel-dependent hydrogenase large subunit  92.23 
 
 
567 aa  1080    Shewanella baltica OS223  Bacteria  normal  0.286384  hitchhiker  0.000502851 
 
 
-
 
NC_007520  Tcr_2037  nickel-dependent hydrogenase, large subunit  48.41 
 
 
568 aa  564  1.0000000000000001e-159  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2138  periplasmic (NiFe) hydrogenase, large subunit, isozyme 1  48.24 
 
 
568 aa  519  1e-146  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2952  nickel-dependent hydrogenase, large subunit  47.43 
 
 
546 aa  520  1e-146  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.437472 
 
 
-
 
NC_013223  Dret_0266  nickel-dependent hydrogenase large subunit  47.6 
 
 
566 aa  518  1.0000000000000001e-145  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.322067  normal 
 
 
-
 
NC_002939  GSU0122  nickel-dependent hydrogenase, large subunit  47.38 
 
 
564 aa  510  1e-143  Geobacter sulfurreducens PCA  Bacteria  normal  0.254382  n/a   
 
 
-
 
NC_012918  GM21_1126  Cytochrome-c3 hydrogenase  45.9 
 
 
559 aa  510  1e-143  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_3136  nickel-dependent hydrogenase large subunit  45.72 
 
 
559 aa  508  9.999999999999999e-143  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0544  nickel-dependent hydrogenase, large subunit  46.42 
 
 
566 aa  506  9.999999999999999e-143  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1946  nickel-dependent hydrogenase, large subunit  45.66 
 
 
560 aa  502  1e-141  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0785  nickel-dependent hydrogenase, large subunit  45.14 
 
 
560 aa  499  1e-140  Geobacter sulfurreducens PCA  Bacteria  normal  0.433799  n/a   
 
 
-
 
NC_007517  Gmet_3331  nickel-dependent hydrogenase, large subunit  45.72 
 
 
566 aa  497  1e-139  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1163  nickel-dependent hydrogenase, large subunit  45.98 
 
 
597 aa  496  1e-139  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.28682  normal 
 
 
-
 
NC_002977  MCA0165  nickel-iron hydrogenase, large subunit  44.43 
 
 
597 aa  493  9.999999999999999e-139  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0497936  n/a   
 
 
-
 
NC_013173  Dbac_0766  nickel-dependent hydrogenase large subunit  45.31 
 
 
569 aa  493  9.999999999999999e-139  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02870  hydrogenase 2, large subunit  44.94 
 
 
567 aa  490  1e-137  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0702  nickel-dependent hydrogenase large subunit  44.94 
 
 
567 aa  490  1e-137  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0699  hydrogenase 2 large subunit  44.94 
 
 
567 aa  489  1e-137  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_02819  hypothetical protein  44.94 
 
 
567 aa  490  1e-137  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4306  hydrogenase 2 large subunit  44.94 
 
 
567 aa  490  1e-137  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.228665  normal 
 
 
-
 
NC_010658  SbBS512_E3421  hydrogenase 2 large subunit  44.94 
 
 
567 aa  490  1e-137  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3174  hydrogenase 2 large subunit  44.94 
 
 
567 aa  490  1e-137  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_3280  hydrogenase 2 large subunit  44.94 
 
 
567 aa  490  1e-137  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_3463  hydrogenase 2 large subunit  44.94 
 
 
567 aa  490  1e-137  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0270  nickel-dependent hydrogenase large subunit  45.58 
 
 
567 aa  490  1e-137  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.11146 
 
 
-
 
NC_009485  BBta_1997  uptake hydrogenase large subunit precursor  45.3 
 
 
596 aa  487  1e-136  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C1709  [Ni/Fe] hydrogenase large subunit  43.24 
 
 
600 aa  488  1e-136  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3771  nickel-dependent hydrogenase, large subunit  45.13 
 
 
597 aa  487  1e-136  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.292608  normal  0.910106 
 
 
-
 
NC_011094  SeSA_A1642  [Ni/Fe] hydrogenase, large subunit  43.24 
 
 
600 aa  488  1e-136  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.251142  normal 
 
 
-
 
NC_011149  SeAg_B1633  [Ni/Fe] hydrogenase, large subunit  43.24 
 
 
600 aa  488  1e-136  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A1798  [Ni/Fe] hydrogenase, large subunit  43.24 
 
 
600 aa  488  1e-136  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.570579  normal 
 
 
-
 
NC_008751  Dvul_1245  nickel-dependent hydrogenase, large subunit  44.97 
 
 
566 aa  486  1e-136  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.11159 
 
 
-
 
NC_011080  SNSL254_A1650  [Ni/Fe] hydrogenase large subunit  43.24 
 
 
600 aa  488  1e-136  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_0147  nickel-dependent hydrogenase large subunit  44.15 
 
 
559 aa  484  1e-135  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0854  nickel-dependent hydrogenase large subunit  43.2 
 
 
572 aa  483  1e-135  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.255543 
 
 
-
 
NC_009523  RoseRS_2320  nickel-dependent hydrogenase, large subunit  43.47 
 
 
570 aa  484  1e-135  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_2028  nickel-dependent hydrogenase, large subunit  45.19 
 
 
595 aa  483  1e-135  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_009429  Rsph17025_3375  hypothetical protein  43.74 
 
 
596 aa  482  1e-135  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.281049  normal 
 
 
-
 
NC_009483  Gura_0873  nickel-dependent hydrogenase, large subunit  43.87 
 
 
569 aa  483  1e-135  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_1592  nickel-dependent hydrogenase large subunit  43.25 
 
 
572 aa  483  1e-135  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.663154  normal 
 
 
-
 
NC_010814  Glov_2055  nickel-dependent hydrogenase large subunit  45.31 
 
 
566 aa  484  1e-135  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1155  nickel-dependent hydrogenase large subunit  44.35 
 
 
597 aa  484  1e-135  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.295857  n/a   
 
 
-
 
NC_011205  SeD_A3495  hydrogenase 2 large subunit  43.84 
 
 
567 aa  480  1e-134  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.233634  normal 
 
 
-
 
NC_007298  Daro_3988  nickel-dependent hydrogenase, large subunit  43.76 
 
 
598 aa  481  1e-134  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A3400  hydrogenase 2 large subunit  43.84 
 
 
567 aa  480  1e-134  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3147  nickel-dependent hydrogenase large subunit  43.45 
 
 
570 aa  481  1e-134  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009475  BBta_p0179  uptake hydrogenase large subunit  45.33 
 
 
570 aa  478  1e-134  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_011149  SeAg_B3320  hydrogenase 2 large subunit  43.84 
 
 
567 aa  479  1e-134  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.118706  n/a   
 
 
-
 
NC_011083  SeHA_C3394  hydrogenase 2 large subunit  43.84 
 
 
567 aa  480  1e-134  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.571998 
 
 
-
 
NC_011094  SeSA_A3329  hydrogenase 2 large subunit  43.84 
 
 
567 aa  480  1e-134  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0496  hydrogenase protein large subunit  43.74 
 
 
596 aa  476  1e-133  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2531  hydrogenase 2 large subunit  44.79 
 
 
568 aa  476  1e-133  Dickeya dadantii Ech703  Bacteria  normal  0.597514  n/a   
 
 
-
 
NC_012912  Dd1591_1413  hydrogenase 2 large subunit  44.79 
 
 
568 aa  476  1e-133  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3404  nickel-dependent hydrogenase large subunit  43.81 
 
 
573 aa  476  1e-133  Frankia sp. EAN1pec  Bacteria  normal  0.37903  normal 
 
 
-
 
NC_009049  Rsph17029_2147  nickel-dependent hydrogenase, large subunit  43.74 
 
 
596 aa  476  1e-133  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0605986  normal  0.266797 
 
 
-
 
NC_011830  Dhaf_3368  nickel-dependent hydrogenase large subunit  44.25 
 
 
570 aa  474  1e-132  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_3286  [Ni/Fe] hydrogenase, large subunit  44.8 
 
 
585 aa  474  1e-132  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1861  nickel-dependent hydrogenase large subunit  42.98 
 
 
572 aa  473  1e-132  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2884  nickel-dependent hydrogenase large subunit  44.8 
 
 
585 aa  474  1e-132  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.308731  normal 
 
 
-
 
NC_007973  Rmet_1297  nickel-dependent hydrogenase, large subunit  43.82 
 
 
619 aa  473  1e-132  Cupriavidus metallidurans CH34  Bacteria  normal  0.0139093  normal 
 
 
-
 
NC_008687  Pden_3098  nickel-dependent hydrogenase, large subunit  43.4 
 
 
597 aa  474  1e-132  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_0337  nickel-dependent hydrogenase, large subunit  44.25 
 
 
598 aa  471  1.0000000000000001e-131  Acidiphilium cryptum JF-5  Bacteria  normal  0.0168031  n/a   
 
 
-
 
NC_007643  Rru_A1162  nickel-dependent hydrogenase, large subunit  42.98 
 
 
596 aa  469  1.0000000000000001e-131  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.122791  n/a   
 
 
-
 
NC_008576  Mmc1_2503  nickel-dependent hydrogenase, large subunit  43.81 
 
 
567 aa  469  1.0000000000000001e-131  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.153272 
 
 
-
 
NC_010627  Bphy_7264  nickel-dependent hydrogenase large subunit  42.11 
 
 
596 aa  471  1.0000000000000001e-131  Burkholderia phymatum STM815  Bacteria  normal  normal  0.340015 
 
 
-
 
NC_011901  Tgr7_1266  Ni-Fe hydrogenase large chain  45.01 
 
 
583 aa  471  1.0000000000000001e-131  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3907  nickel-dependent hydrogenase, large subunit  44.48 
 
 
578 aa  467  9.999999999999999e-131  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_1447  hydrogenase large chain  42.51 
 
 
572 aa  466  9.999999999999999e-131  Chlorobium luteolum DSM 273  Bacteria  normal  0.333249  normal 
 
 
-
 
NC_008009  Acid345_4240  nickel-dependent hydrogenase, large subunit  43.52 
 
 
563 aa  466  9.999999999999999e-131  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008639  Cpha266_0973  nickel-dependent hydrogenase, large subunit  43.15 
 
 
572 aa  468  9.999999999999999e-131  Chlorobium phaeobacteroides DSM 266  Bacteria  decreased coverage  0.000120136  n/a   
 
 
-
 
NC_009675  Anae109_3520  nickel-dependent hydrogenase large subunit  43.72 
 
 
567 aa  462  1e-129  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_0856  nickel-dependent hydrogenase large subunit  42.44 
 
 
572 aa  465  1e-129  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3971  nickel-dependent hydrogenase, large subunit  44.46 
 
 
570 aa  460  9.999999999999999e-129  Dechloromonas aromatica RCB  Bacteria  normal  0.533836  normal 
 
 
-
 
NC_007908  Rfer_4091  nickel-dependent hydrogenase, large subunit  45.57 
 
 
568 aa  462  9.999999999999999e-129  Rhodoferax ferrireducens T118  Bacteria  normal  0.0995107  n/a   
 
 
-
 
NC_011883  Ddes_1038  nickel-dependent hydrogenase large subunit  43.54 
 
 
558 aa  459  9.999999999999999e-129  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.368471  n/a   
 
 
-
 
NC_009720  Xaut_2174  nickel-dependent hydrogenase large subunit  43.65 
 
 
604 aa  457  1e-127  Xanthobacter autotrophicus Py2  Bacteria  hitchhiker  0.0021467  normal  0.160198 
 
 
-
 
NC_009675  Anae109_0523  nickel-dependent hydrogenase large subunit  43.97 
 
 
578 aa  456  1e-127  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
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