Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rru_A1162 |
Symbol | |
ID | 3834672 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodospirillum rubrum ATCC 11170 |
Kingdom | Bacteria |
Replicon accession | NC_007643 |
Strand | + |
Start bp | 1379541 |
End bp | 1381331 |
Gene Length | 1791 bp |
Protein Length | 596 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637825251 |
Product | nickel-dependent hydrogenase, large subunit |
Protein accession | YP_426250 |
Protein GI | 83592498 |
COG category | [C] Energy production and conversion |
COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.122791 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGTGA CGACGCCCAA CGGCTTCACA TTGAACGATG CCGGCCGCCG CGTGGTGGTC GATCCGGTGA CCCGCATCGA GGGTCATCTG CGCATCGAGC TCAATGTCGA CGAGGCCAAT GTCATCCGCA ACGCCGTGTC GACGGGAACG ATGTGGCGCG GCATCGAACT GATCCTCAAG GGCCGCGATC CGCGCGACGC CTGGGCCTTT ACCCAGCGCA TCTGCGGGGT GTGCACGGGA ACCCACGCCC TGACCAGCGT GCGTGCCATC GAAAACACCC TTGGCATCCA GATCCCCGAA AACGCCAATT CCATCCGCAA CATCATGCAG CTTTGCCTGC AGGTGCATGA CCATCTGGTT CACTTCTATC ACCTGCATGC CCTGGATTGG GTCGATGTGG TTTCGGCGCT TTCGGCCGAT CCGAAAGCCA CCAGCGCCCT GGCGCAAAGC CTGTCGCCCT GGCCGCTGTC CTCGCCCGGC TATTTTAGCG ACATCAAGGC CAAGCTGACC CGTTTCGTCG AATCCGGGCA GTTGGGGCCG TTCAAGAACG GCTATTGGGG CCACCCGGCC TATCGCCTGC CGCCCGAAGC CAATCTGATG GCGGTCGCCC ATTATCTGGA GGCGCTGGAT TTCCAGAAGG AGATCGTCAA GATCCATGCG GTCTTCGGCG GCAAGAACCC CCATCCCAAC TGGCTGGTCG GCGGCGTGCC CTGCGCCATC AACCTTGATG GCGCCGGCGC CGTCGGCGCA GTCAATATCG AGCGGCTCAA TCTGGTGTCG TCGATCATCG ACCGCGCCAC CACCTTCGTC GAACAGGTCT ATCTGCCCGA TCTGATCGCC ATCGCCGGCT TCTATAAGGA CTGGCAGTAT GGCGGCGGCC TCAGTTCCAC CTCGGTGCTG GCCTATGGCG ATATCCCCGA TCGCGCCAAT GATTATTCGC CTTCGAACCT TTTGATGCCG AGCGGGGCGA TCATCAATGG CGAACTGACC CGCATCCATC CGGTTGATCT GACCGACCCC GAGCAGATCC AGGAGTTCGT TTCCCATTCC TGGTACCGCT ATGGCGACGA GGCCAAGGGA TTGCACCCCT GGGATGGCGT CACCGAAAGC CACTTCGAGC TGGGGCCGCG CAGCAAGGTC GAAAACCGGC GCATCGAGAC CCTCGATGAA AGCGCCAAAT ACAGCTACCT CAAGGCGCCG CGCTGGCGGG GCCATGCCAT GGAGGTCGGG CCGCTCGCCC GCTATATCCT GGGCTATGCC CAGGGCAATC CCGAGTTCAA GGAGCCGACC GAGGCCCTGT TGCGCCAGCT TGACCTGCCG GTCGGCGCCT TGTTCTCCAC CCTGGGGCGG ACGGCGGCGC GCGGCCTGGA ATGCCAATGG GCGGCGGGCA AGCTGCGCTA TTTCTTCGAT AAACTGATGG CCAACCTCAA GGCCGGCGAT CTCAACACCG CCAATACGAC GAAATGGGCG CCCGCCACTT GGCCAGCTTC GGCCAAAGGT GTGGGCTTTA CCGAAGCGCC GCGCGGCGCC CTGGCCCATT GGGTCCAGAT CGAGGCGGGC AAGATCGCCA ATTACCAATG CGTGGTGCCG ACCACCTGGA ACGGCAGTCC GCGCGATCCG GCGGGGGCGA TCGGCGCCTT CGAGGCGGCC TTGCTCGATA CGCCGCTGGC CGATCCCCAA CAGCCGCTTG AAGTGCTGCG GACCCTGCAC AGCTTTGACC CCTGCCTCGC CTGTTCGACC CATATCCTGA CGCCCGAGGG CGGCGAGGCG ATTTCGGTGA CGGTGCGCTA A
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Protein sequence | MSVTTPNGFT LNDAGRRVVV DPVTRIEGHL RIELNVDEAN VIRNAVSTGT MWRGIELILK GRDPRDAWAF TQRICGVCTG THALTSVRAI ENTLGIQIPE NANSIRNIMQ LCLQVHDHLV HFYHLHALDW VDVVSALSAD PKATSALAQS LSPWPLSSPG YFSDIKAKLT RFVESGQLGP FKNGYWGHPA YRLPPEANLM AVAHYLEALD FQKEIVKIHA VFGGKNPHPN WLVGGVPCAI NLDGAGAVGA VNIERLNLVS SIIDRATTFV EQVYLPDLIA IAGFYKDWQY GGGLSSTSVL AYGDIPDRAN DYSPSNLLMP SGAIINGELT RIHPVDLTDP EQIQEFVSHS WYRYGDEAKG LHPWDGVTES HFELGPRSKV ENRRIETLDE SAKYSYLKAP RWRGHAMEVG PLARYILGYA QGNPEFKEPT EALLRQLDLP VGALFSTLGR TAARGLECQW AAGKLRYFFD KLMANLKAGD LNTANTTKWA PATWPASAKG VGFTEAPRGA LAHWVQIEAG KIANYQCVVP TTWNGSPRDP AGAIGAFEAA LLDTPLADPQ QPLEVLRTLH SFDPCLACST HILTPEGGEA ISVTVR
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