More than 300 homologs were found in PanDaTox collection
for query gene Caul_2088 on replicon NC_010338
Organism: Caulobacter sp. K31



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010338  Caul_2088  LuxR family transcriptional regulator  100 
 
 
77 aa  156  1e-37  Caulobacter sp. K31  Bacteria  normal  0.33427  normal 
 
 
-
 
NC_010682  Rpic_0460  transcriptional regulator, LuxR family  55.38 
 
 
253 aa  73.9  0.0000000000007  Ralstonia pickettii 12J  Bacteria  normal  normal  0.343765 
 
 
-
 
NC_010338  Caul_2120  LuxR family transcriptional regulator  53.85 
 
 
244 aa  72.8  0.000000000001  Caulobacter sp. K31  Bacteria  normal  0.0535979  normal  0.194929 
 
 
-
 
NC_008228  Patl_0359  LuxR family transcriptional regulator  50.79 
 
 
248 aa  65.9  0.0000000002  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.870907  n/a   
 
 
-
 
NC_008391  Bamb_4116  LuxR family transcriptional regulator  51.47 
 
 
239 aa  63.9  0.0000000007  Burkholderia ambifaria AMMD  Bacteria  normal  0.0201758  hitchhiker  0.00877352 
 
 
-
 
NC_006349  BMAA1443  ATP-dependent transcription regulator LuxR  52.46 
 
 
238 aa  61.2  0.000000004  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_4720  putative PAS/PAC sensor protein  49.18 
 
 
222 aa  61.2  0.000000004  Sphingomonas wittichii RW1  Bacteria  normal  0.104323  normal 
 
 
-
 
NC_008835  BMA10229_2171  ATP-dependent transcription regulator LuxR  52.46 
 
 
238 aa  61.2  0.000000004  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0944598  n/a   
 
 
-
 
NC_009075  BURPS668_A0542  ATP-dependent transcription regulator LuxR  52.46 
 
 
238 aa  61.2  0.000000004  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0444  ATP-dependent transcription regulator LuxR  52.46 
 
 
238 aa  61.2  0.000000004  Burkholderia pseudomallei 1106a  Bacteria  normal  0.853961  n/a   
 
 
-
 
NC_009079  BMA10247_A0854  ATP-dependent transcription regulator LuxR  52.46 
 
 
238 aa  61.2  0.000000004  Burkholderia mallei NCTC 10247  Bacteria  normal  0.777865  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1863  ATP-dependent transcription regulator LuxR  52.46 
 
 
394 aa  60.5  0.000000007  Burkholderia pseudomallei 1710b  Bacteria  hitchhiker  0.00465528  n/a   
 
 
-
 
NC_013440  Hoch_3098  transcriptional regulator, LuxR family  49.18 
 
 
254 aa  60.5  0.000000007  Haliangium ochraceum DSM 14365  Bacteria  normal  0.521704  normal  0.269359 
 
 
-
 
NC_010552  BamMC406_4581  LuxR family transcriptional regulator  50 
 
 
239 aa  60.5  0.000000007  Burkholderia ambifaria MC40-6  Bacteria  hitchhiker  0.00000141763  hitchhiker  0.0000089809 
 
 
-
 
NC_007614  Nmul_A2417  LuxR family transcriptional regulator  46.88 
 
 
244 aa  60.1  0.000000009  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II2087  ATP-dependent transcription regulator LuxR  52.46 
 
 
425 aa  59.7  0.00000001  Burkholderia thailandensis E264  Bacteria  normal  0.417065  n/a   
 
 
-
 
NC_011894  Mnod_1003  transcriptional regulator, LuxR family  40.79 
 
 
245 aa  60.1  0.00000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.383688  n/a   
 
 
-
 
NC_010514  Mrad2831_6378  LuxR family transcriptional regulator  40 
 
 
248 aa  59.3  0.00000002  Methylobacterium radiotolerans JCM 2831  Bacteria  n/a    n/a   
 
 
-
 
NC_007511  Bcep18194_B1052  LuxR family transcriptional regulator  49.21 
 
 
239 aa  58.9  0.00000002  Burkholderia sp. 383  Bacteria  hitchhiker  0.00000000445716  normal  0.182523 
 
 
-
 
NC_010517  Mrad2831_6408  LuxR family transcriptional regulator  40 
 
 
248 aa  59.3  0.00000002  Methylobacterium radiotolerans JCM 2831  Bacteria  n/a    normal 
 
 
-
 
NC_008061  Bcen_3643  LuxR family transcriptional regulator  49.21 
 
 
239 aa  58.9  0.00000002  Burkholderia cenocepacia AU 1054  Bacteria  hitchhiker  0.00106494  n/a   
 
 
-
 
NC_010086  Bmul_3971  LuxR family transcriptional regulator  50.79 
 
 
239 aa  59.3  0.00000002  Burkholderia multivorans ATCC 17616  Bacteria  hitchhiker  0.000126265  normal  0.0321799 
 
 
-
 
NC_008543  Bcen2424_4724  LuxR family transcriptional regulator  49.21 
 
 
239 aa  58.9  0.00000002  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.000522863  hitchhiker  0.00659366 
 
 
-
 
NC_013422  Hneap_0963  transcriptional regulator, LuxR family  44.93 
 
 
237 aa  58.9  0.00000002  Halothiobacillus neapolitanus c2  Bacteria  normal  0.27907  n/a   
 
 
-
 
NC_010515  Bcenmc03_5576  LuxR family transcriptional regulator  49.21 
 
 
239 aa  58.9  0.00000002  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.000012464  normal  0.015154 
 
 
-
 
NC_009972  Haur_4778  two component LuxR family transcriptional regulator  45.45 
 
 
208 aa  58.5  0.00000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00000269792  n/a   
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  39.71 
 
 
228 aa  57.8  0.00000005  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2613  two component LuxR family transcriptional regulator  46.15 
 
 
207 aa  57.8  0.00000006  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4216  regulatory protein, LuxR  46.77 
 
 
254 aa  57.4  0.00000007  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008757  Pnap_4356  response regulator receiver protein  51.92 
 
 
195 aa  57  0.00000008  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.228643 
 
 
-
 
NC_004578  PSPTO_4539  transcriptional regulator, LuxR family, autoinducer-regulated  46.77 
 
 
254 aa  57  0.00000009  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  42.42 
 
 
221 aa  57  0.00000009  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_014210  Ndas_3120  two component transcriptional regulator, LuxR family  43.28 
 
 
218 aa  57  0.00000009  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.954631  normal 
 
 
-
 
NC_013131  Caci_6705  two component transcriptional regulator, LuxR family  45.16 
 
 
258 aa  56.6  0.0000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.318103  normal  0.0731204 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  44.44 
 
 
227 aa  56.6  0.0000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_008781  Pnap_3512  regulatory protein, LuxR  47.54 
 
 
222 aa  56.2  0.0000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.492486  normal 
 
 
-
 
NC_006349  BMAA1345  N-acyl homoserine lactone transcriptional regulator  47.06 
 
 
239 aa  55.8  0.0000002  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2485  BpsR  47.06 
 
 
239 aa  55.8  0.0000002  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4889  LuxR family transcriptional regulator  49.09 
 
 
235 aa  55.8  0.0000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.672367  normal 
 
 
-
 
NC_010623  Bphy_4439  LuxR family transcriptional regulator  43.08 
 
 
234 aa  55.5  0.0000002  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II1510  ATP-dependent transcription regulator LuxR  47.06 
 
 
239 aa  56.2  0.0000002  Burkholderia thailandensis E264  Bacteria  normal  0.08907  n/a   
 
 
-
 
NC_013526  Tter_2446  transcriptional regulator, LuxR family  42.42 
 
 
188 aa  55.8  0.0000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4976  two component transcriptional regulator, LuxR family  46.88 
 
 
218 aa  55.8  0.0000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.289575  normal  0.034027 
 
 
-
 
NC_013947  Snas_0625  two component transcriptional regulator, LuxR family  40.58 
 
 
216 aa  56.2  0.0000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.732521  normal 
 
 
-
 
NC_008784  BMASAVP1_0329  autoinducer-binding transcriptional regulator BpsR  47.06 
 
 
239 aa  55.8  0.0000002  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0607  autoinducer-binding transcriptional regulator BpsR  47.06 
 
 
239 aa  55.8  0.0000002  Burkholderia mallei NCTC 10229  Bacteria  normal  0.83559  n/a   
 
 
-
 
NC_010717  PXO_02209  transcriptional regulator AhyR/AsaR family  44.44 
 
 
254 aa  55.5  0.0000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0933251  n/a   
 
 
-
 
NC_009075  BURPS668_A1295  autoinducer-binding transcriptional regulator BpsR  47.06 
 
 
239 aa  55.8  0.0000002  Burkholderia pseudomallei 668  Bacteria  normal  0.312538  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1223  autoinducer-binding transcriptional regulator BpsR  47.06 
 
 
239 aa  55.8  0.0000002  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0962  autoinducer-binding transcriptional regulator BpsR  47.06 
 
 
239 aa  55.8  0.0000002  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  42.86 
 
 
226 aa  55.5  0.0000002  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  42.03 
 
 
224 aa  55.5  0.0000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010676  Bphyt_4277  transcriptional regulator, LuxR family  41.54 
 
 
234 aa  55.1  0.0000003  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.343912 
 
 
-
 
NC_007952  Bxe_B0610  LuxR family transcriptional regulator  41.54 
 
 
234 aa  55.1  0.0000003  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.317613 
 
 
-
 
NC_010338  Caul_2116  LuxR family transcriptional regulator  50.82 
 
 
249 aa  55.1  0.0000003  Caulobacter sp. K31  Bacteria  normal  0.0394214  normal  0.10898 
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  41.18 
 
 
237 aa  55.1  0.0000004  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_008463  PA14_39980  putative transcriptional regulator  42.03 
 
 
237 aa  55.1  0.0000004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3386  putative transcriptional regulator  42.03 
 
 
237 aa  55.1  0.0000004  Pseudomonas aeruginosa PA7  Bacteria  normal  0.247592  n/a   
 
 
-
 
NC_013521  Sked_16860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  38.27 
 
 
258 aa  54.7  0.0000004  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.85724  normal  0.036031 
 
 
-
 
NC_003295  RSc3287  transcriptional activator SOLR transcription regulator protein  45.59 
 
 
236 aa  54.3  0.0000005  Ralstonia solanacearum GMI1000  Bacteria  normal  0.840181  normal 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  41.27 
 
 
220 aa  54.3  0.0000005  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_007912  Sde_3500  LuxR family transcriptional regulator  49.21 
 
 
247 aa  54.3  0.0000005  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.547243 
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  42.65 
 
 
221 aa  54.7  0.0000005  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_009972  Haur_1309  two component LuxR family transcriptional regulator  44.26 
 
 
206 aa  54.3  0.0000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.000148999  n/a   
 
 
-
 
NC_013093  Amir_4051  two component transcriptional regulator, LuxR family  46.03 
 
 
225 aa  53.9  0.0000007  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00308286  n/a   
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  39.71 
 
 
237 aa  53.9  0.0000007  Frankia sp. CcI3  Bacteria  normal  0.272345  normal 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  39.13 
 
 
220 aa  53.9  0.0000007  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_013441  Gbro_1936  regulatory protein LuxR  45.45 
 
 
218 aa  53.9  0.0000007  Gordonia bronchialis DSM 43247  Bacteria  normal  0.548655  n/a   
 
 
-
 
NC_008541  Arth_4147  two component LuxR family transcriptional regulator  42.65 
 
 
218 aa  53.9  0.0000008  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_1890  transcriptional regulator LuxR family  44.62 
 
 
246 aa  53.9  0.0000008  Agrobacterium vitis S4  Bacteria  normal  0.546749  n/a   
 
 
-
 
NC_007513  Syncc9902_0287  LuxR family transcriptional regulator  43.55 
 
 
92 aa  53.5  0.0000009  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3337  two component transcriptional regulator, LuxR family  40.32 
 
 
254 aa  53.5  0.0000009  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0952095  normal  0.130531 
 
 
-
 
NC_009511  Swit_0502  regulatory protein, LuxR  44.26 
 
 
861 aa  53.5  0.000001  Sphingomonas wittichii RW1  Bacteria  normal  0.0169233  normal  0.80601 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  43.75 
 
 
225 aa  53.1  0.000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_009976  P9211_01701  LuxR family regulatory protein  43.55 
 
 
90 aa  53.1  0.000001  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_1997  autoinducer-binding transcriptional regulator, LuxR family  47.27 
 
 
237 aa  52.8  0.000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.448669  n/a   
 
 
-
 
NC_011206  Lferr_1664  transcriptional regulator, LuxR family  47.27 
 
 
237 aa  52.8  0.000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.888844 
 
 
-
 
NC_007948  Bpro_4045  LuxR family transcriptional regulator  47.54 
 
 
208 aa  53.1  0.000001  Polaromonas sp. JS666  Bacteria  normal  normal  0.370155 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  38.24 
 
 
229 aa  53.1  0.000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_5323  transcriptional regulator two component heavy metal regulatory response ZniR  39.71 
 
 
206 aa  53.1  0.000001  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.844748 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  35.38 
 
 
211 aa  53.5  0.000001  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  39.68 
 
 
224 aa  53.1  0.000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009427  Saro_3549  regulatory protein, LuxR  40.28 
 
 
255 aa  53.1  0.000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET1063  LuxR family DNA-binding response regulator  43.75 
 
 
232 aa  52.8  0.000002  Dehalococcoides ethenogenes 195  Bacteria  normal  0.815436  n/a   
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  41.94 
 
 
226 aa  52.8  0.000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_010682  Rpic_2943  two component transcriptional regulator, LuxR family  41.27 
 
 
201 aa  52.8  0.000002  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_3277  transcriptional regulator, LuxR family  40.32 
 
 
224 aa  52.8  0.000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  39.24 
 
 
224 aa  52.4  0.000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_007516  Syncc9605_2406  LuxR family transcriptional regulator  43.55 
 
 
92 aa  52.8  0.000002  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2179  LuxR family transcriptional regulator  47.54 
 
 
239 aa  52.8  0.000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1673  two component transcriptional regulator, LuxR family  41.27 
 
 
201 aa  52.8  0.000002  Ralstonia pickettii 12J  Bacteria  normal  0.619826  normal 
 
 
-
 
NC_007778  RPB_0418  LuxR family transcriptional regulator  45.45 
 
 
242 aa  52.4  0.000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_4304  response regulator receiver  40 
 
 
216 aa  52.4  0.000002  Gordonia bronchialis DSM 43247  Bacteria  normal  0.894661  n/a   
 
 
-
 
NC_004578  PSPTO_4644  transcriptional regulator, LuxR family  40.3 
 
 
77 aa  51.6  0.000003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A3395  LuxR family transcriptional regulator  45.9 
 
 
260 aa  52  0.000003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_5474  two component LuxR family transcriptional regulator  40.98 
 
 
212 aa  51.6  0.000003  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.344108  normal  0.73382 
 
 
-
 
NC_008825  Mpe_A0897  ATP-dependent transcriptional regulator-like protein protein  44.62 
 
 
933 aa  52  0.000003  Methylibium petroleiphilum PM1  Bacteria  normal  0.571021  normal 
 
 
-
 
NC_009427  Saro_3779  regulatory protein, LuxR  45.45 
 
 
248 aa  52  0.000003  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5499  response regulator receiver protein  36.23 
 
 
213 aa  51.6  0.000003  Streptosporangium roseum DSM 43021  Bacteria  decreased coverage  0.00659712  normal  0.108677 
 
 
-
 
NC_009636  Smed_2601  regulatory protein LuxR  42.62 
 
 
247 aa  52  0.000003  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
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