More than 300 homologs were found in PanDaTox collection
for query gene Caci_3509 on replicon NC_013131
Organism: Catenulispora acidiphila DSM 44928



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013131  Caci_3509  transcriptional regulator, LuxR family  100 
 
 
213 aa  422  1e-117  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0217545 
 
 
-
 
NC_013595  Sros_3760  response regulator receiver protein  41.44 
 
 
245 aa  145  4.0000000000000006e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  0.358522  normal  0.345814 
 
 
-
 
NC_014165  Tbis_1771  LuxR family transcriptional regulator  35.48 
 
 
228 aa  105  7e-22  Thermobispora bispora DSM 43833  Bacteria  normal  0.466335  normal 
 
 
-
 
NC_008148  Rxyl_2613  two component LuxR family transcriptional regulator  36.49 
 
 
207 aa  99  4e-20  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  29.9 
 
 
216 aa  93.2  3e-18  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  35.94 
 
 
234 aa  91.3  9e-18  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_25060  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  35.1 
 
 
222 aa  90.1  2e-17  Brachybacterium faecium DSM 4810  Bacteria  normal  0.444591  n/a   
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  33.33 
 
 
250 aa  89.4  4e-17  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  35.75 
 
 
225 aa  87.8  1e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_011884  Cyan7425_1929  two component transcriptional regulator, LuxR family  33.33 
 
 
209 aa  87.8  1e-16  Cyanothece sp. PCC 7425  Bacteria  normal  0.142226  normal 
 
 
-
 
NC_009620  Smed_4344  two component LuxR family transcriptional regulator  33.17 
 
 
219 aa  87.4  1e-16  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.218307 
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  34.1 
 
 
219 aa  87.8  1e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  32.41 
 
 
238 aa  87  2e-16  Frankia sp. CcI3  Bacteria  normal  normal  0.135118 
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  34.27 
 
 
207 aa  87  2e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.966789 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  32.21 
 
 
239 aa  86.3  3e-16  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  33.65 
 
 
211 aa  86.7  3e-16  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0337978 
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  32.7 
 
 
207 aa  85.9  4e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  34.42 
 
 
218 aa  84.7  8e-16  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_007951  Bxe_A1815  two component LuxR family transcriptional regulator  33.17 
 
 
213 aa  84.3  0.000000000000001  Burkholderia xenovorans LB400  Bacteria  normal  0.922696  normal  0.34679 
 
 
-
 
NC_011071  Smal_1099  two component transcriptional regulator, LuxR family  33.99 
 
 
213 aa  84.3  0.000000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_2926  two component LuxR family transcriptional regulator  32.68 
 
 
223 aa  84.7  0.000000000000001  Opitutus terrae PB90-1  Bacteria  normal  0.380263  normal 
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  34.72 
 
 
219 aa  84  0.000000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal 
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  32.43 
 
 
225 aa  83.6  0.000000000000002  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_013521  Sked_16860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  34.86 
 
 
258 aa  83.6  0.000000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.85724  normal  0.036031 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  35.05 
 
 
218 aa  83.6  0.000000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_013595  Sros_3519  response regulator receiver protein  32.71 
 
 
220 aa  83.6  0.000000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  35.41 
 
 
225 aa  83.2  0.000000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_010571  Oter_0829  two component LuxR family transcriptional regulator  33.82 
 
 
219 aa  83.2  0.000000000000003  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0121621 
 
 
-
 
NC_013131  Caci_6980  two component transcriptional regulator, LuxR family  33.33 
 
 
213 aa  83.2  0.000000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.999676 
 
 
-
 
NC_009523  RoseRS_4258  two component LuxR family transcriptional regulator  36.57 
 
 
216 aa  83.2  0.000000000000003  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4491  two component transcriptional regulator, LuxR family  33.33 
 
 
225 aa  83.2  0.000000000000003  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  33.33 
 
 
219 aa  83.2  0.000000000000003  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_008697  Noca_4902  response regulator receiver  33.96 
 
 
216 aa  82.4  0.000000000000005  Nocardioides sp. JS614  Bacteria  normal  0.443208  normal  0.676579 
 
 
-
 
NC_013441  Gbro_3238  regulatory protein LuxR  30.87 
 
 
228 aa  82  0.000000000000005  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  38.07 
 
 
230 aa  82  0.000000000000006  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  33.02 
 
 
220 aa  81.6  0.000000000000008  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal 
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  35.24 
 
 
226 aa  81.6  0.000000000000008  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  31.9 
 
 
213 aa  81.3  0.000000000000009  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  30.84 
 
 
223 aa  81.6  0.000000000000009  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_007412  Ava_C0116  two component LuxR family transcriptional regulator  29.38 
 
 
209 aa  81.3  0.00000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_4652  two component transcriptional regulator, LuxR family  33.49 
 
 
219 aa  81.3  0.00000000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0949639  normal 
 
 
-
 
NC_013093  Amir_2010  two component transcriptional regulator, LuxR family  35.92 
 
 
214 aa  80.9  0.00000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  33.49 
 
 
220 aa  81.3  0.00000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  31.16 
 
 
231 aa  80.5  0.00000000000002  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2548  two component transcriptional regulator, LuxR family  34.4 
 
 
218 aa  80.1  0.00000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  34.12 
 
 
239 aa  80.9  0.00000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_4254  two component transcriptional regulator, LuxR family  34.13 
 
 
225 aa  80.1  0.00000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.867992  normal  0.287586 
 
 
-
 
NC_012034  Athe_2627  two component transcriptional regulator, LuxR family  27.41 
 
 
211 aa  80.5  0.00000000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_3748  two component transcriptional regulator, LuxR family  33.49 
 
 
236 aa  80.5  0.00000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  35.87 
 
 
220 aa  80.1  0.00000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_014210  Ndas_2024  two component transcriptional regulator, LuxR family  34.26 
 
 
220 aa  80.5  0.00000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.876474  normal 
 
 
-
 
NC_011831  Cagg_1769  two component transcriptional regulator, LuxR family  31.31 
 
 
219 aa  80.1  0.00000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.221401  normal  0.0578747 
 
 
-
 
NC_013525  Tter_1109  two component transcriptional regulator, LuxR family  34.27 
 
 
218 aa  80.5  0.00000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008025  Dgeo_0315  two component LuxR family transcriptional regulator  29.81 
 
 
214 aa  79.7  0.00000000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  hitchhiker  0.0084678 
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  31.31 
 
 
220 aa  79.7  0.00000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_5522  two component LuxR family transcriptional regulator  31.8 
 
 
219 aa  79.7  0.00000000000003  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_9329  response regulator receiver protein  33.5 
 
 
217 aa  79.3  0.00000000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  30.88 
 
 
237 aa  79.3  0.00000000000004  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_009664  Krad_1350  two component transcriptional regulator, LuxR family  36.09 
 
 
249 aa  79  0.00000000000005  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.691965  normal 
 
 
-
 
NC_009972  Haur_4039  two component LuxR family transcriptional regulator  28.51 
 
 
250 aa  79  0.00000000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.512873  n/a   
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  30.88 
 
 
237 aa  78.6  0.00000000000006  Frankia sp. CcI3  Bacteria  normal  0.272345  normal 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  31.39 
 
 
224 aa  79  0.00000000000006  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008148  Rxyl_2809  two component LuxR family transcriptional regulator  33.49 
 
 
219 aa  78.6  0.00000000000007  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  29.28 
 
 
233 aa  78.6  0.00000000000007  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_008699  Noca_3643  two component LuxR family transcriptional regulator  36.54 
 
 
215 aa  78.6  0.00000000000007  Nocardioides sp. JS614  Bacteria  normal  0.516516  n/a   
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  31.65 
 
 
221 aa  78.6  0.00000000000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7346  two component transcriptional regulator, LuxR family  35.07 
 
 
211 aa  78.2  0.00000000000008  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0451998 
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  27.96 
 
 
213 aa  78.2  0.00000000000008  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  33.97 
 
 
229 aa  77.4  0.0000000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2087  two component LuxR family transcriptional regulator  31.78 
 
 
213 aa  78.2  0.0000000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0358431  n/a   
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  30.63 
 
 
217 aa  77.8  0.0000000000001  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  32.57 
 
 
212 aa  77.8  0.0000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0186  response regulator receiver protein  31 
 
 
213 aa  77.8  0.0000000000001  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00000327076  n/a   
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  32.85 
 
 
221 aa  77.8  0.0000000000001  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_009664  Krad_2599  two component transcriptional regulator, LuxR family  32.85 
 
 
211 aa  77.8  0.0000000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_012853  Rleg_5633  two component transcriptional regulator, LuxR family  32.99 
 
 
203 aa  77.8  0.0000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.603295  normal 
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  32.51 
 
 
209 aa  77.4  0.0000000000001  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0645  two component transcriptional regulator, LuxR family  31.4 
 
 
220 aa  77  0.0000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.691779  normal 
 
 
-
 
NC_013552  DhcVS_374  DNA-binding response regulator, LuxR family  28.44 
 
 
232 aa  76.6  0.0000000000002  Dehalococcoides sp. VS  Bacteria  hitchhiker  0.0000120759  n/a   
 
 
-
 
NC_011658  BCAH187_A2375  DNA-binding response regulator, LuxR family  30.14 
 
 
209 aa  76.6  0.0000000000002  Bacillus cereus AH187  Bacteria  normal  0.248491  n/a   
 
 
-
 
NC_013093  Amir_5893  two component transcriptional regulator, LuxR family  33.18 
 
 
218 aa  77  0.0000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_0485  two component LuxR family transcriptional regulator  34.04 
 
 
208 aa  77  0.0000000000002  Arthrobacter sp. FB24  Bacteria  normal  0.0855535  n/a   
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  31.86 
 
 
236 aa  77  0.0000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  30.84 
 
 
213 aa  77  0.0000000000002  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  33.95 
 
 
225 aa  77.4  0.0000000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_009664  Krad_4263  two component transcriptional regulator, LuxR family  35.81 
 
 
230 aa  76.6  0.0000000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.455968 
 
 
-
 
NC_014210  Ndas_2432  two component transcriptional regulator, LuxR family  37.82 
 
 
233 aa  76.6  0.0000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.199835  normal  0.129248 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  32.39 
 
 
231 aa  77.4  0.0000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_009921  Franean1_0533  two component LuxR family transcriptional regulator  35.35 
 
 
219 aa  77  0.0000000000002  Frankia sp. EAN1pec  Bacteria  normal  0.405575  normal 
 
 
-
 
NC_011725  BCB4264_A1495  DNA-binding response regulator  30 
 
 
210 aa  76.6  0.0000000000002  Bacillus cereus B4264  Bacteria  unclonable  0.0000174821  n/a   
 
 
-
 
NC_009972  Haur_2171  two component LuxR family transcriptional regulator  29.72 
 
 
218 aa  77  0.0000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0762379  n/a   
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  32.86 
 
 
215 aa  76.3  0.0000000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_005957  BT9727_1322  response regulator  30 
 
 
210 aa  75.9  0.0000000000004  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  7.30192e-17  n/a   
 
 
-
 
NC_005957  BT9727_2048  response regulator  29.91 
 
 
209 aa  76.3  0.0000000000004  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.102554  n/a   
 
 
-
 
NC_011658  BCAH187_A1601  DNA-binding response regulator  30 
 
 
210 aa  75.9  0.0000000000004  Bacillus cereus AH187  Bacteria  unclonable  0.00000000136266  n/a   
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  28.64 
 
 
226 aa  75.9  0.0000000000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  29.55 
 
 
225 aa  75.9  0.0000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_007530  GBAA_1457  DNA-binding response regulator  30 
 
 
210 aa  75.9  0.0000000000004  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000538049  n/a   
 
 
-
 
NC_007530  GBAA_2265  LuxR family DNA-binding response regulator  29.91 
 
 
209 aa  76.3  0.0000000000004  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.201191  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1363  two component LuxR family transcriptional regulator  30 
 
 
210 aa  75.9  0.0000000000004  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.0039551  n/a   
 
 
-
 
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