More than 300 homologs were found in PanDaTox collection
for query gene Tbd_2786 on replicon NC_007404
Organism: Thiobacillus denitrificans ATCC 25259



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007404  Tbd_2786  two component LuxR family transcriptional regulator  100 
 
 
210 aa  424  1e-118  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0443035  normal  0.922606 
 
 
-
 
NC_009524  PsycPRwf_0663  two component LuxR family transcriptional regulator  36.23 
 
 
219 aa  136  3.0000000000000003e-31  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  37.56 
 
 
303 aa  135  4e-31  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.887336 
 
 
-
 
NC_007404  Tbd_2464  two component LuxR family transcriptional regulator  36.41 
 
 
221 aa  134  8e-31  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007204  Psyc_0602  nitrate/nitrite response regulator  34.65 
 
 
219 aa  134  9.999999999999999e-31  Psychrobacter arcticus 273-4  Bacteria  normal  0.790372  normal 
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  34.13 
 
 
219 aa  132  3e-30  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  34.13 
 
 
219 aa  131  6e-30  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.817999 
 
 
-
 
NC_011312  VSAL_I2370  nitrate/nitrite response regulator protein NarP  32.5 
 
 
203 aa  130  1.0000000000000001e-29  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03853  transcriptional regulator NarL  35.29 
 
 
217 aa  130  1.0000000000000001e-29  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000020037  n/a   
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  33.02 
 
 
231 aa  129  2.0000000000000002e-29  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  36.57 
 
 
237 aa  128  6e-29  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_009253  Dred_2108  two component LuxR family transcriptional regulator  33.18 
 
 
218 aa  127  1.0000000000000001e-28  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  34.91 
 
 
235 aa  126  2.0000000000000002e-28  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  33.33 
 
 
219 aa  126  2.0000000000000002e-28  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02120  DNA-binding response regulator in two-component regulatory system with NarQ or NarX  33.97 
 
 
215 aa  126  3e-28  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2331  transcriptional regulator NarP  33.97 
 
 
215 aa  126  3e-28  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1457  transcriptional regulator NarP  33.97 
 
 
215 aa  126  3e-28  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.956805 
 
 
-
 
NC_011353  ECH74115_3330  transcriptional regulator NarP  33.97 
 
 
215 aa  126  3e-28  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_02079  hypothetical protein  33.97 
 
 
215 aa  126  3e-28  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2492  transcriptional regulator NarP  33.97 
 
 
215 aa  126  3e-28  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2341  transcriptional regulator NarP  33.97 
 
 
215 aa  126  3e-28  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.277554 
 
 
-
 
NC_010658  SbBS512_E0748  transcriptional regulator NarP  33.97 
 
 
215 aa  126  3e-28  Shigella boydii CDC 3083-94  Bacteria  normal  0.251733  n/a   
 
 
-
 
NC_007777  Francci3_3253  two component LuxR family transcriptional regulator  34.78 
 
 
213 aa  125  5e-28  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_0433  two component LuxR family transcriptional regulator  34.53 
 
 
223 aa  124  7e-28  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0424  two component transcriptional regulator, LuxR family  34.53 
 
 
223 aa  124  7e-28  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1466  two component transcriptional regulator, LuxR family  33.97 
 
 
215 aa  124  8.000000000000001e-28  Escherichia coli DH1  Bacteria  normal  0.25338  n/a   
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  35.65 
 
 
237 aa  124  8.000000000000001e-28  Frankia sp. CcI3  Bacteria  normal  0.272345  normal 
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  34.72 
 
 
253 aa  124  9e-28  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  33.8 
 
 
250 aa  124  1e-27  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_009708  YpsIP31758_1270  nitrate/nitrite response regulator protein NarP  33.18 
 
 
209 aa  124  1e-27  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.214676  n/a   
 
 
-
 
NC_010465  YPK_1384  two component LuxR family transcriptional regulator  32.86 
 
 
209 aa  123  2e-27  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2794  nitrate/nitrite response regulator protein NarP  32.86 
 
 
209 aa  123  2e-27  Yersinia pestis Angola  Bacteria  normal  normal  0.0858473 
 
 
-
 
NC_013530  Xcel_0190  two component transcriptional regulator, LuxR family  35.71 
 
 
219 aa  122  3e-27  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.146862  n/a   
 
 
-
 
NC_009832  Spro_3490  two component LuxR family transcriptional regulator  32.5 
 
 
210 aa  122  4e-27  Serratia proteamaculans 568  Bacteria  normal  0.0559776  normal 
 
 
-
 
NC_013522  Taci_0801  two component transcriptional regulator, LuxR family  35.92 
 
 
227 aa  122  5e-27  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  33.49 
 
 
238 aa  122  5e-27  Frankia sp. CcI3  Bacteria  normal  normal  0.135118 
 
 
-
 
NC_013159  Svir_22850  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  32.08 
 
 
239 aa  122  5e-27  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.711047 
 
 
-
 
NC_011080  SNSL254_A2430  transcriptional regulator NarP  33.33 
 
 
215 aa  120  9.999999999999999e-27  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.426027  normal  0.504703 
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  33.18 
 
 
242 aa  120  9.999999999999999e-27  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_009953  Sare_1528  two component LuxR family transcriptional regulator  35.44 
 
 
212 aa  120  9.999999999999999e-27  Salinispora arenicola CNS-205  Bacteria  normal  0.212037  hitchhiker  0.000165031 
 
 
-
 
NC_011205  SeD_A2589  transcriptional regulator NarP  33.33 
 
 
215 aa  120  9.999999999999999e-27  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.167087 
 
 
-
 
NC_009380  Strop_1577  response regulator receiver  35.38 
 
 
212 aa  120  9.999999999999999e-27  Salinispora tropica CNB-440  Bacteria  normal  normal  0.967001 
 
 
-
 
NC_011094  SeSA_A2472  transcriptional regulator NarP  33.33 
 
 
215 aa  119  1.9999999999999998e-26  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_4012  transcriptional regulator NarL  33.18 
 
 
214 aa  119  1.9999999999999998e-26  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  32.71 
 
 
234 aa  119  1.9999999999999998e-26  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.336237 
 
 
-
 
NC_011149  SeAg_B2381  transcriptional regulator NarP  33.33 
 
 
215 aa  119  1.9999999999999998e-26  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2486  transcriptional regulator NarP  33.33 
 
 
215 aa  120  1.9999999999999998e-26  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.187807  normal  0.0115945 
 
 
-
 
NC_010625  Bphy_5955  two component LuxR family transcriptional regulator  30.52 
 
 
215 aa  119  3e-26  Burkholderia phymatum STM815  Bacteria  normal  normal  0.132796 
 
 
-
 
NC_009972  Haur_4648  two component LuxR family transcriptional regulator  33.02 
 
 
219 aa  119  3e-26  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  34.39 
 
 
225 aa  119  3e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_010571  Oter_1284  two component LuxR family transcriptional regulator  34.31 
 
 
209 aa  119  3e-26  Opitutus terrae PB90-1  Bacteria  normal  0.479266  normal 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  31.6 
 
 
216 aa  119  3.9999999999999996e-26  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1399  transcriptional regulator NarL  33.49 
 
 
219 aa  118  4.9999999999999996e-26  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0261138  normal 
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  33.82 
 
 
212 aa  118  4.9999999999999996e-26  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3982  DNA-binding nitrate/nitrite response regulator  30.1 
 
 
209 aa  118  6e-26  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008699  Noca_0992  regulatory protein, LuxR  32.54 
 
 
218 aa  118  7e-26  Nocardioides sp. JS614  Bacteria  normal  0.850793  n/a   
 
 
-
 
CP001509  ECD_03553  DNA-binding response regulator in two-component regulatory system wtih UhpB  34.87 
 
 
196 aa  118  7.999999999999999e-26  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0034  two component transcriptional regulator, LuxR family  34.87 
 
 
196 aa  118  7.999999999999999e-26  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3882  DNA-binding transcriptional activator UhpA  34.87 
 
 
196 aa  118  7.999999999999999e-26  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E4250  DNA-binding transcriptional activator UhpA  34.87 
 
 
196 aa  118  7.999999999999999e-26  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0030  DNA-binding transcriptional activator UhpA  34.87 
 
 
196 aa  118  7.999999999999999e-26  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_4034  DNA-binding transcriptional activator UhpA  34.87 
 
 
196 aa  118  7.999999999999999e-26  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.383338 
 
 
-
 
NC_011353  ECH74115_5099  DNA-binding transcriptional activator UhpA  34.87 
 
 
196 aa  118  7.999999999999999e-26  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.0828785 
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  33.17 
 
 
213 aa  118  7.999999999999999e-26  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_009801  EcE24377A_4178  DNA-binding transcriptional activator UhpA  34.87 
 
 
196 aa  118  7.999999999999999e-26  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000091  transcriptional regulatory protein UhpA  32.34 
 
 
202 aa  118  7.999999999999999e-26  Vibrio sp. Ex25  Bacteria  normal  0.136186  n/a   
 
 
-
 
NC_012892  B21_03495  hypothetical protein  34.87 
 
 
196 aa  118  7.999999999999999e-26  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  33.97 
 
 
226 aa  117  9.999999999999999e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_013131  Caci_7160  two component transcriptional regulator, LuxR family  35.51 
 
 
224 aa  117  9.999999999999999e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  31.55 
 
 
211 aa  117  9.999999999999999e-26  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_2003  two component transcriptional regulator, LuxR family  32.86 
 
 
219 aa  117  1.9999999999999998e-25  Nakamurella multipartita DSM 44233  Bacteria  normal  0.183245  hitchhiker  0.00373502 
 
 
-
 
NC_011094  SeSA_A4000  DNA-binding transcriptional activator UhpA  34.36 
 
 
196 aa  117  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.348805  normal 
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  30.2 
 
 
209 aa  117  1.9999999999999998e-25  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  31.1 
 
 
218 aa  116  1.9999999999999998e-25  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_013595  Sros_4744  response regulator receiver protein  30.88 
 
 
209 aa  117  1.9999999999999998e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  0.620464  normal  0.690137 
 
 
-
 
NC_012912  Dd1591_3504  DNA-binding transcriptional activator UhpA  34.36 
 
 
196 aa  117  1.9999999999999998e-25  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B4016  DNA-binding transcriptional activator UhpA  34.36 
 
 
196 aa  117  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A4179  DNA-binding transcriptional activator UhpA  34.36 
 
 
196 aa  117  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A4071  DNA-binding transcriptional activator UhpA  34.36 
 
 
196 aa  117  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3278  two component LuxR family transcriptional regulator  31.58 
 
 
214 aa  117  1.9999999999999998e-25  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.749326 
 
 
-
 
NC_010001  Cphy_0080  two component LuxR family transcriptional regulator  32.68 
 
 
212 aa  115  3e-25  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0829  two component LuxR family transcriptional regulator  30.19 
 
 
209 aa  115  3e-25  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00236991  n/a   
 
 
-
 
NC_008009  Acid345_2443  two component LuxR family transcriptional regulator  33 
 
 
215 aa  116  3e-25  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_3748  two component LuxR family transcriptional regulator  33.17 
 
 
211 aa  116  3e-25  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.107866  normal 
 
 
-
 
NC_008321  Shewmr4_0657  two component LuxR family transcriptional regulator  29.95 
 
 
209 aa  115  3e-25  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000000493749  normal  0.229808 
 
 
-
 
NC_008322  Shewmr7_3365  two component LuxR family transcriptional regulator  29.95 
 
 
209 aa  115  3e-25  Shewanella sp. MR-7  Bacteria  hitchhiker  0.0000651556  normal  0.0242167 
 
 
-
 
NC_008577  Shewana3_0656  two component LuxR family transcriptional regulator  29.95 
 
 
209 aa  115  3e-25  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.000000830399  normal  0.140804 
 
 
-
 
NC_009523  RoseRS_0454  two component LuxR family transcriptional regulator  32.68 
 
 
208 aa  115  3.9999999999999997e-25  Roseiflexus sp. RS-1  Bacteria  normal  0.698939  hitchhiker  0.00367889 
 
 
-
 
NC_008009  Acid345_0268  two component LuxR family transcriptional regulator  33.33 
 
 
217 aa  115  5e-25  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.289536  normal 
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  34.85 
 
 
214 aa  115  5e-25  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal 
 
 
-
 
NC_011083  SeHA_C4121  DNA-binding transcriptional activator UhpA  33.85 
 
 
196 aa  114  6.9999999999999995e-25  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.97066  normal 
 
 
-
 
NC_009921  Franean1_6933  two component LuxR family transcriptional regulator  32.37 
 
 
244 aa  115  6.9999999999999995e-25  Frankia sp. EAN1pec  Bacteria  normal  normal  0.322421 
 
 
-
 
NC_010184  BcerKBAB4_2087  two component LuxR family transcriptional regulator  30.43 
 
 
213 aa  114  7.999999999999999e-25  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0358431  n/a   
 
 
-
 
NC_007412  Ava_C0116  two component LuxR family transcriptional regulator  31.19 
 
 
209 aa  114  7.999999999999999e-25  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_4062  two component LuxR family transcriptional regulator  32.37 
 
 
216 aa  114  7.999999999999999e-25  Frankia sp. EAN1pec  Bacteria  normal  0.0448793  normal  0.300284 
 
 
-
 
NC_009436  Ent638_0027  DNA-binding transcriptional activator UhpA  34.54 
 
 
197 aa  114  7.999999999999999e-25  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  32.11 
 
 
230 aa  114  1.0000000000000001e-24  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_013757  Gobs_3437  two component transcriptional regulator, LuxR family  32.85 
 
 
248 aa  114  1.0000000000000001e-24  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.39912  n/a   
 
 
-
 
NC_013093  Amir_5375  two component transcriptional regulator, LuxR family  30.93 
 
 
218 aa  114  1.0000000000000001e-24  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_38420  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  32.41 
 
 
226 aa  114  1.0000000000000001e-24  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
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