More than 300 homologs were found in PanDaTox collection
for query gene Ssed_3068 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_3068  two component, sigma54 specific, Fis family transcriptional regulator  100 
 
 
452 aa  919    Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1616  two component, sigma54 specific, Fis family transcriptional regulator  85.21 
 
 
452 aa  793    Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2299  response regulator receiver protein  77.26 
 
 
446 aa  706    Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3230  flagellar regulatory protein C  79.47 
 
 
446 aa  731    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_2578  two component, sigma54 specific, Fis family transcriptional regulator  79.91 
 
 
446 aa  731    Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1364  two component, sigma54 specific, Fis family transcriptional regulator  81.46 
 
 
447 aa  756    Shewanella loihica PV-4  Bacteria  normal  0.885668  normal 
 
 
-
 
NC_009901  Spea_1359  two component, sigma54 specific, Fis family transcriptional regulator  81.68 
 
 
450 aa  761    Shewanella pealeana ATCC 700345  Bacteria  normal  0.594792  n/a   
 
 
-
 
NC_009997  Sbal195_3070  two component, sigma54 specific, Fis family transcriptional regulator  80.09 
 
 
447 aa  728    Shewanella baltica OS195  Bacteria  normal  normal  0.6792 
 
 
-
 
NC_009052  Sbal_2928  two component, sigma54 specific, Fis family transcriptional regulator  80.53 
 
 
447 aa  729    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2938  two component, sigma54 specific, Fis family transcriptional regulator  80.31 
 
 
447 aa  727    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1322  sigma-54 factor, interaction region  80.79 
 
 
446 aa  737    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1280  two component, sigma54 specific, Fis family transcriptional regulator  80.53 
 
 
446 aa  733    Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1347  two component, sigma54 specific, Fis family transcriptional regulator  80.31 
 
 
446 aa  733    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1435  two component, sigma54 specific, transcriptional regulator, Fis family  80.31 
 
 
447 aa  727    Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1180  two component, sigma54 specific, transcriptional regulator, Fis family protein  80.84 
 
 
449 aa  725    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1340  two component, sigma54 specific, Fis family transcriptional regulator  80.31 
 
 
446 aa  733    Shewanella sp. ANA-3  Bacteria  normal  normal  0.598769 
 
 
-
 
NC_013456  VEA_002813  flagellar regulatory protein FleQ  62.69 
 
 
469 aa  575  1.0000000000000001e-163  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1500  flagellar regulatory protein C  63.44 
 
 
446 aa  564  1.0000000000000001e-159  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2310  sigma-54 dependent response regulator  61.17 
 
 
478 aa  563  1.0000000000000001e-159  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_03164  hypothetical protein  62.55 
 
 
469 aa  561  1.0000000000000001e-159  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008228  Patl_3049  two component, sigma54 specific, Fis family transcriptional regulator  62.11 
 
 
447 aa  558  1e-158  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1719  flagellar regulatory protein C  62.08 
 
 
479 aa  556  1e-157  Vibrio cholerae O395  Bacteria  normal  0.0473988  n/a   
 
 
-
 
NC_011138  MADE_02891  flagellar regulatory protein C  61.45 
 
 
445 aa  553  1e-156  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3450  two component, sigma54 specific, Fis family transcriptional regulator  56.07 
 
 
448 aa  482  1e-135  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1999  two component, sigma54 specific, Fis family transcriptional regulator  53.67 
 
 
481 aa  479  1e-134  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  56.25 
 
 
470 aa  477  1e-133  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  55.39 
 
 
470 aa  469  1.0000000000000001e-131  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  55.85 
 
 
458 aa  469  1.0000000000000001e-131  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  54.97 
 
 
451 aa  463  1e-129  Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  54.51 
 
 
473 aa  462  1e-129  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  54.75 
 
 
451 aa  459  9.999999999999999e-129  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_007492  Pfl01_1534  two component, sigma-54 specific, Fis family transcriptional regulator  53.8 
 
 
463 aa  458  9.999999999999999e-129  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1496  two component, sigma54 specific, Fis family transcriptional regulator  54.53 
 
 
451 aa  456  1e-127  Pseudomonas putida F1  Bacteria  normal  0.190196  normal  0.699272 
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  54.06 
 
 
471 aa  454  1.0000000000000001e-126  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  54 
 
 
471 aa  453  1.0000000000000001e-126  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_1444  two component, sigma54 specific, Fis family transcriptional regulator  52.37 
 
 
459 aa  445  1.0000000000000001e-124  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2191  diguanylate cyclase/phosphodiesterase  53.05 
 
 
497 aa  447  1.0000000000000001e-124  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp1726  hypothetical protein  50.9 
 
 
437 aa  440  9.999999999999999e-123  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1726  hypothetical protein  50.67 
 
 
437 aa  438  9.999999999999999e-123  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007298  Daro_0775  helix-turn-helix, Fis-type  51.88 
 
 
457 aa  436  1e-121  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.118214 
 
 
-
 
NC_011662  Tmz1t_2897  two component, sigma54 specific, transcriptional regulator, Fis family  49.79 
 
 
473 aa  427  1e-118  Thauera sp. MZ1T  Bacteria  normal  0.189439  n/a   
 
 
-
 
NC_007484  Noc_2361  two component sigma-54 specific, transcriptional regulator, Fis famliy  51.76 
 
 
449 aa  422  1e-117  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1972  response regulator receiver protein  48.79 
 
 
455 aa  400  9.999999999999999e-111  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0707  two component, sigma54 specific, Fis family transcriptional regulator  46.86 
 
 
469 aa  374  1e-102  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.112148  normal  0.322603 
 
 
-
 
NC_008789  Hhal_0500  two component, sigma54 specific, Fis family transcriptional regulator  48.49 
 
 
476 aa  350  4e-95  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_1156  sigma54 specific transcriptional regulator, Fis family  44.04 
 
 
457 aa  349  6e-95  Thioalkalivibrio sp. K90mix  Bacteria  normal  hitchhiker  0.00283001 
 
 
-
 
NC_013457  VEA_001184  putative two-component response regulator  42.58 
 
 
443 aa  336  3.9999999999999995e-91  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0797  two component, sigma54 specific, transcriptional regulator, Fis family  40.04 
 
 
472 aa  331  2e-89  Rhodothermus marinus DSM 4252  Bacteria  normal  0.241811  n/a   
 
 
-
 
NC_012918  GM21_2062  two component, sigma54 specific, transcriptional regulator, Fis family  42.86 
 
 
449 aa  327  3e-88  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000000000496565 
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  41.65 
 
 
457 aa  326  4.0000000000000003e-88  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2018  two component, sigma-54 specific, Fis family transcriptional regulator  41.92 
 
 
447 aa  324  2e-87  Geobacter uraniireducens Rf4  Bacteria  normal  0.110893  n/a   
 
 
-
 
NC_009052  Sbal_3981  sigma-54 dependent trancsriptional regulator  48.62 
 
 
433 aa  320  3.9999999999999996e-86  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_04971  acetoacetate metabolism regulatory protein AtoC  42.13 
 
 
444 aa  320  5e-86  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_0079  sigma-54 dependent trancsriptional regulator  47.51 
 
 
433 aa  319  5e-86  Shewanella sediminis HAW-EB3  Bacteria  normal  0.819278  normal 
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  41.19 
 
 
461 aa  319  5e-86  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  41.19 
 
 
461 aa  318  1e-85  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  41.19 
 
 
461 aa  318  1e-85  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  42.11 
 
 
461 aa  318  1e-85  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_012892  B21_02106  hypothetical protein  41.19 
 
 
461 aa  318  1e-85  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  41.19 
 
 
461 aa  318  1e-85  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_010814  Glov_2942  two component, sigma54 specific, transcriptional regulator, Fis family  41.54 
 
 
451 aa  317  2e-85  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0470  sigma-54 dependent response regulator  42.42 
 
 
453 aa  316  5e-85  Geobacter sulfurreducens PCA  Bacteria  normal  0.253212  n/a   
 
 
-
 
NC_009439  Pmen_4419  two component, sigma54 specific, Fis family transcriptional regulator  44.59 
 
 
469 aa  316  6e-85  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.475055 
 
 
-
 
NC_011883  Ddes_0769  two component, sigma54 specific, transcriptional regulator, Fis family  40.7 
 
 
453 aa  314  1.9999999999999998e-84  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.165448  n/a   
 
 
-
 
NC_009719  Plav_2180  two component, sigma54 specific, Fis family transcriptional regulator  41.59 
 
 
455 aa  313  2.9999999999999996e-84  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_0300  two component, sigma54 specific, Fis family transcriptional regulator  46.15 
 
 
457 aa  313  3.9999999999999997e-84  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_1016  two component, sigma54 specific, Fis family transcriptional regulator  46.94 
 
 
455 aa  312  7.999999999999999e-84  Caulobacter sp. K31  Bacteria  normal  0.963955  normal 
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  40.78 
 
 
457 aa  312  7.999999999999999e-84  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  41.14 
 
 
454 aa  312  9e-84  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3478  sigma-54 dependent trancsriptional regulator  48.48 
 
 
436 aa  311  1e-83  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2160  two component, sigma54 specific, transcriptional regulator, Fis family  42.37 
 
 
449 aa  310  2.9999999999999997e-83  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0540  two component, sigma54 specific, Fis family transcriptional regulator  42.29 
 
 
445 aa  310  2.9999999999999997e-83  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0437  two component, sigma54 specific, Fis family transcriptional regulator  39.71 
 
 
490 aa  309  5.9999999999999995e-83  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_0085  sigma-54 dependent trancsriptional regulator  47.35 
 
 
435 aa  309  8e-83  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  40.82 
 
 
458 aa  308  1.0000000000000001e-82  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2341  two component, sigma54 specific, Fis family transcriptional regulator  40.35 
 
 
450 aa  308  1.0000000000000001e-82  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_3661  sigma-54 factor, interaction region  47.66 
 
 
434 aa  308  1.0000000000000001e-82  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_0682  two component, sigma54 specific, Fis family transcriptional regulator  47.58 
 
 
456 aa  308  1.0000000000000001e-82  Maricaulis maris MCS10  Bacteria  normal  0.105475  normal  0.791887 
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  41.67 
 
 
463 aa  308  1.0000000000000001e-82  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_008751  Dvul_2853  two component, sigma54 specific, Fis family transcriptional regulator  38.76 
 
 
476 aa  307  3e-82  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  40.79 
 
 
462 aa  307  3e-82  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
NC_011146  Gbem_2591  two component, sigma54 specific, transcriptional regulator, Fis family  40.48 
 
 
457 aa  306  4.0000000000000004e-82  Geobacter bemidjiensis Bem  Bacteria  normal  0.313706  n/a   
 
 
-
 
NC_013440  Hoch_3222  two component, sigma54 specific, transcriptional regulator, Fis family  38.39 
 
 
447 aa  306  4.0000000000000004e-82  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0905113 
 
 
-
 
NC_010814  Glov_3407  two component, sigma54 specific, transcriptional regulator, Fis family  38.49 
 
 
458 aa  306  5.0000000000000004e-82  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2145  two component signal transduction response regulator  40.09 
 
 
492 aa  306  5.0000000000000004e-82  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1032  two component, sigma54 specific, Fis family transcriptional regulator  39.44 
 
 
461 aa  305  9.000000000000001e-82  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.454426 
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  38.36 
 
 
451 aa  305  1.0000000000000001e-81  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0214  two component, sigma54 specific, Fis family transcriptional regulator  39.78 
 
 
455 aa  304  2.0000000000000002e-81  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.662344 
 
 
-
 
NC_011004  Rpal_1461  two component, sigma54 specific, transcriptional regulator, Fis family  42.72 
 
 
459 aa  303  4.0000000000000003e-81  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.402822  n/a   
 
 
-
 
NC_007958  RPD_3842  two component, sigma54 specific, transcriptional regulator, Fis family  42.89 
 
 
459 aa  303  5.000000000000001e-81  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0615627  normal 
 
 
-
 
NC_008554  Sfum_0643  two component, sigma54 specific, Fis family transcriptional regulator  37.9 
 
 
478 aa  303  5.000000000000001e-81  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  39.01 
 
 
463 aa  303  5.000000000000001e-81  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
NC_009457  VC0395_A1516  C4-dicarboxylate transport transcriptional regulatory protein  40.7 
 
 
446 aa  302  8.000000000000001e-81  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1312  two component, sigma54 specific, Fis family transcriptional regulator  37.45 
 
 
455 aa  301  2e-80  Desulfotomaculum reducens MI-1  Bacteria  normal  0.502008  n/a   
 
 
-
 
NC_007778  RPB_1276  two component, sigma54 specific, Fis family transcriptional regulator  48.78 
 
 
459 aa  300  2e-80  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0790  two component, sigma54 specific, transcriptional regulator, Fis family  38.5 
 
 
466 aa  301  2e-80  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013173  Dbac_1017  two component, sigma54 specific, transcriptional regulator, Fis family  40.09 
 
 
445 aa  300  4e-80  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.246569  n/a   
 
 
-
 
NC_009675  Anae109_4152  two component, sigma54 specific, Fis family transcriptional regulator  39.39 
 
 
480 aa  300  4e-80  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.038607 
 
 
-
 
NC_010814  Glov_2158  two component, sigma54 specific, transcriptional regulator, Fis family  38.13 
 
 
453 aa  299  5e-80  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2392  two component, sigma54 specific, transcriptional regulator, Fis family  39.16 
 
 
458 aa  300  5e-80  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0321511  normal 
 
 
-
 
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