More than 300 homologs were found in PanDaTox collection
for query gene Shew_3153 on replicon NC_009092
Organism: Shewanella loihica PV-4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009092  Shew_3153  LysR family transcriptional regulator  100 
 
 
334 aa  699    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2899  transcriptional regulator-like protein  92.83 
 
 
327 aa  629  1e-179  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3566  LysR family transcriptional regulator  59.88 
 
 
332 aa  428  1e-119  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3970  LysR family transcriptional regulator  37.42 
 
 
317 aa  239  4e-62  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0237  LysR family transcriptional regulator  36.31 
 
 
323 aa  223  3e-57  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0238  transcriptional regulator-like protein  35.08 
 
 
332 aa  198  9e-50  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0512  transcriptional regulator-like protein  32.65 
 
 
314 aa  158  1e-37  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3969  LysR family transcriptional regulator  26.19 
 
 
321 aa  103  5e-21  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3589  transcriptional regulator-like protein  26.94 
 
 
318 aa  98.6  1e-19  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3572  LysR family transcriptional regulator  26.9 
 
 
325 aa  94  3e-18  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0238  LysR family transcriptional regulator  25.17 
 
 
321 aa  92  1e-17  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0239  LysR family transcriptional regulator  26.51 
 
 
321 aa  91.7  2e-17  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2072  LysR family transcriptional regulator  29.05 
 
 
305 aa  89  1e-16  Shewanella sp. MR-4  Bacteria  normal  0.0341772  normal  0.872543 
 
 
-
 
NC_008322  Shewmr7_1903  LysR family transcriptional regulator  28.23 
 
 
305 aa  88.6  1e-16  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3964  LysR family transcriptional regulator  25 
 
 
322 aa  84.3  0.000000000000002  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3766  LysR family transcriptional regulator  25.86 
 
 
322 aa  84.3  0.000000000000002  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3839  LysR family transcriptional regulator  25.86 
 
 
322 aa  84.3  0.000000000000002  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_4287  LysR family transcriptional regulator  26.38 
 
 
322 aa  85.1  0.000000000000002  Shewanella baltica OS195  Bacteria  normal  normal  0.128947 
 
 
-
 
NC_009438  Sputcn32_0311  LysR family transcriptional regulator  25.94 
 
 
322 aa  84.7  0.000000000000002  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0180  transcriptional regulator, LysR family  26.38 
 
 
322 aa  84.3  0.000000000000003  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0179  LysR family transcriptional regulator  26.38 
 
 
322 aa  84  0.000000000000003  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_4210  LysR family transcriptional regulator  26.63 
 
 
335 aa  84  0.000000000000004  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0243  LysR family transcriptional regulator  26.77 
 
 
321 aa  78.6  0.0000000000001  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2900  hypothetical protein  26.34 
 
 
324 aa  78.6  0.0000000000001  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3154  LysR family transcriptional regulator  26.29 
 
 
324 aa  79  0.0000000000001  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_4244  LysR family transcriptional regulator  30.95 
 
 
313 aa  77  0.0000000000004  Shewanella baltica OS195  Bacteria  unclonable  0.000000170817  hitchhiker  0.00215615 
 
 
-
 
NC_009665  Shew185_4123  LysR family transcriptional regulator  30.95 
 
 
313 aa  77  0.0000000000004  Shewanella baltica OS185  Bacteria  hitchhiker  0.000527418  n/a   
 
 
-
 
NC_009052  Sbal_0214  LysR family transcriptional regulator  30 
 
 
313 aa  75.5  0.000000000001  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000152565  n/a   
 
 
-
 
NC_004347  SO_1661  LysR family transcriptional regulator  24.48 
 
 
328 aa  74.7  0.000000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_0216  transcriptional regulator, LysR family  30.48 
 
 
313 aa  75.1  0.000000000002  Shewanella baltica OS223  Bacteria  hitchhiker  0.0000946054  normal  0.293728 
 
 
-
 
NC_009831  Ssed_0520  LysR family transcriptional regulator  25.1 
 
 
321 aa  74.3  0.000000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2612  LysR family transcriptional regulator  24.71 
 
 
350 aa  75.1  0.000000000002  Shewanella sp. MR-4  Bacteria  normal  0.13871  hitchhiker  0.00000334013 
 
 
-
 
NC_009438  Sputcn32_3500  LysR family transcriptional regulator  31.34 
 
 
313 aa  74.7  0.000000000002  Shewanella putrefaciens CN-32  Bacteria  normal  0.0910886  n/a   
 
 
-
 
NC_008700  Sama_2227  LysR family transcriptional regulator  25.7 
 
 
330 aa  73.9  0.000000000003  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000157838  normal 
 
 
-
 
NC_008322  Shewmr7_0288  LysR family transcriptional regulator  21.24 
 
 
320 aa  74.3  0.000000000003  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3657  LysR family transcriptional regulator  21.77 
 
 
320 aa  73.6  0.000000000004  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2679  LysR family transcriptional regulator  24.33 
 
 
350 aa  73.9  0.000000000004  Shewanella sp. MR-7  Bacteria  normal  0.245615  hitchhiker  0.000486304 
 
 
-
 
NC_009831  Ssed_0997  LysR family transcriptional regulator  26.41 
 
 
321 aa  73.6  0.000000000005  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_2919  LysR family transcriptional regulator  25.27 
 
 
321 aa  73.2  0.000000000006  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2551  LysR family transcriptional regulator  20.82 
 
 
320 aa  71.6  0.00000000002  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3734  LysR family transcriptional regulator  29.5 
 
 
311 aa  70.5  0.00000000004  Shewanella sp. MR-4  Bacteria  normal  normal  0.457361 
 
 
-
 
NC_008322  Shewmr7_3805  LysR family transcriptional regulator  29.5 
 
 
311 aa  70.1  0.00000000005  Shewanella sp. MR-7  Bacteria  normal  0.829403  normal 
 
 
-
 
NC_009457  VC0395_A2446  LysR family transcriptional regulator  28.78 
 
 
327 aa  70.1  0.00000000005  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0917  LysR family transcriptional regulator  25.53 
 
 
321 aa  70.1  0.00000000006  Shewanella loihica PV-4  Bacteria  normal  0.0292456  normal  0.707414 
 
 
-
 
NC_009438  Sputcn32_1381  LysR family transcriptional regulator  26.2 
 
 
324 aa  69.7  0.00000000007  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2786  LysR family transcriptional regulator  25.13 
 
 
337 aa  69.7  0.00000000007  Shewanella sp. ANA-3  Bacteria  normal  0.989304  hitchhiker  0.00367325 
 
 
-
 
NC_009831  Ssed_3590  transcriptional regulator-like protein  23.57 
 
 
316 aa  69.3  0.00000000008  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4455  LysR family transcriptional regulator  24.71 
 
 
307 aa  68.9  0.0000000001  Burkholderia phymatum STM815  Bacteria  normal  normal  0.326178 
 
 
-
 
NC_011663  Sbal223_2873  transcriptional regulator, LysR family  23.65 
 
 
324 aa  68.6  0.0000000001  Shewanella baltica OS223  Bacteria  hitchhiker  0.00000342278  hitchhiker  0.00000105997 
 
 
-
 
NC_009997  Sbal195_1510  LysR family transcriptional regulator  23.65 
 
 
324 aa  68.2  0.0000000002  Shewanella baltica OS195  Bacteria  decreased coverage  0.000904227  normal 
 
 
-
 
NC_009052  Sbal_1479  LysR family transcriptional regulator  25.54 
 
 
324 aa  68.2  0.0000000002  Shewanella baltica OS155  Bacteria  hitchhiker  0.000211446  n/a   
 
 
-
 
NC_009665  Shew185_1474  LysR family transcriptional regulator  25.54 
 
 
324 aa  68.2  0.0000000002  Shewanella baltica OS185  Bacteria  hitchhiker  0.00000000979777  n/a   
 
 
-
 
NC_008577  Shewana3_3932  transcriptional regulator  29 
 
 
311 aa  67.4  0.0000000003  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00420556  normal 
 
 
-
 
NC_008345  Sfri_0617  transcriptional regulator, LysR family protein  25.77 
 
 
319 aa  67.4  0.0000000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.468918  n/a   
 
 
-
 
NC_009457  VC0395_A0310  LysR family transcriptional regulator  26.87 
 
 
308 aa  67  0.0000000004  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3571  LysR family transcriptional regulator  23.61 
 
 
316 aa  67  0.0000000004  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0820  transcriptional regulator, LysR family  28.49 
 
 
310 aa  66.6  0.0000000005  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.24868  normal 
 
 
-
 
NC_009831  Ssed_3565  LysR family transcriptional regulator  21.93 
 
 
326 aa  66.2  0.0000000007  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_002079  LysR-family transcriptional regulator  25.93 
 
 
313 aa  66.2  0.0000000007  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1282  LysR family transcriptional regulator  27.57 
 
 
306 aa  65.5  0.000000001  Colwellia psychrerythraea 34H  Bacteria  normal  0.526163  n/a   
 
 
-
 
NC_004347  SO_4525.1  LysR family transcriptional regulator  28 
 
 
243 aa  65.1  0.000000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010552  BamMC406_3156  LysR family transcriptional regulator  23.72 
 
 
308 aa  64.3  0.000000003  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_4311  transcriptional regulator, LysR family  24.22 
 
 
309 aa  63.9  0.000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  0.386764  normal  0.967846 
 
 
-
 
NC_004347  SO_4571  LysR family transcriptional regulator  24.06 
 
 
319 aa  63.9  0.000000004  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007492  Pfl01_0141  LysR family transcriptional regulator  24.3 
 
 
305 aa  63.9  0.000000004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3981  LysR family transcriptional regulator  19.84 
 
 
320 aa  63.2  0.000000006  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_0324  LysR family transcriptional regulator  25.81 
 
 
323 aa  63.2  0.000000007  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00357  transcriptional regulator  24.87 
 
 
323 aa  63.2  0.000000007  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_0195  transcriptional regulator, LysR family  28.14 
 
 
323 aa  62.8  0.000000008  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II0328  LysR family transcriptional regulator  22.71 
 
 
306 aa  62.8  0.000000008  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B0642  LysR family transcriptional regulator  23.53 
 
 
309 aa  62.4  0.000000009  Burkholderia xenovorans LB400  Bacteria  normal  0.915851  normal  0.108834 
 
 
-
 
NC_008228  Patl_2618  LysR family transcriptional regulator  22.35 
 
 
306 aa  62.8  0.000000009  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0195  LysR family transcriptional regulator  26.67 
 
 
323 aa  62  0.00000001  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_4139  LysR family transcriptional regulator  26.67 
 
 
323 aa  62  0.00000001  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_5290  LysR family transcriptional regulator  24.02 
 
 
327 aa  62  0.00000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3262  LysR family transcriptional regulator  29.12 
 
 
304 aa  62.4  0.00000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.4347 
 
 
-
 
NC_009654  Mmwyl1_3666  LysR family transcriptional regulator  25.98 
 
 
326 aa  61.6  0.00000002  Marinomonas sp. MWYL1  Bacteria  normal  0.0496532  normal 
 
 
-
 
NC_003295  RSc2243  transcription regulator protein  21.43 
 
 
326 aa  61.6  0.00000002  Ralstonia solanacearum GMI1000  Bacteria  normal  0.145641  normal 
 
 
-
 
NC_010515  Bcenmc03_4479  LysR family transcriptional regulator  23.32 
 
 
308 aa  61.2  0.00000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0253  LysR family transcriptional regulator  25.45 
 
 
318 aa  61.2  0.00000002  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.88055 
 
 
-
 
NC_007511  Bcep18194_B2495  LysR family transcriptional regulator  23.17 
 
 
306 aa  61.6  0.00000002  Burkholderia sp. 383  Bacteria  normal  0.025453  normal 
 
 
-
 
NC_010515  Bcenmc03_3900  LysR family transcriptional regulator  22.86 
 
 
305 aa  61.2  0.00000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.447965 
 
 
-
 
NC_008044  TM1040_1751  LysR family transcriptional regulator  36.67 
 
 
299 aa  61.6  0.00000002  Ruegeria sp. TM1040  Bacteria  normal  0.4326  normal 
 
 
-
 
NC_008061  Bcen_5115  LysR family transcriptional regulator  23.75 
 
 
308 aa  61.2  0.00000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.337357  n/a   
 
 
-
 
NC_008322  Shewmr7_3824  LysR family transcriptional regulator  27.84 
 
 
319 aa  61.2  0.00000002  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3957  LysR family transcriptional regulator  25.25 
 
 
322 aa  61.2  0.00000002  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_3620  LysR family transcriptional regulator  22.58 
 
 
305 aa  61.6  0.00000002  Burkholderia cenocepacia HI2424  Bacteria  decreased coverage  0.00938056  normal 
 
 
-
 
NC_008577  Shewana3_3949  LysR family transcriptional regulator  27.84 
 
 
319 aa  60.8  0.00000003  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_4272  LysR family transcriptional regulator  26.67 
 
 
323 aa  60.8  0.00000003  Shewanella baltica OS195  Bacteria  normal  normal  0.0731118 
 
 
-
 
NC_009901  Spea_3428  LysR family transcriptional regulator  27.47 
 
 
303 aa  61.2  0.00000003  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00000186024  n/a   
 
 
-
 
NC_010581  Bind_1485  LysR family transcriptional regulator  21.4 
 
 
314 aa  60.8  0.00000003  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.397513  normal 
 
 
-
 
NC_008321  Shewmr4_3751  LysR family transcriptional regulator  27.84 
 
 
319 aa  60.8  0.00000003  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0912  transcriptional regulator, LysR family protein  23.64 
 
 
318 aa  60.8  0.00000003  Shewanella frigidimarina NCIMB 400  Bacteria  decreased coverage  0.000235744  n/a   
 
 
-
 
NC_010625  Bphy_6977  LysR family transcriptional regulator  26.84 
 
 
324 aa  60.8  0.00000003  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_5744  LysR family transcriptional regulator  23.75 
 
 
308 aa  60.8  0.00000003  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.205378 
 
 
-
 
NC_007954  Sden_3495  regulatory protein, LysR  25.62 
 
 
322 aa  60.5  0.00000004  Shewanella denitrificans OS217  Bacteria  normal  0.268712  n/a   
 
 
-
 
NC_010682  Rpic_2448  transcriptional regulator, LysR family  21.07 
 
 
325 aa  60.5  0.00000004  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5015  LysR family transcriptional regulator  22.92 
 
 
308 aa  60.5  0.00000004  Burkholderia ambifaria AMMD  Bacteria  normal  0.357265  normal 
 
 
-
 
NC_008784  BMASAVP1_1198  LysR family transcriptional regulator  24.22 
 
 
307 aa  60.1  0.00000005  Burkholderia mallei SAVP1  Bacteria  normal  0.601339  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0052  LysR family transcriptional regulator  24.22 
 
 
307 aa  60.1  0.00000005  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
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