| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3981 |
|---|
| Symbol | |
|---|
| ID | 5610422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4869972 |
|---|
| End bp | 4870934 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640934935 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001475713 |
|---|
| Protein GI | 157377113 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATATTG AACGGCTGGA CTATCACTCT TTAATTGTAT TCGAATCCGT GAGTCGTCAC
TTGAACGCTG GCTTAGTCGC CAACGAATTA GGCATGAGTA TTTCGTCGGT AAGCCGGCAC
CTGGGTATAT TACGGGACAT CTTTAAAGAC GTACTGTTTA TTCGTCGGGC GCAGGGCTTC
GTATTAACCG ATAAAGCAAT ACAGGTTTTA CCCTGCGTTA AACAGCTTCT ACATGGTTAC
CAGACTCTCA AACATGACCA TACCCAATTT AATCCGCTGA CCGCCAAGGG TCACTTTAAG
ATATATGCCT ACAACGAATT TACCTATGTG ATAAATAAAG TCCTCAATGA ATTCATTTTA
CCACTGGCTC CAAATTTAAC ATTTGAGATA AGAACCCTGT CCAGTGACTG CAGCCGGGCT
ATCGAACACG GTGAAATCGA TTTTGCCGTG GTATACGAAC ACTTTAAAGA TCATAAGATC
ATCAGCGAGA TGCTCTCCCC CACTGAAGAG CTGTTTTTAA TCGCCAAGGC CGGACATCCG
GTTTTCGATG GCGAGCTTAA TATCGATAAT CTATGCAAGT ATGGCTATTT TGCGCTGGAT
AATTTTAACG ACCTCTGCTC GCCACTACTG GAGCAGATAG CAAAAAAACA GGGAAAGAGC
CTTAATATCA CAGGGGCCAC AGACAATATC GCCGCACTGA GTCGTCATAT TATCGATACG
GGTTCAATTT CGATGAGCTG CAATGTATTT ACCCGGGAAT ACTTTGACTT AATTCCAGAT
ATACAAACTT GTCCCCTACC TCATGAGCTT ACCGAACAAC TACTTGATAT GATCAACGTA
GGACGCAGAG TAGGAAATTA TCTGATTTAC TCCGAAATTA ATCAGTCAGC GACTCACCAC
TGGCTGAAGC AGCAACTGTT TAACACCATC AGAGATGAGT GGTATCTGGC GTTAAAGTCT
TAA
|
|---|
| Protein sequence | MNIERLDYHS LIVFESVSRH LNAGLVANEL GMSISSVSRH LGILRDIFKD VLFIRRAQGF
VLTDKAIQVL PCVKQLLHGY QTLKHDHTQF NPLTAKGHFK IYAYNEFTYV INKVLNEFIL
PLAPNLTFEI RTLSSDCSRA IEHGEIDFAV VYEHFKDHKI ISEMLSPTEE LFLIAKAGHP
VFDGELNIDN LCKYGYFALD NFNDLCSPLL EQIAKKQGKS LNITGATDNI AALSRHIIDT
GSISMSCNVF TREYFDLIPD IQTCPLPHEL TEQLLDMINV GRRVGNYLIY SEINQSATHH
WLKQQLFNTI RDEWYLALKS
|
|---|
| |