| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1751 |
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| Symbol | |
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| ID | 4075815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1843922 |
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| End bp | 1844821 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638007065 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_613746 |
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| Protein GI | 99081592 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.4326 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGTTG ATATATCGCT CCTTCGCGTC TTCCACGCCG TTATGGAAGA GCGCAATGTC
ACTGCCGCTG CGCGCCGTCT GGGACAATCA CAAAGCACGG TCAGTGCAGC GCTCGCACGG
TTGCGGGATG CGTTGGGCGA TGAGTTGTTC CTGCGCGCAC GCTATGGTGT TGAGCCAACT
GAAAAAGCGC TACAGATCGC GCCCGACATC GCCGCCGGCC TCGATCGACT CGAACAGGCG
TTTCGCGCTG CAGAACCCTT TGACCCCATT CGCAGCACCC GGCGTTTCCG GTTACTGCTG
GGCCCTTACG CCGAAGTGGT GCTGGCGCCG GATCTGGCCG AAGCCTTTGC TCAGCACGCC
CCCAAAGCCC AGCTTGAGCT TGCGCCGATC GGTCCTGACC TAGATCCACG CAAGCTCGCC
GCCCAAAGCT TTGACCTCGC CATTGGCCGC TTTGCACCGC CCCCCGACGA TCTTGTGGTC
TCGGATCTCT TTAGTGACGG GTTTCGCTGC ATCGTCGCCC CAGCCGCTCT GCCCGAGGGC
GCCAGTCTGG ATCTCGATCT CTATGAGACC CTGCCCCATG TGATCGTCGC GCCCCCCGGC
AGATGGCGGA CAGGAGTGCA TAAGTTGACC GCTGCCAGCG GCTTGCAGCG CAATACAGCC
GTGGCAGTGT CGCATTTTCT GACGGCCGCC CCGACCGTGG CCCGTATCAA CGGGATCGCC
ACTGTCCCTG CCCGCATCGC CGCCATGGTC GCGGCACCTT ATGGGCTGCG CAATGTTGCA
GTGCCGCGCG ATCTTGGGAC TTTTCCAACC CAGATCGCCT GGCACCCGCA CCAGCGCAGA
GATCCCCGTC ATGTCTGGCT GAGAGACCTA CTTTTGTCTC TCACCGCGAC AAGCACCTGA
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| Protein sequence | MTVDISLLRV FHAVMEERNV TAAARRLGQS QSTVSAALAR LRDALGDELF LRARYGVEPT
EKALQIAPDI AAGLDRLEQA FRAAEPFDPI RSTRRFRLLL GPYAEVVLAP DLAEAFAQHA
PKAQLELAPI GPDLDPRKLA AQSFDLAIGR FAPPPDDLVV SDLFSDGFRC IVAPAALPEG
ASLDLDLYET LPHVIVAPPG RWRTGVHKLT AASGLQRNTA VAVSHFLTAA PTVARINGIA
TVPARIAAMV AAPYGLRNVA VPRDLGTFPT QIAWHPHQRR DPRHVWLRDL LLSLTATST
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