| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3565 |
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| Symbol | |
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| ID | 5611554 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4344938 |
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| End bp | 4345918 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640934518 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001475297 |
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| Protein GI | 157376697 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATAATC TAAAACTCGA TACTTTAGAT CTACTCAGCA TTAATATTCT GGTTAATTTA
TATGAGCATC ACTCTGCCAC ATTTGTGGCT AAACAGATGA ATATTCCTGC ACCAAAAATT
AGCCGTAGCC TACAGCATTC CAGAGTTATT TTTAATAACC CACTCTTTAT CAGAAAAAAA
CATGGCTTAA TTCCCAATGA ATTTACCAAA CAGCTCTACC CCATCGCTAA GGAAATAGTG
CAATGCTCTG AGCACCTGTA CCAACTCAAT GTCGACGACA GTTCTGGTGA GAGATCCCAT
TTCACCATTC ATGTCAGCGA TCTTATCGTT CATCAATTTC CACAACTATT GAAGAACGCC
GTCAAAGAGA GCCATCTGGA TCTTAAGTTC ACTATCAGCC CCGATTCCGA CAACCTAATC
ACGGATATTA TTGAGAATCG AATCGATATC GGGTTAATCA GCGAGTCCGG AAGTGACTAC
CTGGGGGAGA TCGATAACCA TGTCGACGTC GTGGCACTGA AACGGCTATC TCACCTCTAT
CTGGTGTGTG ATCTTCACCA TCCCCTGTTA AAGCAGGAGA TCACCTTAGA GTCCATCGCA
CAATATCCCT TTGTGAGCAT TCTGGGCAAA CCCGAGCGCG CAACATCGGA TCCATTTTTA
CTCTACTGCA GCCAGCACCA GCTTGCATAT CACCTGAAGA ACGGAGATCT GATTAATCAT
AACTTCAATA TTGAGACGCT CAACCAACAT ATAACCGATA CCGATGCAGT CGCACTGCTG
CCTTTCAGCA AAATCTATGA TCATAGTAAT CAGATGCCGA ACTTACATGT TTGTCGATTA
TCAGAGATAG AAACCGAGCG GCTCTACCTA TCAATTAACA GTCCGACCCT ATACTTAGTC
ACTAAGAAAG GGCACCTATC GTCTAATGCC GCCTGGCTGG TTGAAACCAT CGGGCAAATC
GTCAATCGCA GCATCCATTA A
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| Protein sequence | MHNLKLDTLD LLSINILVNL YEHHSATFVA KQMNIPAPKI SRSLQHSRVI FNNPLFIRKK
HGLIPNEFTK QLYPIAKEIV QCSEHLYQLN VDDSSGERSH FTIHVSDLIV HQFPQLLKNA
VKESHLDLKF TISPDSDNLI TDIIENRIDI GLISESGSDY LGEIDNHVDV VALKRLSHLY
LVCDLHHPLL KQEITLESIA QYPFVSILGK PERATSDPFL LYCSQHQLAY HLKNGDLINH
NFNIETLNQH ITDTDAVALL PFSKIYDHSN QMPNLHVCRL SEIETERLYL SINSPTLYLV
TKKGHLSSNA AWLVETIGQI VNRSIH
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