| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2618 |
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| Symbol | |
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| ID | 4174378 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3181690 |
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| End bp | 3182610 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638055639 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_662187 |
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| Protein GI | 109898932 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAAAA TAGACAGGTT AGATATTAAA CAACTCAGGA TTTTTCAGGC GCTGATACGC
GAGAAAAATG CGTCAAAAGC GGCCAGTCAA CTGGGCTTAA CCCAACAAGC GGTGAGCGAA
CAGTTAAAGA AGCTACGCGA TGTGTTCGAC GACAGGTTGT TCCTGCGAAA AACCAACGGC
TTTATTCCTA CACCACTGGC GGAACACCTT TCCGTTGATA TCGATAAACT GTTGAACGGT
TTTCAGGCAC TGTTATCGCC AAAAGTGTTT AACCCAAAAA CCATCAGTGG TGAGTATGTT
ATTTCTGCCA CGGATTATGC GCAACAGGTT GTATTGCCTA GCTTAATTGC AAAACTTAGA
ATTGAGTCGC CAAATCTGAA GATCATCGTT CGGGACTTTG AAATAGACAC ACTTCATGAC
TTAATGCTAA GCGGCAAAGT GAACTTGGCG ATTGCCTTTC CTGATTATAT CCCTGATAGC
TACCCCATCA TCAACTTGTT TGAAGAGCAC CATGTTTGTG TGGCATCTCG CCATGCTTCT
ATCGCGACGC AAAGCCCATC GCTGGCTGAG GTGGCAAGCT ACCCGAGTAT TATTGCGTCA
CCTTCACGGC CAAACTTTAA AGGCTCAATT GATGACTGGT TTAAAGGGTT TGGTTTAACA
CGCAATGTGG TGGTGTCAGC CCCGTGTTTT TCGATTGTGC CCATGTATTT GAACACCACA
GACTCCATCG CCTTTTTGCC CTCAAGAGCA ATTAAGGGCC TAGATTTAGT CGAAATTGAA
CTTGAGCATT GCCCTGAGCC ATTCGATGTT ATTGCTGCTT GGCATCCTAG ATACAATGAC
GATTCACTGC AAAAATGGAT TATCTCGAAG TTGACCGATG AGCCTGTCGC CGCAAACTTG
GCCACAAGAA GTGGCGACTA G
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| Protein sequence | MSKIDRLDIK QLRIFQALIR EKNASKAASQ LGLTQQAVSE QLKKLRDVFD DRLFLRKTNG
FIPTPLAEHL SVDIDKLLNG FQALLSPKVF NPKTISGEYV ISATDYAQQV VLPSLIAKLR
IESPNLKIIV RDFEIDTLHD LMLSGKVNLA IAFPDYIPDS YPIINLFEEH HVCVASRHAS
IATQSPSLAE VASYPSIIAS PSRPNFKGSI DDWFKGFGLT RNVVVSAPCF SIVPMYLNTT
DSIAFLPSRA IKGLDLVEIE LEHCPEPFDV IAAWHPRYND DSLQKWIISK LTDEPVAANL
ATRSGD
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