105 homologs were found in PanDaTox collection
for query gene Pput_2144 on replicon NC_009512
Organism: Pseudomonas putida F1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009512  Pput_2144  response regulator receiver/ANTAR domain-containing protein  100 
 
 
194 aa  400  1e-111  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1767  aliphatic amidase regulator  61.58 
 
 
196 aa  243  9.999999999999999e-64  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_20590  aliphatic amidase regulator  59.47 
 
 
196 aa  238  2.9999999999999997e-62  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.00237487  normal  0.77718 
 
 
-
 
NC_010002  Daci_3637  response regulator receiver/ANTAR domain-containing protein  34.41 
 
 
229 aa  105  6e-22  Delftia acidovorans SPH-1  Bacteria  normal  0.0573839  normal  0.0644959 
 
 
-
 
NC_009485  BBta_2995  hypothetical protein  34.43 
 
 
213 aa  103  2e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0461  response regulator receiver/ANTAR domain-containing protein  32.63 
 
 
208 aa  100  2e-20  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.537058 
 
 
-
 
NC_010515  Bcenmc03_5906  response regulator receiver/ANTAR domain-containing protein  32.63 
 
 
206 aa  98.6  5e-20  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.311364  normal  0.0816062 
 
 
-
 
NC_007953  Bxe_C1304  response regulator receiver/ANTAR domain-containing protein  33.16 
 
 
206 aa  95.9  3e-19  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B1847  response regulator receiver/ANTAR domain-containing protein  32.97 
 
 
203 aa  94  1e-18  Burkholderia sp. 383  Bacteria  normal  0.871675  normal  0.25422 
 
 
-
 
NC_012858  Rleg_6646  ANTAR domain protein with unknown sensor  35.14 
 
 
207 aa  90.9  1e-17  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.274077  normal  0.0846161 
 
 
-
 
NC_011366  Rleg2_5693  ANTAR domain protein with unknown sensor  33.51 
 
 
207 aa  84.7  8e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0468503  normal 
 
 
-
 
NC_008786  Veis_4901  response regulator receiver/ANTAR domain-containing protein  29.69 
 
 
216 aa  84.3  0.000000000000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.138975 
 
 
-
 
NC_009439  Pmen_4597  response regulator receiver/ANTAR domain-containing protein  31.49 
 
 
199 aa  80.9  0.00000000000001  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0050  response regulator receiver and ANTAR domain protein  31.12 
 
 
200 aa  79.7  0.00000000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_5752  response regulator receiver and ANTAR domain protein  27.6 
 
 
216 aa  76.6  0.0000000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  0.320255  normal  0.798388 
 
 
-
 
NC_012880  Dd703_0802  ANTAR domain protein with unknown sensor  28.09 
 
 
212 aa  76.3  0.0000000000003  Dickeya dadantii Ech703  Bacteria  normal  0.0673655  n/a   
 
 
-
 
NC_010505  Mrad2831_4420  response regulator receiver/ANTAR domain-containing protein  31.94 
 
 
208 aa  72  0.000000000006  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2420  transcription antitermination protein, putative  25.53 
 
 
210 aa  70.5  0.00000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2207  ANTAR  25.53 
 
 
210 aa  70.1  0.00000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009429  Rsph17025_3278  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  29.89 
 
 
199 aa  66.6  0.0000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.225286  normal  0.994762 
 
 
-
 
NC_007494  RSP_3259  transcription antitermination protein  28.74 
 
 
199 aa  63.5  0.000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1952  putative aliphatic amidase regulator (AmiR)  37.5 
 
 
148 aa  62.4  0.000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_12950  response regulator with putative antiterminator output domain  33.33 
 
 
189 aa  62.4  0.000000004  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.22629  normal  0.269406 
 
 
-
 
NC_009050  Rsph17029_3991  response regulator receiver/ANTAR domain-containing protein  28.74 
 
 
199 aa  61.6  0.000000006  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1081  response regulator receiver/ANTAR domain-containing protein  28.18 
 
 
247 aa  58.2  0.00000007  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_1754  response regulator receiver/ANTAR domain-containing protein  27.04 
 
 
204 aa  57.8  0.00000009  Sinorhizobium medicae WSM419  Bacteria  normal  0.299806  normal  0.0795607 
 
 
-
 
NC_009253  Dred_2808  response regulator receiver/ANTAR domain-containing protein  31.43 
 
 
220 aa  57.4  0.0000001  Desulfotomaculum reducens MI-1  Bacteria  decreased coverage  0.00041222  n/a   
 
 
-
 
NC_013174  Jden_1223  response regulator receiver and ANTAR domain protein  29.09 
 
 
229 aa  57  0.0000001  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.788892 
 
 
-
 
NC_013530  Xcel_1506  response regulator receiver and ANTAR domain protein  32 
 
 
220 aa  57.4  0.0000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_2955  response regulator  31.13 
 
 
199 aa  57  0.0000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1468  response regulator receiver and ANTAR domain-containing protein  30 
 
 
197 aa  55.8  0.0000004  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_1977  response regulator receiver and ANTAR domain protein  31.34 
 
 
227 aa  55.1  0.0000006  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.239234  normal 
 
 
-
 
NC_013521  Sked_20250  response regulator with putative antiterminator output domain  29.09 
 
 
226 aa  55.1  0.0000006  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0947543 
 
 
-
 
NC_013517  Sterm_1051  response regulator receiver and ANTAR domain protein  30.91 
 
 
192 aa  54.7  0.0000008  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_2031  response regulator receiver/ANTAR domain-containing protein  31.29 
 
 
198 aa  54.7  0.0000009  Candidatus Desulforudis audaxviator MP104C  Bacteria  unclonable  0.00000000027462  n/a   
 
 
-
 
NC_012669  Bcav_2208  response regulator receiver and ANTAR domain protein  30.67 
 
 
220 aa  54.7  0.0000009  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_14950  response regulator with putative antiterminator output domain  28.83 
 
 
215 aa  54.3  0.000001  Brachybacterium faecium DSM 4810  Bacteria  normal  0.117628  n/a   
 
 
-
 
NC_013510  Tcur_2860  response regulator receiver and ANTAR domain protein  29.63 
 
 
214 aa  53.9  0.000001  Thermomonospora curvata DSM 43183  Bacteria  normal  0.153721  n/a   
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  30.97 
 
 
210 aa  52.8  0.000003  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  30.97 
 
 
210 aa  52.8  0.000003  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  30.97 
 
 
210 aa  52.8  0.000003  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  28.57 
 
 
229 aa  52.8  0.000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  32.14 
 
 
204 aa  52.8  0.000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3159  response regulator receiver and ANTAR domain protein  29.81 
 
 
212 aa  52.8  0.000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013124  Afer_1081  response regulator receiver and ANTAR domain protein  26.02 
 
 
203 aa  52.4  0.000004  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3061  response regulator receiver and ANTAR domain protein  29.36 
 
 
194 aa  52.4  0.000004  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00113676  hitchhiker  0.000689676 
 
 
-
 
NC_013739  Cwoe_5028  response regulator receiver and ANTAR domain protein  24.59 
 
 
198 aa  52.4  0.000004  Conexibacter woesei DSM 14684  Bacteria  normal  0.181706  normal  0.0113639 
 
 
-
 
NC_008726  Mvan_2840  response regulator receiver/ANTAR domain-containing protein  27.68 
 
 
213 aa  52.4  0.000005  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0401204  normal 
 
 
-
 
NC_013093  Amir_5540  response regulator receiver and ANTAR domain protein  31.25 
 
 
200 aa  52  0.000005  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_5687  response regulator receiver and ANTAR domain protein  30.39 
 
 
210 aa  52  0.000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_3208  response regulator receiver and ANTAR domain protein  28.44 
 
 
200 aa  52  0.000005  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2822  response regulator  33.01 
 
 
191 aa  51.6  0.000008  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0660  response regulator receiver/ANTAR domain-containing protein  33.66 
 
 
202 aa  51.6  0.000008  Geobacter metallireducens GS-15  Bacteria  normal  0.132289  normal  0.0166929 
 
 
-
 
NC_008541  Arth_1694  response regulator receiver/ANTAR domain-containing protein  29.09 
 
 
201 aa  50.8  0.00001  Arthrobacter sp. FB24  Bacteria  normal  0.136848  n/a   
 
 
-
 
NC_009953  Sare_3378  response regulator receiver/ANTAR domain-containing protein  31.52 
 
 
206 aa  51.2  0.00001  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0248143 
 
 
-
 
NC_009972  Haur_4203  response regulator receiver/ANTAR domain-containing protein  36.05 
 
 
195 aa  51.2  0.00001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.793788  n/a   
 
 
-
 
NC_011886  Achl_1689  response regulator receiver and ANTAR domain protein  29.09 
 
 
201 aa  50.8  0.00001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000385738 
 
 
-
 
NC_009380  Strop_3151  response regulator receiver  31.52 
 
 
206 aa  50.1  0.00002  Salinispora tropica CNB-440  Bacteria  normal  normal  0.332536 
 
 
-
 
NC_013216  Dtox_3764  response regulator receiver and ANTAR domain protein  29.21 
 
 
194 aa  50.1  0.00002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.0425638  normal 
 
 
-
 
NC_007794  Saro_2973  response regulator receiver/ANTAR domain-containing protein  32.41 
 
 
217 aa  49.3  0.00003  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1146  response regulator receiver/ANTAR domain-containing protein  29.7 
 
 
188 aa  49.7  0.00003  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000000356105  n/a   
 
 
-
 
NC_009664  Krad_2958  response regulator receiver and ANTAR domain protein  28.43 
 
 
229 aa  48.1  0.00009  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.799557  normal  0.502809 
 
 
-
 
NC_014158  Tpau_2483  response regulator receiver and ANTAR domain protein  31.82 
 
 
205 aa  47.8  0.00009  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_2893  response regulator receiver  27 
 
 
206 aa  47.4  0.0001  Gordonia bronchialis DSM 43247  Bacteria  normal  0.723289  n/a   
 
 
-
 
NC_013947  Snas_3775  response regulator receiver and ANTAR domain-containing protein  25.33 
 
 
207 aa  47.8  0.0001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.665226  normal  0.0118196 
 
 
-
 
NC_007333  Tfu_1181  response regulator receiver  27.88 
 
 
207 aa  47  0.0002  Thermobifida fusca YX  Bacteria  normal  0.928438  n/a   
 
 
-
 
NC_009565  TBFG_11642  two component system transcriptional regulator  26.13 
 
 
205 aa  45.8  0.0004  Mycobacterium tuberculosis F11  Bacteria  normal  0.0378541  normal  0.634495 
 
 
-
 
NC_010511  M446_3741  response regulator receiver/ANTAR domain-containing protein  26.21 
 
 
202 aa  45.8  0.0004  Methylobacterium sp. 4-46  Bacteria  normal  0.755024  normal  0.109153 
 
 
-
 
NC_008699  Noca_3018  response regulator receiver  28.85 
 
 
207 aa  45.4  0.0005  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_0203  response regulator receiver/ANTAR domain-containing protein  28.72 
 
 
190 aa  45.4  0.0005  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2047  response regulator receiver and ANTAR domain protein  29.25 
 
 
191 aa  45.4  0.0005  Chloroflexus aggregans DSM 9485  Bacteria  unclonable  0.000000169009  normal 
 
 
-
 
NC_012858  Rleg_6673  ANTAR domain protein with unknown sensor  27.91 
 
 
193 aa  45.4  0.0005  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0170316  normal  0.327107 
 
 
-
 
NC_013385  Adeg_1890  response regulator receiver and ANTAR domain protein  35.9 
 
 
197 aa  45.4  0.0005  Ammonifex degensii KC4  Bacteria  normal  0.0366782  n/a   
 
 
-
 
NC_007958  RPD_4296  ANTAR  28.18 
 
 
194 aa  45.4  0.0006  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0466063 
 
 
-
 
NC_010505  Mrad2831_3323  response regulator receiver/ANTAR domain-containing protein  24.62 
 
 
213 aa  45.1  0.0007  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.168384  normal 
 
 
-
 
NC_013235  Namu_2394  response regulator receiver and ANTAR domain protein  26.72 
 
 
218 aa  44.7  0.0008  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00108275  hitchhiker  0.000509226 
 
 
-
 
NC_008609  Ppro_3459  response regulator receiver/ANTAR domain-containing protein  29.79 
 
 
205 aa  44.3  0.001  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4528  response regulator receiver/ANTAR domain-containing protein  27.36 
 
 
196 aa  44.3  0.001  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1086  response regulator receiver/ANTAR domain-containing protein  26.47 
 
 
202 aa  43.9  0.001  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_1455  response regulator receiver and ANTAR domain protein  32.26 
 
 
195 aa  43.9  0.001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.770993 
 
 
-
 
NC_011894  Mnod_2871  response regulator receiver and ANTAR domain protein  25.24 
 
 
204 aa  44.7  0.001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.372726  n/a   
 
 
-
 
NC_013235  Namu_0678  response regulator receiver and ANTAR domain protein  26.79 
 
 
243 aa  43.9  0.001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_1618  response regulator receiver/ANTAR domain-containing protein  26.85 
 
 
199 aa  43.9  0.002  Frankia sp. CcI3  Bacteria  normal  0.144201  normal  0.292856 
 
 
-
 
NC_007963  Csal_0209  response regulator receiver/ANTAR domain-containing protein  23.68 
 
 
195 aa  43.5  0.002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_2035  response regulator receiver/ANTAR domain-containing protein  26.85 
 
 
199 aa  43.5  0.002  Frankia sp. EAN1pec  Bacteria  normal  normal  0.480822 
 
 
-
 
NC_010172  Mext_4498  ANTAR domain-containing protein  26.21 
 
 
195 aa  43.5  0.002  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_5014  response regulator receiver and ANTAR domain protein  26.21 
 
 
195 aa  43.5  0.002  Methylobacterium populi BJ001  Bacteria  normal  normal  0.757534 
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  25.98 
 
 
197 aa  43.9  0.002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_011757  Mchl_4961  response regulator receiver and ANTAR domain protein  26.21 
 
 
195 aa  43.5  0.002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.044252 
 
 
-
 
NC_011988  Avi_5900  two component response regulator  32.26 
 
 
195 aa  43.5  0.002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0829  response regulator receiver:ANTAR  28.89 
 
 
191 aa  42.7  0.003  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.018256 
 
 
-
 
NC_008254  Meso_1448  response regulator receiver/ANTAR domain-containing protein  27.45 
 
 
196 aa  43.1  0.003  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1968  response regulator receiver/ANTAR domain-containing protein  24.79 
 
 
193 aa  43.1  0.003  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3658  response regulator receiver/ANTAR domain-containing protein  28.3 
 
 
194 aa  42  0.005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.568485 
 
 
-
 
NC_007520  Tcr_0769  response regulator receiver/ANTAR domain-containing protein  26.92 
 
 
214 aa  42  0.006  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.0679202  n/a   
 
 
-
 
NC_009511  Swit_1703  response regulator receiver/ANTAR domain-containing protein  27.45 
 
 
193 aa  41.6  0.006  Sphingomonas wittichii RW1  Bacteria  normal  0.242071  normal 
 
 
-
 
NC_009523  RoseRS_4102  response regulator receiver/ANTAR domain-containing protein  32.11 
 
 
194 aa  42  0.006  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2517  response regulator receiver and ANTAR domain protein  28.57 
 
 
194 aa  42  0.006  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1632  response regulator receiver and ANTAR domain protein  31.18 
 
 
207 aa  42  0.006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0623893 
 
 
-
 
NC_013517  Sterm_0084  response regulator receiver and ANTAR domain protein  25.37 
 
 
242 aa  42  0.006  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.682854  n/a   
 
 
-
 
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