More than 300 homologs were found in PanDaTox collection
for query gene Lcho_3216 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_3216  methyl-accepting chemotaxis sensory transducer  100 
 
 
579 aa  1143    Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007908  Rfer_3609  methyl-accepting chemotaxis sensory transducer  60.34 
 
 
596 aa  578  1e-164  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2152  methyl-accepting chemotaxis sensory transducer  57.82 
 
 
589 aa  524  1e-147  Acidovorax sp. JS42  Bacteria  normal  normal  0.0117525 
 
 
-
 
NC_010002  Daci_1600  methyl-accepting chemotaxis sensory transducer  53.79 
 
 
535 aa  508  9.999999999999999e-143  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1622  methyl-accepting chemotaxis sensory transducer  49.83 
 
 
572 aa  483  1e-135  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.415216  normal 
 
 
-
 
NC_012912  Dd1591_1453  methyl-accepting chemotaxis sensory transducer  51.46 
 
 
532 aa  459  9.999999999999999e-129  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3485  methyl-accepting chemotaxis sensory transducer  52.44 
 
 
573 aa  446  1.0000000000000001e-124  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000328178 
 
 
-
 
NC_007908  Rfer_2481  methyl-accepting chemotaxis sensory transducer  64.38 
 
 
579 aa  442  1e-123  Rhodoferax ferrireducens T118  Bacteria  normal  0.37743  n/a   
 
 
-
 
NC_008782  Ajs_3772  methyl-accepting chemotaxis sensory transducer  50.25 
 
 
586 aa  444  1e-123  Acidovorax sp. JS42  Bacteria  normal  0.167359  normal 
 
 
-
 
NC_008825  Mpe_A0750  methyl-accepting chemotaxis sensory transducer  48.77 
 
 
592 aa  441  9.999999999999999e-123  Methylibium petroleiphilum PM1  Bacteria  normal  0.318431  normal  0.0335504 
 
 
-
 
NC_007908  Rfer_3937  methyl-accepting chemotaxis sensory transducer  63.4 
 
 
589 aa  441  9.999999999999999e-123  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2749  methyl-accepting chemotaxis sensory transducer  74.37 
 
 
578 aa  438  1e-121  Rhodoferax ferrireducens T118  Bacteria  normal  0.274613  n/a   
 
 
-
 
NC_011992  Dtpsy_0354  methyl-accepting chemotaxis sensory transducer  49.83 
 
 
578 aa  418  9.999999999999999e-116  Acidovorax ebreus TPSY  Bacteria  normal  0.496762  n/a   
 
 
-
 
NC_007908  Rfer_0990  methyl-accepting chemotaxis sensory transducer  48.26 
 
 
542 aa  408  1.0000000000000001e-112  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3137  methyl-accepting chemotaxis sensory transducer  60.79 
 
 
532 aa  408  1.0000000000000001e-112  Rhodoferax ferrireducens T118  Bacteria  normal  0.310324  n/a   
 
 
-
 
NC_008782  Ajs_0364  methyl-accepting chemotaxis sensory transducer  50.93 
 
 
580 aa  407  1.0000000000000001e-112  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_2296  methyl-accepting chemotaxis sensory transducer  51.22 
 
 
584 aa  408  1.0000000000000001e-112  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.604223  normal  0.776041 
 
 
-
 
NC_007348  Reut_B5597  methyl-accepting chemotaxis sensory transducer  47.53 
 
 
570 aa  404  1e-111  Ralstonia eutropha JMP134  Bacteria  normal  0.253624  n/a   
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  47.13 
 
 
583 aa  402  1e-111  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_008752  Aave_0803  methyl-accepting chemotaxis sensory transducer  50.57 
 
 
540 aa  402  1e-111  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.83413 
 
 
-
 
NC_003295  RSc3412  putative methyl-accepting chemotaxis I (serine chemoreceptor) transmembrane protein  50.38 
 
 
515 aa  397  1e-109  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.934147 
 
 
-
 
NC_008782  Ajs_3087  methyl-accepting chemotaxis sensory transducer  59.22 
 
 
527 aa  397  1e-109  Acidovorax sp. JS42  Bacteria  normal  normal  0.823637 
 
 
-
 
NC_010002  Daci_4877  methyl-accepting chemotaxis sensory transducer  57.11 
 
 
614 aa  386  1e-106  Delftia acidovorans SPH-1  Bacteria  normal  0.296639  normal 
 
 
-
 
NC_007908  Rfer_0925  methyl-accepting chemotaxis sensory transducer  46.89 
 
 
552 aa  385  1e-106  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1956  methyl-accepting chemotaxis sensory transducer  61.7 
 
 
598 aa  386  1e-106  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0136938 
 
 
-
 
NC_013421  Pecwa_1820  methyl-accepting chemotaxis sensory transducer  45.51 
 
 
553 aa  384  1e-105  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4174  methyl-accepting chemotaxis sensory transducer  48.95 
 
 
522 aa  382  1e-105  Ralstonia pickettii 12J  Bacteria  normal  0.0753508  normal 
 
 
-
 
NC_012857  Rpic12D_4286  methyl-accepting chemotaxis sensory transducer  48.95 
 
 
522 aa  382  1e-105  Ralstonia pickettii 12D  Bacteria  normal  0.246906  normal  0.38481 
 
 
-
 
NC_010002  Daci_0742  methyl-accepting chemotaxis sensory transducer  45.9 
 
 
581 aa  384  1e-105  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3610  methyl-accepting chemotaxis sensory transducer  50.57 
 
 
511 aa  385  1e-105  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1417  methyl-accepting chemotaxis sensory transducer  46.64 
 
 
554 aa  384  1e-105  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.37293  n/a   
 
 
-
 
NC_007908  Rfer_1480  methyl-accepting chemotaxis sensory transducer  48.15 
 
 
537 aa  381  1e-104  Rhodoferax ferrireducens T118  Bacteria  normal  0.201713  n/a   
 
 
-
 
NC_010676  Bphyt_6336  methyl-accepting chemotaxis sensory transducer  53.79 
 
 
581 aa  377  1e-103  Burkholderia phytofirmans PsJN  Bacteria  normal  0.794546  normal 
 
 
-
 
NC_007348  Reut_B5602  methyl-accepting chemotaxis sensory transducer  46.3 
 
 
594 aa  375  1e-103  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_3880  methyl-accepting chemotaxis sensory transducer  46.98 
 
 
557 aa  377  1e-103  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4188  methyl-accepting chemotaxis sensory transducer with Cache sensor  66.87 
 
 
566 aa  378  1e-103  Variovorax paradoxus S110  Bacteria  normal  0.210427  n/a   
 
 
-
 
NC_011992  Dtpsy_3407  methyl-accepting chemotaxis sensory transducer  61.81 
 
 
653 aa  372  1e-102  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_4062  methyl-accepting chemotaxis sensory transducer  61.81 
 
 
653 aa  372  1e-102  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0428  methyl-accepting chemotaxis sensory transducer  63.78 
 
 
597 aa  374  1e-102  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_003296  RSp1406  methyl-accepting chemotaxis I  41.59 
 
 
608 aa  370  1e-101  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.13211 
 
 
-
 
NC_007404  Tbd_1619  chemotaxis sensory transducer  51.5 
 
 
559 aa  370  1e-101  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.940607  normal  0.203143 
 
 
-
 
NC_012791  Vapar_4189  methyl-accepting chemotaxis sensory transducer  45.67 
 
 
559 aa  369  1e-101  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_2259  methyl-accepting chemotaxis sensory transducer  45.55 
 
 
588 aa  370  1e-101  Burkholderia phytofirmans PsJN  Bacteria  normal  0.131825  normal  0.497854 
 
 
-
 
NC_008752  Aave_3444  methyl-accepting chemotaxis sensory transducer  63.08 
 
 
517 aa  370  1e-101  Acidovorax citrulli AAC00-1  Bacteria  normal  0.679068  normal  0.0634638 
 
 
-
 
NC_007348  Reut_B4001  histidine kinase, HAMP region: chemotaxis sensory transducer  56.12 
 
 
585 aa  366  1e-100  Ralstonia eutropha JMP134  Bacteria  normal  0.0946714  n/a   
 
 
-
 
NC_008752  Aave_2436  methyl-accepting chemotaxis sensory transducer  47.4 
 
 
539 aa  367  1e-100  Acidovorax citrulli AAC00-1  Bacteria  normal  0.633872  normal 
 
 
-
 
NC_010002  Daci_5852  methyl-accepting chemotaxis sensory transducer  57.77 
 
 
618 aa  369  1e-100  Delftia acidovorans SPH-1  Bacteria  normal  0.217953  normal 
 
 
-
 
NC_007974  Rmet_3683  methyl-accepting chemotaxis sensory transducer  47.01 
 
 
613 aa  367  1e-100  Cupriavidus metallidurans CH34  Bacteria  normal  0.755698  normal  0.0578518 
 
 
-
 
NC_010681  Bphyt_0620  methyl-accepting chemotaxis sensory transducer  45.88 
 
 
549 aa  366  1e-100  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0437284 
 
 
-
 
NC_008752  Aave_2241  methyl-accepting chemotaxis sensory transducer  64.06 
 
 
536 aa  366  1e-100  Acidovorax citrulli AAC00-1  Bacteria  unclonable  0.000000611014  hitchhiker  0.00000521325 
 
 
-
 
NC_012791  Vapar_4185  methyl-accepting chemotaxis sensory transducer  44.2 
 
 
579 aa  364  2e-99  Variovorax paradoxus S110  Bacteria  normal  0.356775  n/a   
 
 
-
 
NC_010002  Daci_4297  methyl-accepting chemotaxis sensory transducer  69.57 
 
 
471 aa  363  4e-99  Delftia acidovorans SPH-1  Bacteria  decreased coverage  0.00689697  normal 
 
 
-
 
NC_008752  Aave_2284  methyl-accepting chemotaxis sensory transducer  44.89 
 
 
547 aa  363  4e-99  Acidovorax citrulli AAC00-1  Bacteria  normal  0.206976  hitchhiker  0.0000952985 
 
 
-
 
NC_010622  Bphy_0345  methyl-accepting chemotaxis sensory transducer  45.63 
 
 
547 aa  363  5.0000000000000005e-99  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3042  methyl-accepting chemotaxis sensory transducer  57.03 
 
 
515 aa  363  5.0000000000000005e-99  Ralstonia pickettii 12J  Bacteria  normal  0.401177  normal 
 
 
-
 
NC_008825  Mpe_A2548  methyl-accepting chemotaxis protein  58.63 
 
 
525 aa  363  6e-99  Methylibium petroleiphilum PM1  Bacteria  decreased coverage  0.00975221  normal  0.500866 
 
 
-
 
NC_010002  Daci_4878  methyl-accepting chemotaxis sensory transducer  73.31 
 
 
589 aa  362  7.0000000000000005e-99  Delftia acidovorans SPH-1  Bacteria  normal  0.506831  normal 
 
 
-
 
NC_007348  Reut_B5547  methyl-accepting chemotaxis sensory transducer  61.14 
 
 
520 aa  362  7.0000000000000005e-99  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RSp0507  methyl-accepting chemotaxis I  46.99 
 
 
600 aa  362  9e-99  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_003296  RS03153  putative methyl-accepting chemotaxis transducer transmembrane protein  48.65 
 
 
524 aa  362  1e-98  Ralstonia solanacearum GMI1000  Bacteria  normal  0.471775  normal  0.0817308 
 
 
-
 
NC_012912  Dd1591_3613  methyl-accepting chemotaxis sensory transducer  41.78 
 
 
530 aa  362  1e-98  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_3678  methyl-accepting chemotaxis sensory transducer  47.49 
 
 
605 aa  361  2e-98  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.12372 
 
 
-
 
NC_012856  Rpic12D_2632  methyl-accepting chemotaxis sensory transducer with Cache sensor  56.76 
 
 
515 aa  360  3e-98  Ralstonia pickettii 12D  Bacteria  normal  0.397554  normal  0.945455 
 
 
-
 
NC_007952  Bxe_B0771  methyl-accepting chemotaxis sensory transducer  62.66 
 
 
519 aa  360  4e-98  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_003296  RSp0303  methyl-accepting chemotaxis transmembrane protein  47.06 
 
 
515 aa  358  1.9999999999999998e-97  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.0248188 
 
 
-
 
NC_003295  RSc2799  putative methyl-accepting chemotaxis transmembrane protein  57.29 
 
 
515 aa  357  2.9999999999999997e-97  Ralstonia solanacearum GMI1000  Bacteria  decreased coverage  0.00825356  normal  0.849966 
 
 
-
 
NC_010627  Bphy_7569  methyl-accepting chemotaxis sensory transducer  44.13 
 
 
576 aa  357  3.9999999999999996e-97  Burkholderia phymatum STM815  Bacteria  normal  0.448898  normal  0.153923 
 
 
-
 
NC_008752  Aave_0772  methyl-accepting chemotaxis sensory transducer  64.22 
 
 
612 aa  357  3.9999999999999996e-97  Acidovorax citrulli AAC00-1  Bacteria  normal  0.343543  normal  0.663369 
 
 
-
 
NC_010676  Bphyt_4450  methyl-accepting chemotaxis sensory transducer  62.01 
 
 
519 aa  356  5e-97  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.000313766  normal 
 
 
-
 
NC_007951  Bxe_A4080  methyl-accepting chemotaxis sensory transducer  45.06 
 
 
549 aa  356  5.999999999999999e-97  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3813  methyl-accepting chemotaxis sensory transducer  45.1 
 
 
617 aa  356  6.999999999999999e-97  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4050  methyl-accepting chemotaxis sensory transducer  47.01 
 
 
615 aa  354  2e-96  Ralstonia pickettii 12J  Bacteria  normal  0.996584  normal 
 
 
-
 
NC_007404  Tbd_1620  methyl-accepting chemotaxis sensory transducer  53.37 
 
 
559 aa  354  2e-96  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.439493  normal  0.532508 
 
 
-
 
NC_012857  Rpic12D_4162  methyl-accepting chemotaxis sensory transducer  47.01 
 
 
615 aa  354  2e-96  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_0112  methyl-accepting chemotaxis sensory transducer  42.29 
 
 
556 aa  354  2.9999999999999997e-96  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0353  methyl-accepting chemotaxis sensory transducer with Cache sensor  63.17 
 
 
564 aa  353  7e-96  Acidovorax ebreus TPSY  Bacteria  normal  0.244374  n/a   
 
 
-
 
NC_007951  Bxe_A1341  methyl-accepting chemotaxis sensory transducer  57.53 
 
 
558 aa  352  8e-96  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2496  methyl-accepting chemotaxis sensory transducer  59.89 
 
 
537 aa  352  8.999999999999999e-96  Acidovorax citrulli AAC00-1  Bacteria  decreased coverage  0.00000862286  decreased coverage  0.00394801 
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  55.75 
 
 
569 aa  352  1e-95  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_4047  methyl-accepting chemotaxis sensory transducer  40.37 
 
 
559 aa  352  1e-95  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_1232  methyl-accepting chemotaxis sensory transducer  45.6 
 
 
595 aa  352  1e-95  Burkholderia phymatum STM815  Bacteria  normal  0.0384777  normal  0.175298 
 
 
-
 
NC_008752  Aave_1960  methyl-accepting chemotaxis sensory transducer  69.05 
 
 
642 aa  350  3e-95  Acidovorax citrulli AAC00-1  Bacteria  normal  0.741418  normal  0.0148687 
 
 
-
 
NC_010551  BamMC406_2751  methyl-accepting chemotaxis sensory transducer  63 
 
 
521 aa  350  5e-95  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_0502  methyl-accepting chemotaxis protein  59.17 
 
 
546 aa  350  5e-95  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_2793  methyl-accepting chemotaxis sensory transducer  56.59 
 
 
573 aa  349  6e-95  Burkholderia phytofirmans PsJN  Bacteria  normal  0.22826  normal  0.238924 
 
 
-
 
NC_007951  Bxe_A2002  methyl-accepting chemotaxis sensory transducer  45.94 
 
 
601 aa  350  6e-95  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1514  methyl-accepting chemotaxis sensory transducer  41.62 
 
 
562 aa  349  6e-95  Dickeya dadantii Ech703  Bacteria  normal  0.957025  n/a   
 
 
-
 
NC_010717  PXO_00041  chemotaxis protein  57.51 
 
 
752 aa  349  7e-95  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.292066  n/a   
 
 
-
 
NC_007951  Bxe_A0121  methyl-accepting chemotaxis sensory transducer  43.64 
 
 
618 aa  348  1e-94  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.487659 
 
 
-
 
NC_013421  Pecwa_0106  methyl-accepting chemotaxis sensory transducer  40.58 
 
 
556 aa  348  1e-94  Pectobacterium wasabiae WPP163  Bacteria  normal  0.405526  n/a   
 
 
-
 
NC_012791  Vapar_4186  methyl-accepting chemotaxis sensory transducer  46.17 
 
 
577 aa  348  2e-94  Variovorax paradoxus S110  Bacteria  normal  0.494266  n/a   
 
 
-
 
NC_009076  BURPS1106A_0520  methyl-accepting chemotaxis protein  58.89 
 
 
546 aa  347  2e-94  Burkholderia pseudomallei 1106a  Bacteria  normal  0.640738  n/a   
 
 
-
 
NC_008752  Aave_2643  methyl-accepting chemotaxis sensory transducer  58.84 
 
 
541 aa  348  2e-94  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0238907  normal  0.0164957 
 
 
-
 
NC_008836  BMA10229_A1435  methyl-accepting chemotaxis protein  58.89 
 
 
546 aa  347  2e-94  Burkholderia mallei NCTC 10229  Bacteria  normal  0.631191  n/a   
 
 
-
 
NC_012856  Rpic12D_1408  methyl-accepting chemotaxis sensory transducer  46 
 
 
513 aa  348  2e-94  Ralstonia pickettii 12D  Bacteria  normal  0.0312904  normal  0.0311205 
 
 
-
 
NC_007951  Bxe_A2023  methyl-accepting chemotaxis sensory transducer  42.75 
 
 
538 aa  348  2e-94  Burkholderia xenovorans LB400  Bacteria  normal  0.205381  normal 
 
 
-
 
NC_009080  BMA10247_2862  methyl-accepting chemotaxis protein  58.89 
 
 
546 aa  347  2e-94  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_2891  methyl-accepting chemotaxis sensory transducer  62.69 
 
 
521 aa  347  2e-94  Burkholderia ambifaria AMMD  Bacteria  normal  0.657214  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0157  methyl-accepting chemotaxis protein  58.89 
 
 
546 aa  347  2e-94  Burkholderia mallei SAVP1  Bacteria  normal  0.293853  n/a   
 
 
-
 
NC_010622  Bphy_2972  methyl-accepting chemotaxis sensory transducer  44.98 
 
 
597 aa  347  3e-94  Burkholderia phymatum STM815  Bacteria  normal  hitchhiker  0.00113075 
 
 
-
 
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