More than 300 homologs were found in PanDaTox collection
for query gene Cthe_1823 on replicon NC_009012
Organism: Clostridium thermocellum ATCC 27405



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009012  Cthe_1823  extracellular ligand-binding receptor  100 
 
 
419 aa  852    Clostridium thermocellum ATCC 27405  Bacteria  normal  0.158541  n/a   
 
 
-
 
NC_013411  GYMC61_2778  urea ABC transporter, urea binding protein  75.18 
 
 
418 aa  635    Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013510  Tcur_3240  urea ABC transporter, urea binding protein  67.72 
 
 
405 aa  532  1e-150  Thermomonospora curvata DSM 43183  Bacteria  decreased coverage  0.00360419  n/a   
 
 
-
 
NC_013739  Cwoe_3498  urea ABC transporter, urea binding protein  65.17 
 
 
419 aa  530  1e-149  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0969064 
 
 
-
 
NC_013093  Amir_1674  urea ABC transporter, urea binding protein  62.25 
 
 
407 aa  516  1.0000000000000001e-145  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2862  urea ABC transporter, urea binding protein  61.22 
 
 
443 aa  498  1e-139  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008726  Mvan_2596  extracellular ligand-binding receptor  59.25 
 
 
402 aa  492  9.999999999999999e-139  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.677611 
 
 
-
 
NC_008312  Tery_0130  extracellular ligand-binding receptor  58.95 
 
 
423 aa  484  1e-136  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0243473 
 
 
-
 
NC_008146  Mmcs_2291  extracellular ligand-binding receptor  56.56 
 
 
421 aa  482  1e-135  Mycobacterium sp. MCS  Bacteria  normal  0.553297  n/a   
 
 
-
 
NC_009338  Mflv_3798  extracellular ligand-binding receptor  57.89 
 
 
402 aa  482  1e-135  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_2338  extracellular ligand-binding receptor  56.56 
 
 
421 aa  482  1e-135  Mycobacterium sp. KMS  Bacteria  normal  normal  0.267805 
 
 
-
 
NC_007413  Ava_4361  extracellular ligand-binding receptor  56.71 
 
 
438 aa  478  1e-134  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000367621  normal 
 
 
-
 
NC_011884  Cyan7425_2260  urea ABC transporter, urea binding protein  57.24 
 
 
440 aa  478  1e-133  Cyanothece sp. PCC 7425  Bacteria  normal  0.411735  normal 
 
 
-
 
NC_009077  Mjls_2330  extracellular ligand-binding receptor  56.35 
 
 
421 aa  476  1e-133  Mycobacterium sp. JLS  Bacteria  normal  0.26288  normal  0.0264278 
 
 
-
 
NC_014151  Cfla_0700  urea ABC transporter, urea binding protein  59.46 
 
 
463 aa  467  9.999999999999999e-131  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0172324  hitchhiker  0.0000000649369 
 
 
-
 
NC_009338  Mflv_1687  extracellular ligand-binding receptor  55.68 
 
 
413 aa  441  9.999999999999999e-123  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2418  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  55.59 
 
 
393 aa  435  1e-121  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2205  extracellular ligand-binding receptor  55.37 
 
 
393 aa  432  1e-120  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.327939  normal 
 
 
-
 
NC_012917  PC1_2161  urea ABC transporter, urea binding protein  53.49 
 
 
422 aa  433  1e-120  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.269161  n/a   
 
 
-
 
NC_013421  Pecwa_2500  urea ABC transporter, urea binding protein  53.14 
 
 
422 aa  431  1e-120  Pectobacterium wasabiae WPP163  Bacteria  normal  0.172849  n/a   
 
 
-
 
NC_009439  Pmen_0701  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  52.81 
 
 
421 aa  425  1e-118  Pseudomonas mendocina ymp  Bacteria  normal  0.525993  normal 
 
 
-
 
NC_007973  Rmet_0952  twin-arginine translocation pathway signal  51.57 
 
 
419 aa  427  1e-118  Cupriavidus metallidurans CH34  Bacteria  normal  0.553309  normal  0.40345 
 
 
-
 
NC_002947  PP_4841  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative  52.32 
 
 
421 aa  421  1e-117  Pseudomonas putida KT2440  Bacteria  normal  normal  0.365474 
 
 
-
 
NC_010322  PputGB1_4898  urea ABC transporter, urea binding protein  52.57 
 
 
421 aa  422  1e-117  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0308389 
 
 
-
 
NC_012912  Dd1591_2746  urea ABC transporter, urea binding protein  52.83 
 
 
423 aa  424  1e-117  Dickeya zeae Ech1591  Bacteria  normal  0.276837  n/a   
 
 
-
 
NC_009512  Pput_4719  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  52.32 
 
 
421 aa  421  1e-116  Pseudomonas putida F1  Bacteria  normal  0.14369  normal  0.0383938 
 
 
-
 
NC_010501  PputW619_4633  urea ABC transporter, urea binding protein  52.32 
 
 
421 aa  419  1e-116  Pseudomonas putida W619  Bacteria  normal  0.688874  normal  0.0837107 
 
 
-
 
NC_007005  Psyr_4426  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  55.44 
 
 
421 aa  420  1e-116  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.171999 
 
 
-
 
NC_007347  Reut_A0986  twin-arginine translocation pathway signal  53.66 
 
 
418 aa  421  1e-116  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4885  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  52.08 
 
 
421 aa  415  9.999999999999999e-116  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1988  putative substrate-binding periplasmic transport protein  52.33 
 
 
423 aa  417  9.999999999999999e-116  Enterobacter sp. 638  Bacteria  normal  normal  0.146215 
 
 
-
 
NC_010524  Lcho_1084  urea ABC transporter, urea binding protein  55.79 
 
 
425 aa  415  9.999999999999999e-116  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011662  Tmz1t_3931  urea ABC transporter, urea binding protein  54.5 
 
 
417 aa  416  9.999999999999999e-116  Thauera sp. MZ1T  Bacteria  normal  0.606906  n/a   
 
 
-
 
NC_009832  Spro_1421  putative substrate-binding periplasmic transport protein  52.08 
 
 
422 aa  416  9.999999999999999e-116  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2193  urea ABC transporter, urea binding protein  54.26 
 
 
418 aa  415  9.999999999999999e-116  Ralstonia pickettii 12J  Bacteria  normal  normal  0.200796 
 
 
-
 
NC_008255  CHU_1255  branched-chain amino acid ABC transporter, periplasmic protein  52.43 
 
 
445 aa  415  9.999999999999999e-116  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.857524 
 
 
-
 
NC_008463  PA14_64270  hypothetical protein  52.58 
 
 
421 aa  415  9.999999999999999e-116  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.00916173  normal 
 
 
-
 
NC_008740  Maqu_3867  extracellular ligand-binding receptor  50.37 
 
 
421 aa  417  9.999999999999999e-116  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc2041  putative urea/short-chain amide-binding signal peptide protein  54.52 
 
 
418 aa  412  1e-114  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.300905 
 
 
-
 
NC_008786  Veis_4910  extracellular ligand-binding receptor  51.36 
 
 
397 aa  414  1e-114  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.618157  normal  0.278899 
 
 
-
 
NC_010508  Bcenmc03_0880  urea ABC transporter, urea binding protein  54.84 
 
 
435 aa  411  1e-114  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.824913 
 
 
-
 
NC_012856  Rpic12D_1870  urea ABC transporter, urea binding protein  54.26 
 
 
418 aa  414  1e-114  Ralstonia pickettii 12D  Bacteria  normal  0.510403  normal  0.303887 
 
 
-
 
NC_010506  Swoo_3780  putative aliphatic amidase expression-regulating protein  51.34 
 
 
404 aa  412  1e-114  Shewanella woodyi ATCC 51908  Bacteria  normal  0.583472  hitchhiker  0.00053565 
 
 
-
 
NC_010465  YPK_2873  urea ABC transporter, urea binding protein  52.17 
 
 
422 aa  413  1e-114  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.862041  n/a   
 
 
-
 
NC_009656  PSPA7_5579  hypothetical protein  52.09 
 
 
421 aa  414  1e-114  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1340  urea ABC transporter urea binding protein  52.17 
 
 
422 aa  413  1e-114  Yersinia pestis Angola  Bacteria  normal  normal  0.231626 
 
 
-
 
NC_008060  Bcen_0431  twin-arginine translocation pathway signal  54.84 
 
 
435 aa  411  1e-114  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2794  urea ABC transporter, urea binding protein  52.17 
 
 
422 aa  413  1e-114  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0910  ABC-type branched-chain amino acid transport system periplasmic component  54.84 
 
 
435 aa  411  1e-114  Burkholderia cenocepacia HI2424  Bacteria  normal  0.988343  n/a   
 
 
-
 
NC_007298  Daro_1443  twin-arginine translocation pathway signal  54.31 
 
 
420 aa  408  1e-113  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_2251  urea ABC transporter, urea binding protein  55.11 
 
 
433 aa  408  1e-113  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0590  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  54.38 
 
 
421 aa  411  1e-113  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A4014  branched chain amino acid ABC transporter periplasmic ligand-binding protein  54.3 
 
 
435 aa  409  1e-113  Burkholderia sp. 383  Bacteria  normal  0.0416471  normal  0.65931 
 
 
-
 
NC_010551  BamMC406_0798  urea ABC transporter, urea binding protein  54.57 
 
 
435 aa  409  1e-113  Burkholderia ambifaria MC40-6  Bacteria  normal  0.398503  normal 
 
 
-
 
NC_007969  Pcryo_0994  branched-chain amino acid ABC transporter periplasmic substrate-binding protein  49.65 
 
 
454 aa  409  1e-113  Psychrobacter cryohalolentis K5  Bacteria  normal  0.603537  normal 
 
 
-
 
NC_010084  Bmul_2482  urea ABC transporter, urea binding protein  54.84 
 
 
435 aa  410  1e-113  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_0787  branched chain amino acid ABC transporter periplasmic ligand-binding protein  54.57 
 
 
435 aa  409  1e-113  Burkholderia ambifaria AMMD  Bacteria  normal  0.238628  n/a   
 
 
-
 
NC_008825  Mpe_A0697  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  54.21 
 
 
425 aa  405  1.0000000000000001e-112  Methylibium petroleiphilum PM1  Bacteria  normal  0.951166  normal 
 
 
-
 
NC_008820  P9303_29741  putative urea ABC transporter, substrate binding protein  55.41 
 
 
431 aa  405  1.0000000000000001e-112  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_007651  BTH_I1504  urea/short-chain amide ABC transporter, periplasmic urea/short-chain amide-binding protein  53.32 
 
 
435 aa  408  1.0000000000000001e-112  Burkholderia thailandensis E264  Bacteria  decreased coverage  0.00196796  n/a   
 
 
-
 
NC_008786  Veis_3211  twin-arginine translocation pathway signal  54.62 
 
 
420 aa  405  1.0000000000000001e-112  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.35137  normal  0.840301 
 
 
-
 
NC_011884  Cyan7425_0810  putative PAS/PAC sensor protein  50.13 
 
 
840 aa  402  1e-111  Cyanothece sp. PCC 7425  Bacteria  normal  0.643579  normal  0.828908 
 
 
-
 
NC_009076  BURPS1106A_3103  putative amino acid ABC transporter, periplasmic amino acid-binding protein  53.05 
 
 
435 aa  404  1e-111  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4078  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  51.61 
 
 
414 aa  402  1e-111  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.749846  n/a   
 
 
-
 
NC_008836  BMA10229_A2565  putative amino acid ABC transporter, periplasmic amino acid-binding protein  52.79 
 
 
435 aa  404  1e-111  Burkholderia mallei NCTC 10229  Bacteria  decreased coverage  0.000125255  n/a   
 
 
-
 
NC_006348  BMA2176  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein, putative  52.79 
 
 
435 aa  404  1e-111  Burkholderia mallei ATCC 23344  Bacteria  normal  0.253407  n/a   
 
 
-
 
NC_007434  BURPS1710b_3127  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  53.05 
 
 
435 aa  404  1e-111  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3381  twin-arginine translocation pathway signal  54.38 
 
 
419 aa  402  1e-111  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3881  putative aliphatic amidase expression-regulating protein  50.95 
 
 
411 aa  402  1e-111  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A3683  branched chain amino acid ABC transporter periplasmic ligand-binding protein  50.37 
 
 
432 aa  402  1e-111  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.277595 
 
 
-
 
NC_009080  BMA10247_2048  putative amino acid ABC transporter, periplasmic amino acid-binding protein  52.79 
 
 
435 aa  404  1e-111  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0410415  n/a   
 
 
-
 
NC_011666  Msil_2007  urea ABC transporter, urea binding protein  53.76 
 
 
405 aa  404  1e-111  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010681  Bphyt_0954  urea ABC transporter, urea binding protein  50.87 
 
 
431 aa  404  1e-111  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_3067  putative amino acid ABC transporter, periplasmic amino acid-binding protein  53.05 
 
 
435 aa  404  1e-111  Burkholderia pseudomallei 668  Bacteria  normal  0.656729  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0732  putative amino acid ABC transporter, periplasmic amino acid-binding protein  52.79 
 
 
435 aa  404  1e-111  Burkholderia mallei SAVP1  Bacteria  normal  0.909457  n/a   
 
 
-
 
NC_007513  Syncc9902_2250  putative urea ABC transporter, urea binding protein  51.22 
 
 
431 aa  399  9.999999999999999e-111  Synechococcus sp. CC9902  Bacteria  normal  0.582147  n/a   
 
 
-
 
NC_008781  Pnap_0997  twin-arginine translocation pathway signal  52.63 
 
 
427 aa  396  1e-109  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1443  urea ABC transporter, urea binding protein  53.21 
 
 
420 aa  397  1e-109  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1393  twin-arginine translocation pathway signal  53.19 
 
 
428 aa  395  1e-109  Polaromonas sp. JS666  Bacteria  normal  0.656328  normal  0.386042 
 
 
-
 
NC_009485  BBta_0654  branched chain amino-acid ABC transporter substrate-binding protein  53.7 
 
 
391 aa  395  1e-109  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.379667 
 
 
-
 
NC_008752  Aave_3500  twin-arginine translocation pathway signal  52.38 
 
 
420 aa  394  1e-108  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.421594 
 
 
-
 
NC_011138  MADE_00881  ABC-type branched-chain amino acid transport system, periplasmic component  53.93 
 
 
403 aa  395  1e-108  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B1711  branched chain amino acid ABC transporter periplasmic ligand-binding protein  49.5 
 
 
421 aa  393  1e-108  Burkholderia xenovorans LB400  Bacteria  normal  0.0299695  normal 
 
 
-
 
NC_010581  Bind_0976  urea ABC transporter, urea binding protein  53.08 
 
 
426 aa  392  1e-108  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_3112  urea ABC transporter, urea binding protein  50.41 
 
 
416 aa  392  1e-108  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3864  amide-urea binding protein  52.67 
 
 
420 aa  394  1e-108  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.601855  normal 
 
 
-
 
NC_008340  Mlg_0188  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative  50.79 
 
 
444 aa  395  1e-108  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3145  urea ABC transporter, urea binding protein  50.13 
 
 
422 aa  389  1e-107  Variovorax paradoxus S110  Bacteria  normal  0.770654  n/a   
 
 
-
 
NC_007778  RPB_1252  amide-urea binding protein  52.14 
 
 
392 aa  390  1e-107  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0854371  normal  0.451875 
 
 
-
 
NC_007948  Bpro_0564  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  52.33 
 
 
420 aa  391  1e-107  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4012  urea ABC transporter, urea binding protein  51.72 
 
 
422 aa  390  1e-107  Variovorax paradoxus S110  Bacteria  normal  0.394915  n/a   
 
 
-
 
NC_008816  A9601_08881  putative urea ABC transporter, substrate binding protein  53.02 
 
 
425 aa  386  1e-106  Prochlorococcus marinus str. AS9601  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1202  putative urea/short-chain amide-binding signal peptide protein  50.26 
 
 
419 aa  385  1e-106  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_5512  ABC transporter substrate-binding protein  51.65 
 
 
422 aa  386  1e-106  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.115941  normal  0.320522 
 
 
-
 
NC_009654  Mmwyl1_0948  branched-chain amino acid ABC transporter, putative  52.57 
 
 
427 aa  387  1e-106  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A3587  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  52.01 
 
 
418 aa  382  1e-105  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_2975  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  51.49 
 
 
416 aa  384  1e-105  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_010725  Mpop_1139  urea ABC transporter, urea binding protein  51.1 
 
 
413 aa  382  1e-105  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4184  ABC transporter periplasmic solute-binding protein precursor  52.09 
 
 
430 aa  384  1e-105  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.11561 
 
 
-
 
NC_010510  Mrad2831_6186  urea ABC transporter, urea binding protein  51.65 
 
 
410 aa  382  1e-105  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.411723  normal  0.830735 
 
 
-
 
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