Gene Lcho_1084 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1084 
Symbol 
ID6161523 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1156020 
End bp1157297 
Gene Length1278 bp 
Protein Length425 aa 
Translation table11 
GC content62% 
IMG OID641663838 
Producturea ABC transporter, urea binding protein 
Protein accessionYP_001790118 
Protein GI171057769 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID[TIGR03407] urea ABC transporter, urea binding protein 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTCTT CCCGTCGCAC GTTTGCCCAA CGCCTGACCG CCGTCACGCT CGGCGTGGCC 
GCCATCAGCC TGCCCCTGCT CGCCCAGGCC GCCGACACCA TCAAGGTGGG CGTGCTGCAC
TCGCTGTCGG GCACGATGGC GATCTCGGAA ACGGTGCTCA AGGACACCGT GCTGATGGCG
ATCGACGAGA TCAACGCCAA GGGCGGTCTG CTCGGCAAGA AGCTCGAGCC GGTGGTGGTC
GACCCCGCAT CCAACTGGCC GCTGTTCGCC GAAAAGGCCA AGCAGCTGCT GACGCAGGAC
AAGGTCGCCG TGACCTTCGG CTGCTGGACC TCGGTGAGCC GCAAGTCGGT GCTGCCGGTC
TATGAAGAAT TGAACGGCAT GCTGTTCTAC CCCGTCCAAT ACGAGGGCGA AGAGCTCAGC
AAGAACGTGT TCTACACCGG TGCTGCGCCG AATCAGCAAG CGATCCCCGC GGTCGAGTAC
CTGATGAGCA AGGACGGCGG CTCGGCCAAG CGCTTCGTGC TGCTGGGCAC CGACTACGTC
TACCCGCGCA CCACCAACAA GATCCTGCGC GCCTTCCTGA AAGCCAAGGG CGTGAAGGAA
GAAGACATCA TCGAGGAGTA CACCCCGTTC GGTCACTCCG ACTACCAGTC GATCATCGCC
AAGATCAAGA AGTTCGCTTC CGAAGGCAAG AAGACTGCCG TGGTGTCGAC CATCAATGGC
GACTCCAACG TGCCCTTCTA CAAGGAACTC GGCAACCAGG GCCTGAAGGC GACCGACGTG
CCGGTGGTGG CTTTCTCGGT GGGTGAAGAA GAGCTGCGTG GCGTGGACAC CAAGCCGCTG
GTGGGCCACC TGGCTGCATG GAACTACTTC ATGAGCGTGA AGAACCCGGC CAACACCGAG
TTCGTCAAGA AGTGGAGCGA GTACGCCAAG GCCAAGAAGA TCCCCGGCCA CATGGACAAG
CCGCTGACCA ACGACCCGAT GGAAGCCACC TACATCGGCG TGCACATGTG GGCCCAGGCC
GTCACCAAGG CCAAGAGCAC CGACACCGAC AAGGTGATCG CGGCGATGGC CGGCCAGACC
TTCAAGGCGC CGGGTGGTTT CACCAGCACG ATGGATAAGG AAAACCATCA CCTGCACAAG
CCCGTGTTCA TCGGCGAAAT CAAGGCCGAC GGCCAGTTCA ACGTGGTGTG GAAGACCCCG
GGCCCGGTCG TGGCCGACCC GTGGAGCGAC TACATCGCCG AGAACAAGGG CAAGAAGAAC
GTGCCGGAAA AGAAGTAA
 
Protein sequence
MKSSRRTFAQ RLTAVTLGVA AISLPLLAQA ADTIKVGVLH SLSGTMAISE TVLKDTVLMA 
IDEINAKGGL LGKKLEPVVV DPASNWPLFA EKAKQLLTQD KVAVTFGCWT SVSRKSVLPV
YEELNGMLFY PVQYEGEELS KNVFYTGAAP NQQAIPAVEY LMSKDGGSAK RFVLLGTDYV
YPRTTNKILR AFLKAKGVKE EDIIEEYTPF GHSDYQSIIA KIKKFASEGK KTAVVSTING
DSNVPFYKEL GNQGLKATDV PVVAFSVGEE ELRGVDTKPL VGHLAAWNYF MSVKNPANTE
FVKKWSEYAK AKKIPGHMDK PLTNDPMEAT YIGVHMWAQA VTKAKSTDTD KVIAAMAGQT
FKAPGGFTST MDKENHHLHK PVFIGEIKAD GQFNVVWKTP GPVVADPWSD YIAENKGKKN
VPEKK