Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1084 |
Symbol | |
ID | 6161523 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1156020 |
End bp | 1157297 |
Gene Length | 1278 bp |
Protein Length | 425 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641663838 |
Product | urea ABC transporter, urea binding protein |
Protein accession | YP_001790118 |
Protein GI | 171057769 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | [TIGR03407] urea ABC transporter, urea binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTCTT CCCGTCGCAC GTTTGCCCAA CGCCTGACCG CCGTCACGCT CGGCGTGGCC GCCATCAGCC TGCCCCTGCT CGCCCAGGCC GCCGACACCA TCAAGGTGGG CGTGCTGCAC TCGCTGTCGG GCACGATGGC GATCTCGGAA ACGGTGCTCA AGGACACCGT GCTGATGGCG ATCGACGAGA TCAACGCCAA GGGCGGTCTG CTCGGCAAGA AGCTCGAGCC GGTGGTGGTC GACCCCGCAT CCAACTGGCC GCTGTTCGCC GAAAAGGCCA AGCAGCTGCT GACGCAGGAC AAGGTCGCCG TGACCTTCGG CTGCTGGACC TCGGTGAGCC GCAAGTCGGT GCTGCCGGTC TATGAAGAAT TGAACGGCAT GCTGTTCTAC CCCGTCCAAT ACGAGGGCGA AGAGCTCAGC AAGAACGTGT TCTACACCGG TGCTGCGCCG AATCAGCAAG CGATCCCCGC GGTCGAGTAC CTGATGAGCA AGGACGGCGG CTCGGCCAAG CGCTTCGTGC TGCTGGGCAC CGACTACGTC TACCCGCGCA CCACCAACAA GATCCTGCGC GCCTTCCTGA AAGCCAAGGG CGTGAAGGAA GAAGACATCA TCGAGGAGTA CACCCCGTTC GGTCACTCCG ACTACCAGTC GATCATCGCC AAGATCAAGA AGTTCGCTTC CGAAGGCAAG AAGACTGCCG TGGTGTCGAC CATCAATGGC GACTCCAACG TGCCCTTCTA CAAGGAACTC GGCAACCAGG GCCTGAAGGC GACCGACGTG CCGGTGGTGG CTTTCTCGGT GGGTGAAGAA GAGCTGCGTG GCGTGGACAC CAAGCCGCTG GTGGGCCACC TGGCTGCATG GAACTACTTC ATGAGCGTGA AGAACCCGGC CAACACCGAG TTCGTCAAGA AGTGGAGCGA GTACGCCAAG GCCAAGAAGA TCCCCGGCCA CATGGACAAG CCGCTGACCA ACGACCCGAT GGAAGCCACC TACATCGGCG TGCACATGTG GGCCCAGGCC GTCACCAAGG CCAAGAGCAC CGACACCGAC AAGGTGATCG CGGCGATGGC CGGCCAGACC TTCAAGGCGC CGGGTGGTTT CACCAGCACG ATGGATAAGG AAAACCATCA CCTGCACAAG CCCGTGTTCA TCGGCGAAAT CAAGGCCGAC GGCCAGTTCA ACGTGGTGTG GAAGACCCCG GGCCCGGTCG TGGCCGACCC GTGGAGCGAC TACATCGCCG AGAACAAGGG CAAGAAGAAC GTGCCGGAAA AGAAGTAA
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Protein sequence | MKSSRRTFAQ RLTAVTLGVA AISLPLLAQA ADTIKVGVLH SLSGTMAISE TVLKDTVLMA IDEINAKGGL LGKKLEPVVV DPASNWPLFA EKAKQLLTQD KVAVTFGCWT SVSRKSVLPV YEELNGMLFY PVQYEGEELS KNVFYTGAAP NQQAIPAVEY LMSKDGGSAK RFVLLGTDYV YPRTTNKILR AFLKAKGVKE EDIIEEYTPF GHSDYQSIIA KIKKFASEGK KTAVVSTING DSNVPFYKEL GNQGLKATDV PVVAFSVGEE ELRGVDTKPL VGHLAAWNYF MSVKNPANTE FVKKWSEYAK AKKIPGHMDK PLTNDPMEAT YIGVHMWAQA VTKAKSTDTD KVIAAMAGQT FKAPGGFTST MDKENHHLHK PVFIGEIKAD GQFNVVWKTP GPVVADPWSD YIAENKGKKN VPEKK
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