| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4012 |
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| Symbol | |
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| ID | 7974577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4256500 |
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| End bp | 4257768 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644794598 |
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| Product | urea ABC transporter, urea binding protein |
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| Protein accession | YP_002945892 |
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| Protein GI | 239816982 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | [TIGR03407] urea ABC transporter, urea binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.394915 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACGTC GTTTCACACT CAAGGCGCTC ACCGCCGCCG TCGCCCTGGC CAGCATCTCC
GCTGCGCCGG CCTTTGCCGC CGACACCATC AAGGTCGGCG TGCTGCACTC GCTGTCGGGC
ACGATGGCCA TTTCGGAAAC CGTGTTGAAA GACACGGTGC TGATGGCCAT CGACGACATC
AACAAGAAGG GCGGCGTGCT GGGCAAGCAG CTCGAGCCCG TGGTGGTCGA CCCGGCGTCC
AACTGGCCGC TGTTCGCAGA AAAGACCAAG CAGCTGCTCG GCCAGGACAA GGTCTCGGTG
ATCTTCGGCT GCTGGACCTC GGTGTCGCGC AAGTCGGTGC TGCCGGTGGT CGAGGAAATG
AACGGCCTCT TGTTCTACCC CGTGCAGTAC GAGGGCGAAG AGCTCAGCAA GAACGTGTTC
TACACCGGCG CCGCGCCCAA CCAGCAGGCC ATTCCGGCGG TCGACTACCT GATGAGCAAG
GAAGGCGGCG GTGCCAAGCG CTGGGTGCTG CTGGGCACCG ACTATGTCTA CCCCCGCACC
ACCAACAAGA TCCTGCGCGC CTACCTCAAG AGCAAGGGCG TGAAGGACAC CGACATCGAC
GAGAAGTACA CCCCCTTCGG CCACAGCGAC TACCAGACCA TCGTTGCCGA CATCAAGAAG
TTCTCCTCGG GCGGCAAGAC CGCGGTGGTC TCGACCATCA ACGGCGACTC GAACGTGCCC
TTCTACAAGG AACTCGGCAA CGCAGGCCTC AAGGCCAAGG ACGTGCCGGT GGTGGCCTTC
TCGGTGGGCG AGGAAGAACT GCGCGGCGTG GACACCAAGC CGCTGGTGGG CCACCTGGCT
GCATGGAACT ACTTCATGTC GATCAAGAAC CCGACCAACA CCGCGTTCAT CAAGCAGTGG
AGCGACTACG CCAAGGCCAA GAACATCGCC GGCCACAAGG ACAAGCCGCT CACCAACGAC
CCGATGGAAG CCACCTGGAT CGGCATCCAC ATGTGGAAGC AGGCCGTGGA GAAGGCCAAG
AGCACCGACA CCGACAAGGT GATCGCGGCG ATGGCCGGCC AGACCTTCAC GGCGCCCTCG
GGCATCGTCT CGAAGATGGA CGAGAAGAAC CATCACCTGC ACAAGAGCGT GTTCATCGGC
GAGATCAAGG CCGACGGCCA GTTCAGCGTG GTTTGGAAGA CGCCGGGCCC GGTCAAGGCC
AAGCCGTGGA GCCCGTACAT CGAAGGCAAC GACAAGAAGC CGGACCAGCC GGCCGGCAAG
TCGCTGTAA
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| Protein sequence | MQRRFTLKAL TAAVALASIS AAPAFAADTI KVGVLHSLSG TMAISETVLK DTVLMAIDDI
NKKGGVLGKQ LEPVVVDPAS NWPLFAEKTK QLLGQDKVSV IFGCWTSVSR KSVLPVVEEM
NGLLFYPVQY EGEELSKNVF YTGAAPNQQA IPAVDYLMSK EGGGAKRWVL LGTDYVYPRT
TNKILRAYLK SKGVKDTDID EKYTPFGHSD YQTIVADIKK FSSGGKTAVV STINGDSNVP
FYKELGNAGL KAKDVPVVAF SVGEEELRGV DTKPLVGHLA AWNYFMSIKN PTNTAFIKQW
SDYAKAKNIA GHKDKPLTND PMEATWIGIH MWKQAVEKAK STDTDKVIAA MAGQTFTAPS
GIVSKMDEKN HHLHKSVFIG EIKADGQFSV VWKTPGPVKA KPWSPYIEGN DKKPDQPAGK
SL
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