More than 300 homologs were found in PanDaTox collection
for query gene Rfer_3381 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009080  BMA10247_2048  putative amino acid ABC transporter, periplasmic amino acid-binding protein  72.86 
 
 
435 aa  637    Burkholderia mallei NCTC 10247  Bacteria  normal  0.0410415  n/a   
 
 
-
 
NC_012912  Dd1591_2746  urea ABC transporter, urea binding protein  76.13 
 
 
423 aa  667    Dickeya zeae Ech1591  Bacteria  normal  0.276837  n/a   
 
 
-
 
NC_002947  PP_4841  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative  75.89 
 
 
421 aa  667    Pseudomonas putida KT2440  Bacteria  normal  normal  0.365474 
 
 
-
 
NC_003295  RSc2041  putative urea/short-chain amide-binding signal peptide protein  81.12 
 
 
418 aa  658    Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.300905 
 
 
-
 
NC_010501  PputW619_4633  urea ABC transporter, urea binding protein  76.37 
 
 
421 aa  670    Pseudomonas putida W619  Bacteria  normal  0.688874  normal  0.0837107 
 
 
-
 
NC_010682  Rpic_2193  urea ABC transporter, urea binding protein  79.86 
 
 
418 aa  673    Ralstonia pickettii 12J  Bacteria  normal  normal  0.200796 
 
 
-
 
NC_004578  PSPTO_4885  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  76.61 
 
 
421 aa  671    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3211  twin-arginine translocation pathway signal  89.76 
 
 
420 aa  757    Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.35137  normal  0.840301 
 
 
-
 
NC_006348  BMA2176  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein, putative  72.86 
 
 
435 aa  637    Burkholderia mallei ATCC 23344  Bacteria  normal  0.253407  n/a   
 
 
-
 
NC_012791  Vapar_4012  urea ABC transporter, urea binding protein  92.38 
 
 
422 aa  796    Variovorax paradoxus S110  Bacteria  normal  0.394915  n/a   
 
 
-
 
NC_007005  Psyr_4426  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  77.8 
 
 
421 aa  681    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.171999 
 
 
-
 
NC_010322  PputGB1_4898  urea ABC transporter, urea binding protein  76.37 
 
 
421 aa  670    Pseudomonas putida GB-1  Bacteria  normal  normal  0.0308389 
 
 
-
 
NC_007298  Daro_1443  twin-arginine translocation pathway signal  82.82 
 
 
420 aa  704    Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2161  urea ABC transporter, urea binding protein  77.14 
 
 
422 aa  669    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.269161  n/a   
 
 
-
 
NC_009074  BURPS668_3067  putative amino acid ABC transporter, periplasmic amino acid-binding protein  73.1 
 
 
435 aa  637    Burkholderia pseudomallei 668  Bacteria  normal  0.656729  n/a   
 
 
-
 
NC_007347  Reut_A0986  twin-arginine translocation pathway signal  76.74 
 
 
418 aa  647    Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3127  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  73.1 
 
 
435 aa  637    Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A0697  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  86.43 
 
 
425 aa  699    Methylibium petroleiphilum PM1  Bacteria  normal  0.951166  normal 
 
 
-
 
NC_007492  Pfl01_0590  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  75.42 
 
 
421 aa  663    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A4014  branched chain amino acid ABC transporter periplasmic ligand-binding protein  76.13 
 
 
435 aa  654    Burkholderia sp. 383  Bacteria  normal  0.0416471  normal  0.65931 
 
 
-
 
NC_010159  YpAngola_A1340  urea ABC transporter urea binding protein  73.75 
 
 
422 aa  662    Yersinia pestis Angola  Bacteria  normal  normal  0.231626 
 
 
-
 
NC_010508  Bcenmc03_0880  urea ABC transporter, urea binding protein  76.61 
 
 
435 aa  654    Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.824913 
 
 
-
 
NC_008785  BMASAVP1_A0732  putative amino acid ABC transporter, periplasmic amino acid-binding protein  72.86 
 
 
435 aa  637    Burkholderia mallei SAVP1  Bacteria  normal  0.909457  n/a   
 
 
-
 
NC_009439  Pmen_0701  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  76.37 
 
 
421 aa  671    Pseudomonas mendocina ymp  Bacteria  normal  0.525993  normal 
 
 
-
 
NC_007651  BTH_I1504  urea/short-chain amide ABC transporter, periplasmic urea/short-chain amide-binding protein  73.57 
 
 
435 aa  642    Burkholderia thailandensis E264  Bacteria  decreased coverage  0.00196796  n/a   
 
 
-
 
NC_009436  Ent638_1988  putative substrate-binding periplasmic transport protein  77.14 
 
 
423 aa  657    Enterobacter sp. 638  Bacteria  normal  normal  0.146215 
 
 
-
 
NC_007908  Rfer_3381  twin-arginine translocation pathway signal  100 
 
 
419 aa  854    Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_3931  urea ABC transporter, urea binding protein  77.11 
 
 
417 aa  663    Thauera sp. MZ1T  Bacteria  normal  0.606906  n/a   
 
 
-
 
NC_009656  PSPA7_5579  hypothetical protein  75.89 
 
 
421 aa  659    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1421  putative substrate-binding periplasmic transport protein  74.7 
 
 
422 aa  658    Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_2873  urea ABC transporter, urea binding protein  73.75 
 
 
422 aa  662    Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.862041  n/a   
 
 
-
 
NC_010551  BamMC406_0798  urea ABC transporter, urea binding protein  75.42 
 
 
435 aa  648    Burkholderia ambifaria MC40-6  Bacteria  normal  0.398503  normal 
 
 
-
 
NC_007948  Bpro_1393  twin-arginine translocation pathway signal  92.64 
 
 
428 aa  793    Polaromonas sp. JS666  Bacteria  normal  0.656328  normal  0.386042 
 
 
-
 
NC_008836  BMA10229_A2565  putative amino acid ABC transporter, periplasmic amino acid-binding protein  72.86 
 
 
435 aa  637    Burkholderia mallei NCTC 10229  Bacteria  decreased coverage  0.000125255  n/a   
 
 
-
 
NC_009076  BURPS1106A_3103  putative amino acid ABC transporter, periplasmic amino acid-binding protein  73.1 
 
 
435 aa  637    Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A3683  branched chain amino acid ABC transporter periplasmic ligand-binding protein  74.16 
 
 
432 aa  649    Burkholderia xenovorans LB400  Bacteria  normal  normal  0.277595 
 
 
-
 
NC_008781  Pnap_0997  twin-arginine translocation pathway signal  94.29 
 
 
427 aa  809    Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0954  urea ABC transporter, urea binding protein  73.38 
 
 
431 aa  645    Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4719  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  75.89 
 
 
421 aa  667    Pseudomonas putida F1  Bacteria  normal  0.14369  normal  0.0383938 
 
 
-
 
NC_009379  Pnuc_1202  putative urea/short-chain amide-binding signal peptide protein  79.03 
 
 
419 aa  635    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1084  urea ABC transporter, urea binding protein  82.9 
 
 
425 aa  702    Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_012856  Rpic12D_1870  urea ABC transporter, urea binding protein  80.14 
 
 
418 aa  672    Ralstonia pickettii 12D  Bacteria  normal  0.510403  normal  0.303887 
 
 
-
 
NC_010084  Bmul_2482  urea ABC transporter, urea binding protein  75.42 
 
 
435 aa  650    Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0952  twin-arginine translocation pathway signal  77.64 
 
 
419 aa  659    Cupriavidus metallidurans CH34  Bacteria  normal  0.553309  normal  0.40345 
 
 
-
 
NC_008060  Bcen_0431  twin-arginine translocation pathway signal  76.61 
 
 
435 aa  654    Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_0787  branched chain amino acid ABC transporter periplasmic ligand-binding protein  75.66 
 
 
435 aa  650    Burkholderia ambifaria AMMD  Bacteria  normal  0.238628  n/a   
 
 
-
 
NC_009708  YpsIP31758_2794  urea ABC transporter, urea binding protein  73.75 
 
 
422 aa  661    Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_64270  hypothetical protein  75.66 
 
 
421 aa  658    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.00916173  normal 
 
 
-
 
NC_008542  Bcen2424_0910  ABC-type branched-chain amino acid transport system periplasmic component  76.61 
 
 
435 aa  654    Burkholderia cenocepacia HI2424  Bacteria  normal  0.988343  n/a   
 
 
-
 
NC_010622  Bphy_2251  urea ABC transporter, urea binding protein  75.12 
 
 
433 aa  656    Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_3500  twin-arginine translocation pathway signal  91.43 
 
 
420 aa  763    Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.421594 
 
 
-
 
NC_013421  Pecwa_2500  urea ABC transporter, urea binding protein  76.9 
 
 
422 aa  667    Pectobacterium wasabiae WPP163  Bacteria  normal  0.172849  n/a   
 
 
-
 
NC_007969  Pcryo_0994  branched-chain amino acid ABC transporter periplasmic substrate-binding protein  74.21 
 
 
454 aa  601  1.0000000000000001e-171  Psychrobacter cryohalolentis K5  Bacteria  normal  0.603537  normal 
 
 
-
 
NC_008576  Mmc1_1019  ABC-type branched-chain amino acid transport system, periplasmic component  69.59 
 
 
424 aa  571  1.0000000000000001e-162  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.18333 
 
 
-
 
NC_007925  RPC_3702  branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor  70.9 
 
 
439 aa  562  1.0000000000000001e-159  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1443  putative UreA short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor  70.63 
 
 
431 aa  552  1e-156  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.000157117 
 
 
-
 
NC_009654  Mmwyl1_0948  branched-chain amino acid ABC transporter, putative  69.21 
 
 
427 aa  550  1e-155  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4191  urea ABC transporter, urea binding protein  72.75 
 
 
440 aa  548  1e-155  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7018  branched chain amino-acid ABC transporter substrate-binding protein  72.49 
 
 
440 aa  546  1e-154  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.450777 
 
 
-
 
NC_007778  RPB_1794  urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor  71.72 
 
 
440 aa  544  1e-154  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.326487 
 
 
-
 
NC_007958  RPD_3510  twin-arginine translocation pathway signal  72.24 
 
 
440 aa  546  1e-154  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.118582  normal 
 
 
-
 
NC_011138  MADE_00881  ABC-type branched-chain amino acid transport system, periplasmic component  70.5 
 
 
403 aa  540  9.999999999999999e-153  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4149  putative urea short-chain amide or branched-chain amino acid uptake ABC transporter  69.77 
 
 
434 aa  537  1e-151  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_2620  putative UreA short-chain amide  67.91 
 
 
428 aa  536  1e-151  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0882904 
 
 
-
 
NC_008340  Mlg_0188  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative  61.5 
 
 
444 aa  537  1e-151  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_2986  ABC transporter for branched chain amino acids substrate binding protein  66.83 
 
 
425 aa  532  1e-150  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.199519 
 
 
-
 
NC_009620  Smed_4184  ABC transporter periplasmic solute-binding protein precursor  66.91 
 
 
430 aa  533  1e-150  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.11561 
 
 
-
 
NC_011894  Mnod_4605  urea ABC transporter, urea binding protein  69.35 
 
 
430 aa  528  1e-149  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0446253  n/a   
 
 
-
 
NC_007912  Sde_0226  urea/short-chain amide ABC transporter, periplasmic urea/short-chain amide-binding protein  67.08 
 
 
436 aa  524  1e-148  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.867108 
 
 
-
 
NC_008740  Maqu_3001  ABC-type branched-chain amino acid transport system, periplasmic component  65.11 
 
 
433 aa  521  1e-146  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_2695  putative aliphatic amidase expression-regulating protein  63.75 
 
 
452 aa  518  1e-146  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.92573  normal 
 
 
-
 
NC_013422  Hneap_1103  urea ABC transporter, urea binding protein  63.13 
 
 
433 aa  517  1.0000000000000001e-145  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3494  ABC transporter substrate binding protein (urea/amide)  64.95 
 
 
429 aa  514  1e-144  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2313  putative urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic protein precursor  62.66 
 
 
443 aa  496  1e-139  Chromohalobacter salexigens DSM 3043  Bacteria  hitchhiker  0.00688905  n/a   
 
 
-
 
NC_011369  Rleg2_3063  urea ABC transporter, urea binding protein  64.62 
 
 
430 aa  491  9.999999999999999e-139  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.696445 
 
 
-
 
NC_008255  CHU_1255  branched-chain amino acid ABC transporter, periplasmic protein  61.64 
 
 
445 aa  490  1e-137  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.857524 
 
 
-
 
NC_007493  RSP_0301  ABC branched chain amino acid transporter, substrate binding protein  64.21 
 
 
426 aa  486  1e-136  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.176929  n/a   
 
 
-
 
NC_012850  Rleg_3318  urea ABC transporter, urea binding protein  64.3 
 
 
430 aa  488  1e-136  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.490693  normal  0.457641 
 
 
-
 
NC_009049  Rsph17029_1945  ABC branched chain amino acid transporter, substrate binding protein  64.21 
 
 
426 aa  486  1e-136  Rhodobacter sphaeroides ATCC 17029  Bacteria  hitchhiker  0.00107842  normal 
 
 
-
 
NC_009428  Rsph17025_0993  ABC-type branched-chain amino acid transport systems periplasmic component-like protein  63.95 
 
 
426 aa  483  1e-135  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4017  ABC branched chain amino acid transporter, substrate binding protein  63.49 
 
 
428 aa  464  1e-129  Paracoccus denitrificans PD1222  Bacteria  normal  0.568826  normal 
 
 
-
 
NC_010571  Oter_4229  hypothetical protein  56.12 
 
 
426 aa  426  1e-118  Opitutus terrae PB90-1  Bacteria  normal  0.527328  normal  0.405756 
 
 
-
 
NC_009012  Cthe_1823  extracellular ligand-binding receptor  54.38 
 
 
419 aa  402  1e-111  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.158541  n/a   
 
 
-
 
NC_013411  GYMC61_2778  urea ABC transporter, urea binding protein  54.67 
 
 
418 aa  397  1e-109  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_2862  urea ABC transporter, urea binding protein  51.09 
 
 
443 aa  387  1e-106  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008312  Tery_0130  extracellular ligand-binding receptor  51.17 
 
 
423 aa  382  1e-105  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0243473 
 
 
-
 
NC_007413  Ava_4361  extracellular ligand-binding receptor  49.49 
 
 
438 aa  374  1e-102  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000367621  normal 
 
 
-
 
NC_011884  Cyan7425_2260  urea ABC transporter, urea binding protein  50 
 
 
440 aa  366  1e-100  Cyanothece sp. PCC 7425  Bacteria  normal  0.411735  normal 
 
 
-
 
NC_008726  Mvan_2596  extracellular ligand-binding receptor  47.15 
 
 
402 aa  360  2e-98  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.677611 
 
 
-
 
NC_013739  Cwoe_3498  urea ABC transporter, urea binding protein  46.94 
 
 
419 aa  359  5e-98  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0969064 
 
 
-
 
NC_008146  Mmcs_2291  extracellular ligand-binding receptor  48.26 
 
 
421 aa  356  2.9999999999999997e-97  Mycobacterium sp. MCS  Bacteria  normal  0.553297  n/a   
 
 
-
 
NC_008705  Mkms_2338  extracellular ligand-binding receptor  48.26 
 
 
421 aa  356  2.9999999999999997e-97  Mycobacterium sp. KMS  Bacteria  normal  normal  0.267805 
 
 
-
 
NC_013510  Tcur_3240  urea ABC transporter, urea binding protein  48.81 
 
 
405 aa  356  3.9999999999999996e-97  Thermomonospora curvata DSM 43183  Bacteria  decreased coverage  0.00360419  n/a   
 
 
-
 
NC_014151  Cfla_0700  urea ABC transporter, urea binding protein  49.61 
 
 
463 aa  354  2e-96  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0172324  hitchhiker  0.0000000649369 
 
 
-
 
NC_009077  Mjls_2330  extracellular ligand-binding receptor  47.72 
 
 
421 aa  352  5e-96  Mycobacterium sp. JLS  Bacteria  normal  0.26288  normal  0.0264278 
 
 
-
 
NC_009338  Mflv_3798  extracellular ligand-binding receptor  46.27 
 
 
402 aa  352  8e-96  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_1674  urea ABC transporter, urea binding protein  47.75 
 
 
407 aa  345  1e-93  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3780  putative aliphatic amidase expression-regulating protein  45.48 
 
 
404 aa  340  2.9999999999999998e-92  Shewanella woodyi ATCC 51908  Bacteria  normal  0.583472  hitchhiker  0.00053565 
 
 
-
 
NC_009831  Ssed_3881  putative aliphatic amidase expression-regulating protein  43.2 
 
 
411 aa  338  9.999999999999999e-92  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008820  P9303_29741  putative urea ABC transporter, substrate binding protein  47.78 
 
 
431 aa  333  5e-90  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>