More than 300 homologs were found in PanDaTox collection
for query gene RPD_3789 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007958  RPD_3789  response regulator receiver  100 
 
 		 228 aa  459  9.999999999999999e-129  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0916709 
 
 
-
 
NC_007778  RPB_4035  two component LuxR family transcriptional regulator  94.3 
 
 		 228 aa  438  9.999999999999999e-123  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_1676  two component transcriptional regulator, LuxR family  89.91 
 
 		 228 aa  423  1e-117  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007925  RPC_3790  two component LuxR family transcriptional regulator  74.66 
 
 		 226 aa  340  8e-93  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007778  RPB_4449  two component LuxR family transcriptional regulator  72.89 
 
 		 230 aa  337  8e-92  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.683214 
 
 
-
 
NC_007958  RPD_2401  response regulator receiver  76.53 
 
 		 230 aa  334  9e-91  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0808908 
 
 
-
 
NC_011004  Rpal_3423  two component transcriptional regulator, LuxR family  66.81 
 
 		 235 aa  307  9e-83  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.324081  n/a   
 
 
-
 
NC_009485  BBta_3079  two component LuxR family transcriptional regulator  63.88 
 
 		 233 aa  292  3e-78  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011666  Msil_2019  two component transcriptional regulator, LuxR family  62.67 
 
 		 223 aa  273  2.0000000000000002e-72  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  51.64 
 
 		 222 aa  224  9e-58  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.280021 
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  52.56 
 
 		 221 aa  221  9.999999999999999e-57  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_5717  two component LuxR family transcriptional regulator  50.7 
 
 		 220 aa  210  1e-53  Methylobacterium sp. 4-46  Bacteria  normal  0.873964  hitchhiker  0.00405289 
 
 
-
 
NC_007778  RPB_4442  response regulator receiver domain-containing protein  71.64 
 
 		 172 aa  202  3e-51  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.591595 
 
 
-
 
NC_007958  RPD_2393  response regulator receiver  57.78 
 
 		 172 aa  202  3e-51  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.820012  normal  0.124287 
 
 
-
 
NC_011894  Mnod_0855  two component transcriptional regulator, LuxR family  47.25 
 
 		 223 aa  192  2e-48  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.082304  n/a   
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  42.99 
 
 		 217 aa  187  9e-47  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_011894  Mnod_0851  two component transcriptional regulator, LuxR family  42.53 
 
 		 232 aa  176  2e-43  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  43.66 
 
 		 218 aa  170  1e-41  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  43.19 
 
 		 218 aa  169  3e-41  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  43.19 
 
 		 218 aa  169  3e-41  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  43.58 
 
 		 218 aa  167  1e-40  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_4860  two component transcriptional regulator, LuxR family  44.55 
 
 		 236 aa  166  4e-40  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.142587 
 
 
-
 
NC_010725  Mpop_0347  two component transcriptional regulator, LuxR family  41.2 
 
 		 222 aa  164  9e-40  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_4712  two component transcriptional regulator, LuxR family  43.64 
 
 		 236 aa  163  2.0000000000000002e-39  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.37561  normal  1 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  40.93 
 
 		 228 aa  163  2.0000000000000002e-39  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_1668  response regulator receiver  40.74 
 
 		 222 aa  163  2.0000000000000002e-39  Methylobacterium extorquens PA1  Bacteria  normal  0.679138  normal  1 
 
 
-
 
NC_010172  Mext_4343  response regulator receiver  43.64 
 
 		 236 aa  163  2.0000000000000002e-39  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_1985  two component transcriptional regulator, LuxR family  40.74 
 
 		 222 aa  163  2.0000000000000002e-39  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  39.15 
 
 		 213 aa  163  3e-39  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  41.31 
 
 		 213 aa  163  3e-39  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  37.38 
 
 		 215 aa  162  6e-39  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  37.33 
 
 		 224 aa  159  3e-38  Dehalococcoides sp. VS  Bacteria  normal  1  n/a   
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  36.87 
 
 		 224 aa  159  4e-38  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_002936  DET0663  LuxR family DNA-binding response regulator  36.87 
 
 		 224 aa  158  8e-38  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_002936  DET0697  LuxR family DNA-binding response regulator  36.87 
 
 		 224 aa  158  8e-38  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_1205  two component transcriptional regulator, LuxR family  36.62 
 
 		 212 aa  157  1e-37  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009483  Gura_2780  two component LuxR family transcriptional regulator  40.65 
 
 		 226 aa  157  1e-37  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_014148  Plim_3764  response regulator receiver  41.59 
 
 		 217 aa  156  2e-37  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.321181  n/a   
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  38.68 
 
 		 213 aa  156  3e-37  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  43.06 
 
 		 212 aa  155  3e-37  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  36.74 
 
 		 218 aa  153  2e-36  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  38.25 
 
 		 218 aa  152  4e-36  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal  1 
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  39.05 
 
 		 214 aa  150  1e-35  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  40.74 
 
 		 221 aa  149  3e-35  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_013739  Cwoe_1233  two component transcriptional regulator, LuxR family  39.35 
 
 		 220 aa  149  4e-35  Conexibacter woesei DSM 14684  Bacteria  normal  0.681342  normal  0.792953 
 
 
-
 
NC_013093  Amir_5893  two component transcriptional regulator, LuxR family  40.55 
 
 		 218 aa  148  7e-35  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_010571  Oter_0829  two component LuxR family transcriptional regulator  36.57 
 
 		 219 aa  145  4.0000000000000006e-34  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.0121621 
 
 
-
 
NC_013739  Cwoe_1298  two component transcriptional regulator, LuxR family  36.89 
 
 		 228 aa  145  5e-34  Conexibacter woesei DSM 14684  Bacteria  normal  0.70055  normal  1 
 
 
-
 
NC_013235  Namu_0523  two component transcriptional regulator, LuxR family  38.68 
 
 		 230 aa  144  8.000000000000001e-34  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  38.32 
 
 		 228 aa  144  8.000000000000001e-34  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_007614  Nmul_A1235  two component LuxR family transcriptional regulator  38.05 
 
 		 211 aa  144  1e-33  Nitrosospira multiformis ATCC 25196  Bacteria  normal  1  n/a   
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  35.19 
 
 		 217 aa  144  2e-33  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  37.5 
 
 		 214 aa  143  3e-33  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_002939  GSU0682  LuxR family DNA-binding response regulator  38.39 
 
 		 215 aa  142  4e-33  Geobacter sulfurreducens PCA  Bacteria  normal  0.874366  n/a   
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  34.27 
 
 		 213 aa  142  4e-33  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_012918  GM21_1103  two component transcriptional regulator, LuxR family  35.21 
 
 		 216 aa  142  4e-33  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_013510  Tcur_0154  two component transcriptional regulator, LuxR family  37.73 
 
 		 244 aa  142  6e-33  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_007404  Tbd_1290  two component LuxR family transcriptional regulator  36.79 
 
 		 209 aa  142  6e-33  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.542915  normal  1 
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  38.97 
 
 		 222 aa  142  6e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  37.26 
 
 		 224 aa  141  7e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013739  Cwoe_4976  two component transcriptional regulator, LuxR family  41.4 
 
 		 218 aa  141  7e-33  Conexibacter woesei DSM 14684  Bacteria  normal  0.289575  normal  0.034027 
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  35.68 
 
 		 223 aa  141  7e-33  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  34.76 
 
 		 216 aa  141  8e-33  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  38.1 
 
 		 207 aa  141  9e-33  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_002976  SERP1981  transcriptional regulatory protein DegU, putative  35.94 
 
 		 218 aa  140  9.999999999999999e-33  Staphylococcus epidermidis RP62A  Bacteria  normal  1  n/a   
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  34.6 
 
 		 206 aa  140  9.999999999999999e-33  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013530  Xcel_0606  two component transcriptional regulator, LuxR family  38.68 
 
 		 212 aa  140  9.999999999999999e-33  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  38.68 
 
 		 211 aa  140  9.999999999999999e-33  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  0.0337978 
 
 
-
 
NC_009455  DehaBAV1_0945  two component LuxR family transcriptional regulator  36.67 
 
 		 232 aa  141  9.999999999999999e-33  Dehalococcoides sp. BAV1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_1526  two component transcriptional regulator, LuxR family  37.67 
 
 		 215 aa  140  9.999999999999999e-33  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.88337  normal  1 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  36.62 
 
 		 224 aa  140  1.9999999999999998e-32  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_010682  Rpic_3729  two component transcriptional regulator, LuxR family  36.24 
 
 		 214 aa  140  1.9999999999999998e-32  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008576  Mmc1_2093  two component LuxR family transcriptional regulator  38.03 
 
 		 206 aa  140  1.9999999999999998e-32  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000328625  normal  0.180863 
 
 
-
 
NC_010718  Nther_0648  two component transcriptional regulator, LuxR family  38.76 
 
 		 215 aa  140  1.9999999999999998e-32  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013205  Aaci_0385  two component transcriptional regulator, LuxR family  38.6 
 
 		 224 aa  139  3e-32  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  38.81 
 
 		 214 aa  139  3e-32  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_008009  Acid345_1691  two component LuxR family transcriptional regulator  35.55 
 
 		 208 aa  139  3e-32  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  0.0637899 
 
 
-
 
NC_002936  DET1063  LuxR family DNA-binding response regulator  36.32 
 
 		 232 aa  139  3.9999999999999997e-32  Dehalococcoides ethenogenes 195  Bacteria  normal  0.815436  n/a   
 
 
-
 
NC_009727  CBUD_0828  response regulator  40.47 
 
 		 216 aa  139  3.9999999999999997e-32  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.0183204  n/a   
 
 
-
 
NC_009632  SaurJH1_2463  response regulator receiver  34.88 
 
 		 217 aa  139  3.9999999999999997e-32  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009487  SaurJH9_2415  two component LuxR family transcriptional regulator  34.88 
 
 		 217 aa  139  3.9999999999999997e-32  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  1  n/a   
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  38.21 
 
 		 234 aa  138  4.999999999999999e-32  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  38.86 
 
 		 226 aa  139  4.999999999999999e-32  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal  1 
 
 
-
 
NC_008025  Dgeo_0183  two component LuxR family transcriptional regulator  38.68 
 
 		 200 aa  139  4.999999999999999e-32  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.541303  normal  0.654013 
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  35.07 
 
 		 216 aa  138  7e-32  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  36.62 
 
 		 219 aa  138  7e-32  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal  1 
 
 
-
 
NC_010571  Oter_1239  two component LuxR family transcriptional regulator  37.17 
 
 		 196 aa  138  7e-32  Opitutus terrae PB90-1  Bacteria  normal  0.0482404  normal  0.916816 
 
 
-
 
NC_013411  GYMC61_2911  two component transcriptional regulator, LuxR family  35.35 
 
 		 209 aa  138  8.999999999999999e-32  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  38.21 
 
 		 207 aa  137  1e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.966789 
 
 
-
 
NC_003910  CPS_1406  DNA-binding response regulator  35.05 
 
 		 215 aa  137  1e-31  Colwellia psychrerythraea 34H  Bacteria  normal  0.253896  n/a   
 
 
-
 
NC_013552  DhcVS_934  DNA-binding response regulator, LuxR family  35.38 
 
 		 232 aa  137  1e-31  Dehalococcoides sp. VS  Bacteria  normal  0.717523  n/a   
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  33.94 
 
 		 226 aa  137  1e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007947  Mfla_0815  two component LuxR family transcriptional regulator  36.32 
 
 		 213 aa  137  1e-31  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00000180305  normal  1 
 
 
-
 
NC_008146  Mmcs_0590  two component LuxR family transcriptional regulator  38.21 
 
 		 215 aa  137  1e-31  Mycobacterium sp. MCS  Bacteria  normal  1  n/a   
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  37.91 
 
 		 212 aa  137  1e-31  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1168  LuxR family transcriptional regulator  38.97 
 
 		 216 aa  137  1e-31  Coxiella burnetii RSA 331  Bacteria  normal  1  n/a   
 
 
-
 
NC_012856  Rpic12D_3406  two component transcriptional regulator, LuxR family  35.78 
 
 		 214 aa  137  1e-31  Ralstonia pickettii 12D  Bacteria  normal  0.588591  normal  1 
 
 
-
 
NC_008697  Noca_4896  response regulator receiver  38.1 
 
 		 215 aa  137  1e-31  Nocardioides sp. JS614  Bacteria  normal  0.446448  normal  0.220667 
 
 
-
 
NC_008705  Mkms_0603  two component LuxR family transcriptional regulator  38.21 
 
 		 215 aa  137  1e-31  Mycobacterium sp. KMS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009077  Mjls_0581  two component LuxR family transcriptional regulator  38.21 
 
 		 215 aa  137  1e-31  Mycobacterium sp. JLS  Bacteria  normal  1  normal  1 
 
 
-
 
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