Gene Tbd_1290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_1290 
Symbol 
ID3673380 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp1360804 
End bp1361433 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content62% 
IMG OID637709975 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_315048 
Protein GI74317308 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.542915 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCGAG TGCTGATCGC AGACGACCAT GCCGTCGTCC GCCAGGGCCT GCGGCACGTG 
CTGTCCGCCT CGCCCGACAT CGTCGTCGCC GCCGAGGCGG CGGACGGATT CGAGGTGCTC
GAGAAGATCC GCAAGGAGGC CTTCGATCTT GTCTGCCTCG ACCTGTCGAT GCCGAATCTG
AGCGGTATCG ACCTGATCAA GCGGATTAGG CTCGACTGCA CGACCTTGCC GATCCTCGTC
CTCAGCATGC ACAACGAGGC GCAGTTCGCG GCACGCGCGC TGAAGGCAGG CGCGGCCGGC
TATCTGACCA AGGACAGCGA CCCCGAAACG CTGATCGGGG CGATCCGCAA GGTCGCCTCG
GGCCGGAAGT TCATCGACCC GACGCTGGTC GACGAATTGA TCTTCGAAAA AATCCTGACC
GACGAGCGCG CGCCGCACGA GCAACTGTCC GATCGCGAAT TTCAGATCGT CCGGCTGATC
GCGCAGGGCG AATCGCTGAA CCAGATCGCC GACAAGCTCT CGCTCAGCGC CAAGACGATC
AGCACCTACA AGGCGCGAAG CATGCAGAAG CTGGGTATTT CGAACCATAC CGAGCTCGTG
CGCTACGCCA TCGCCCACCA TTGGATATGA
 
Protein sequence
MIRVLIADDH AVVRQGLRHV LSASPDIVVA AEAADGFEVL EKIRKEAFDL VCLDLSMPNL 
SGIDLIKRIR LDCTTLPILV LSMHNEAQFA ARALKAGAAG YLTKDSDPET LIGAIRKVAS
GRKFIDPTLV DELIFEKILT DERAPHEQLS DREFQIVRLI AQGESLNQIA DKLSLSAKTI
STYKARSMQK LGISNHTELV RYAIAHHWI