More than 300 homologs were found in PanDaTox collection
for query gene Daud_1042 on replicon NC_010424
Organism: Candidatus Desulforudis audaxviator MP104C



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010424  Daud_1042  nickel-dependent hydrogenase, large subunit  100 
 
 
485 aa  992    Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.90765  n/a   
 
 
-
 
NC_013385  Adeg_1787  nickel-dependent hydrogenase large subunit  61.33 
 
 
481 aa  622  1e-177  Ammonifex degensii KC4  Bacteria  normal  0.993845  n/a   
 
 
-
 
NC_013385  Adeg_1231  nickel-dependent hydrogenase large subunit  62.06 
 
 
458 aa  610  1e-173  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0110  [Ni/Fe] hydrogenase, group 1, large subunit, putative  50.94 
 
 
526 aa  506  9.999999999999999e-143  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_120  Ni/Fe hydrogenase, large subunit  51.13 
 
 
526 aa  506  9.999999999999999e-143  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0258  nickel-dependent hydrogenase, large subunit  50.75 
 
 
526 aa  502  1e-141  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2135  periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing  48.65 
 
 
488 aa  454  1.0000000000000001e-126  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1969  nickel-dependent hydrogenase large subunit  46.11 
 
 
514 aa  444  1e-123  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.668451  n/a   
 
 
-
 
NC_008751  Dvul_1248  nickel-dependent hydrogenase, large subunit  47.6 
 
 
488 aa  443  1e-123  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.210122 
 
 
-
 
NC_011769  DvMF_0273  nickel-dependent hydrogenase large subunit  45.93 
 
 
488 aa  440  9.999999999999999e-123  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.328721 
 
 
-
 
NC_011830  Dhaf_2742  Hydrogen:quinone oxidoreductase  43.03 
 
 
518 aa  407  1.0000000000000001e-112  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000126046  n/a   
 
 
-
 
NC_008554  Sfum_2952  nickel-dependent hydrogenase, large subunit  40.98 
 
 
546 aa  397  1e-109  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.437472 
 
 
-
 
NC_007517  Gmet_3331  nickel-dependent hydrogenase, large subunit  39.93 
 
 
566 aa  395  1e-108  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_0266  nickel-dependent hydrogenase large subunit  41.11 
 
 
566 aa  393  1e-108  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.322067  normal 
 
 
-
 
NC_011830  Dhaf_3270  nickel-dependent hydrogenase large subunit  42.17 
 
 
517 aa  395  1e-108  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2138  periplasmic (NiFe) hydrogenase, large subunit, isozyme 1  41.82 
 
 
568 aa  391  1e-107  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0122  nickel-dependent hydrogenase, large subunit  39.75 
 
 
564 aa  387  1e-106  Geobacter sulfurreducens PCA  Bacteria  normal  0.254382  n/a   
 
 
-
 
NC_009767  Rcas_3147  nickel-dependent hydrogenase large subunit  38.48 
 
 
570 aa  387  1e-106  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_1940  hydrogen:quinone oxidoreductase  43.23 
 
 
475 aa  387  1e-106  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2320  nickel-dependent hydrogenase, large subunit  38.48 
 
 
570 aa  388  1e-106  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0270  nickel-dependent hydrogenase large subunit  41.42 
 
 
567 aa  384  1e-105  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.11146 
 
 
-
 
NC_013173  Dbac_0766  nickel-dependent hydrogenase large subunit  41.04 
 
 
569 aa  383  1e-105  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0544  nickel-dependent hydrogenase, large subunit  39.47 
 
 
566 aa  384  1e-105  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2055  nickel-dependent hydrogenase large subunit  39.18 
 
 
566 aa  383  1e-105  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1245  nickel-dependent hydrogenase, large subunit  41.71 
 
 
566 aa  385  1e-105  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.11159 
 
 
-
 
NC_009483  Gura_0873  nickel-dependent hydrogenase, large subunit  39.57 
 
 
569 aa  379  1e-104  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_1038  nickel-dependent hydrogenase large subunit  41.45 
 
 
558 aa  380  1e-104  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.368471  n/a   
 
 
-
 
NC_007512  Plut_1447  hydrogenase large chain  38.33 
 
 
572 aa  375  1e-102  Chlorobium luteolum DSM 273  Bacteria  normal  0.333249  normal 
 
 
-
 
NC_011059  Paes_0854  nickel-dependent hydrogenase large subunit  37.81 
 
 
572 aa  370  1e-101  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.255543 
 
 
-
 
NC_011761  AFE_3286  [Ni/Fe] hydrogenase, large subunit  38.72 
 
 
585 aa  370  1e-101  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2884  nickel-dependent hydrogenase large subunit  38.72 
 
 
585 aa  370  1e-101  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.308731  normal 
 
 
-
 
NC_011898  Ccel_1071  nickel-dependent hydrogenase large subunit  38.28 
 
 
470 aa  365  1e-100  Clostridium cellulolyticum H10  Bacteria  normal  0.018808  n/a   
 
 
-
 
NC_011060  Ppha_1861  nickel-dependent hydrogenase large subunit  37.98 
 
 
572 aa  367  1e-100  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_0856  nickel-dependent hydrogenase large subunit  37.8 
 
 
572 aa  364  2e-99  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_0973  nickel-dependent hydrogenase, large subunit  38.34 
 
 
572 aa  363  3e-99  Chlorobium phaeobacteroides DSM 266  Bacteria  decreased coverage  0.000120136  n/a   
 
 
-
 
NC_011149  SeAg_B1633  [Ni/Fe] hydrogenase, large subunit  36.9 
 
 
600 aa  358  8e-98  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A1650  [Ni/Fe] hydrogenase large subunit  36.9 
 
 
600 aa  358  9.999999999999999e-98  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A1798  [Ni/Fe] hydrogenase, large subunit  36.9 
 
 
600 aa  358  9.999999999999999e-98  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.570579  normal 
 
 
-
 
NC_011083  SeHA_C1709  [Ni/Fe] hydrogenase large subunit  36.9 
 
 
600 aa  358  9.999999999999999e-98  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A1642  [Ni/Fe] hydrogenase, large subunit  36.9 
 
 
600 aa  358  9.999999999999999e-98  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.251142  normal 
 
 
-
 
NC_010831  Cphamn1_1592  nickel-dependent hydrogenase large subunit  37.1 
 
 
572 aa  349  8e-95  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.663154  normal 
 
 
-
 
NC_009475  BBta_p0179  uptake hydrogenase large subunit  38.65 
 
 
570 aa  348  9e-95  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_008340  Mlg_2028  nickel-dependent hydrogenase, large subunit  36.43 
 
 
595 aa  347  2e-94  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3771  nickel-dependent hydrogenase, large subunit  36.25 
 
 
597 aa  345  8e-94  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.292608  normal  0.910106 
 
 
-
 
NC_002977  MCA0165  nickel-iron hydrogenase, large subunit  36.1 
 
 
597 aa  345  1e-93  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0497936  n/a   
 
 
-
 
NC_010627  Bphy_7264  nickel-dependent hydrogenase large subunit  35.61 
 
 
596 aa  345  1e-93  Burkholderia phymatum STM815  Bacteria  normal  normal  0.340015 
 
 
-
 
NC_002939  GSU0785  nickel-dependent hydrogenase, large subunit  37 
 
 
560 aa  344  2.9999999999999997e-93  Geobacter sulfurreducens PCA  Bacteria  normal  0.433799  n/a   
 
 
-
 
NC_011004  Rpal_1155  nickel-dependent hydrogenase large subunit  35.25 
 
 
597 aa  343  4e-93  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.295857  n/a   
 
 
-
 
NC_007298  Daro_3988  nickel-dependent hydrogenase, large subunit  35.86 
 
 
598 aa  342  5.999999999999999e-93  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1946  nickel-dependent hydrogenase, large subunit  36.4 
 
 
560 aa  342  7e-93  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1163  nickel-dependent hydrogenase, large subunit  35.65 
 
 
597 aa  340  2.9999999999999998e-92  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.28682  normal 
 
 
-
 
NC_009485  BBta_1997  uptake hydrogenase large subunit precursor  35.6 
 
 
596 aa  340  4e-92  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1266  Ni-Fe hydrogenase large chain  38.78 
 
 
583 aa  338  9.999999999999999e-92  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_2037  nickel-dependent hydrogenase, large subunit  36.62 
 
 
568 aa  337  2.9999999999999997e-91  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1126  Cytochrome-c3 hydrogenase  36.71 
 
 
559 aa  336  5e-91  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009484  Acry_0337  nickel-dependent hydrogenase, large subunit  36.08 
 
 
598 aa  336  5e-91  Acidiphilium cryptum JF-5  Bacteria  normal  0.0168031  n/a   
 
 
-
 
NC_011146  Gbem_3136  nickel-dependent hydrogenase large subunit  36.71 
 
 
559 aa  336  5.999999999999999e-91  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1375  Ni-Fe hydrogenase large chain  36.95 
 
 
596 aa  335  1e-90  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0200361  normal 
 
 
-
 
NC_007908  Rfer_4091  nickel-dependent hydrogenase, large subunit  36.8 
 
 
568 aa  335  1e-90  Rhodoferax ferrireducens T118  Bacteria  normal  0.0995107  n/a   
 
 
-
 
NC_009675  Anae109_3520  nickel-dependent hydrogenase large subunit  37.77 
 
 
567 aa  334  2e-90  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_00347  Ni-Fe hydrogenase large chain  33.5 
 
 
625 aa  333  4e-90  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3368  nickel-dependent hydrogenase large subunit  35.04 
 
 
570 aa  332  1e-89  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3404  nickel-dependent hydrogenase large subunit  35.51 
 
 
573 aa  332  1e-89  Frankia sp. EAN1pec  Bacteria  normal  0.37903  normal 
 
 
-
 
NC_012560  Avin_50580  Membrane bound nickel-dependent hydrogenase, large subunit, HoxG  37.16 
 
 
602 aa  330  3e-89  Azotobacter vinelandii DJ  Bacteria  normal  0.980558  n/a   
 
 
-
 
NC_007643  Rru_A1162  nickel-dependent hydrogenase, large subunit  34.26 
 
 
596 aa  330  4e-89  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.122791  n/a   
 
 
-
 
NC_008009  Acid345_4240  nickel-dependent hydrogenase, large subunit  36.99 
 
 
563 aa  327  3e-88  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_013512  Sdel_1105  nickel-dependent hydrogenase large subunit  34.87 
 
 
584 aa  325  1e-87  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2089  nickel-dependent hydrogenase, large subunit  36.49 
 
 
567 aa  324  2e-87  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2098  quinone-reactive Ni/Fe hydrogenase, large subunit  36.67 
 
 
567 aa  324  2e-87  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008687  Pden_3098  nickel-dependent hydrogenase, large subunit  35.37 
 
 
597 aa  324  3e-87  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1368  nickel-dependent hydrogenase large subunit  34.7 
 
 
571 aa  323  5e-87  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_2156  nickel-dependent hydrogenase, large subunit  36.49 
 
 
567 aa  323  5e-87  Shewanella sp. MR-7  Bacteria  normal  0.352792  normal  0.370314 
 
 
-
 
NC_008576  Mmc1_2503  nickel-dependent hydrogenase, large subunit  36.81 
 
 
567 aa  323  5e-87  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.153272 
 
 
-
 
NC_008577  Shewana3_1879  nickel-dependent hydrogenase, large subunit  36.49 
 
 
567 aa  323  5e-87  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_1974  nickel-dependent hydrogenase, large subunit  33.72 
 
 
618 aa  323  5e-87  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.688051  normal 
 
 
-
 
NC_008321  Shewmr4_1821  nickel-dependent hydrogenase, large subunit  36.49 
 
 
567 aa  323  6e-87  Shewanella sp. MR-4  Bacteria  normal  0.545248  normal 
 
 
-
 
NC_009831  Ssed_1907  nickel-dependent hydrogenase, large subunit  35.18 
 
 
567 aa  322  8e-87  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.022032 
 
 
-
 
NC_008700  Sama_1678  hydrogenase large chain  35.96 
 
 
567 aa  322  8e-87  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_2032  nickel-dependent hydrogenase large subunit  35.89 
 
 
567 aa  322  9.999999999999999e-87  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0709763  n/a   
 
 
-
 
NC_007493  RSP_0496  hydrogenase protein large subunit  35.02 
 
 
596 aa  322  9.999999999999999e-87  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2147  nickel-dependent hydrogenase, large subunit  35.02 
 
 
596 aa  322  9.999999999999999e-87  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0605986  normal  0.266797 
 
 
-
 
NC_009429  Rsph17025_3375  hypothetical protein  34.84 
 
 
596 aa  321  1.9999999999999998e-86  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.281049  normal 
 
 
-
 
NC_009441  Fjoh_3907  nickel-dependent hydrogenase, large subunit  34.39 
 
 
578 aa  320  3e-86  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1151  nickel-dependent hydrogenase large subunit  34.87 
 
 
605 aa  320  3.9999999999999996e-86  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.238677  normal 
 
 
-
 
NC_012918  GM21_2915  nickel-dependent hydrogenase large subunit  33.75 
 
 
571 aa  320  5e-86  Geobacter sp. M21  Bacteria  n/a    normal  0.289083 
 
 
-
 
NC_009092  Shew_1764  nickel-dependent hydrogenase, large subunit  35.36 
 
 
568 aa  319  7.999999999999999e-86  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_0805  nickel-dependent hydrogenase large subunit  37.42 
 
 
465 aa  318  9e-86  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2104  nickel-dependent hydrogenase, large subunit  34.7 
 
 
567 aa  318  2e-85  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2826  nickel-iron hydrogenase, large subunit  33.56 
 
 
618 aa  316  8e-85  Methylibium petroleiphilum PM1  Bacteria  normal  0.652434  normal 
 
 
-
 
NC_010814  Glov_0147  nickel-dependent hydrogenase large subunit  35.26 
 
 
559 aa  315  9e-85  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_0939  quinone-reactive Ni/Fe-hydrogenase large chain  35.34 
 
 
573 aa  314  1.9999999999999998e-84  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.0992433  n/a   
 
 
-
 
NC_007519  Dde_3756  periplasmic (NiFe) hydrogenase, large subunit, isozyme 2  34.01 
 
 
554 aa  314  2.9999999999999996e-84  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_12910  Ni,Fe-hydrogenase I large subunit  36.07 
 
 
545 aa  314  2.9999999999999996e-84  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.343906  normal  0.388227 
 
 
-
 
NC_009052  Sbal_1888  nickel-dependent hydrogenase large subunit  36.32 
 
 
567 aa  313  3.9999999999999997e-84  Shewanella baltica OS155  Bacteria  normal  0.261784  n/a   
 
 
-
 
NC_011663  Sbal223_2405  nickel-dependent hydrogenase large subunit  36.32 
 
 
567 aa  313  5.999999999999999e-84  Shewanella baltica OS223  Bacteria  normal  0.286384  hitchhiker  0.000502851 
 
 
-
 
NC_009997  Sbal195_1921  nickel-dependent hydrogenase large subunit  36.32 
 
 
567 aa  313  5.999999999999999e-84  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_0702  nickel-dependent hydrogenase large subunit  35.39 
 
 
567 aa  312  1e-83  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_02819  hypothetical protein  35.39 
 
 
567 aa  312  1e-83  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E3421  hydrogenase 2 large subunit  35.39 
 
 
567 aa  312  1e-83  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4306  hydrogenase 2 large subunit  35.39 
 
 
567 aa  312  1e-83  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.228665  normal 
 
 
-
 
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