More than 300 homologs were found in PanDaTox collection
for query gene Bcav_3891 on replicon NC_012669
Organism: Beutenbergia cavernae DSM 12333



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012669  Bcav_3891  two component transcriptional regulator, LuxR family  100 
 
 
221 aa  424  1e-118  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_4260  two component transcriptional regulator, LuxR family  63.59 
 
 
217 aa  249  2e-65  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_0278  two component transcriptional regulator, LuxR family  59.17 
 
 
225 aa  238  5.999999999999999e-62  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.000789071 
 
 
-
 
NC_013521  Sked_21600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  57.73 
 
 
222 aa  233  1.0000000000000001e-60  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.49613  normal 
 
 
-
 
NC_013530  Xcel_2717  two component transcriptional regulator, LuxR family  52.91 
 
 
223 aa  224  1e-57  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  57.99 
 
 
234 aa  221  4.9999999999999996e-57  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  54.46 
 
 
219 aa  218  5e-56  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal 
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  55.61 
 
 
219 aa  216  2.9999999999999998e-55  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  57.27 
 
 
225 aa  214  5.9999999999999996e-55  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_013739  Cwoe_1269  two component transcriptional regulator, LuxR family  56.02 
 
 
226 aa  214  9e-55  Conexibacter woesei DSM 14684  Bacteria  normal  hitchhiker  0.00432991 
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  53.46 
 
 
228 aa  207  7e-53  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_009664  Krad_2518  two component transcriptional regulator, LuxR family  53.92 
 
 
225 aa  207  9e-53  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_39200  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  51.15 
 
 
218 aa  207  1e-52  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.254077 
 
 
-
 
NC_009664  Krad_2599  two component transcriptional regulator, LuxR family  53.77 
 
 
211 aa  206  2e-52  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_014211  Ndas_4872  two component transcriptional regulator, LuxR family  54.72 
 
 
232 aa  206  3e-52  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.247388  normal 
 
 
-
 
NC_009921  Franean1_4684  two component LuxR family transcriptional regulator  52.04 
 
 
223 aa  204  6e-52  Frankia sp. EAN1pec  Bacteria  normal  0.51425  normal 
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  51.63 
 
 
261 aa  204  8e-52  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  53.74 
 
 
219 aa  202  2e-51  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  50.92 
 
 
222 aa  201  6e-51  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  50.46 
 
 
225 aa  200  9.999999999999999e-51  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  52.34 
 
 
220 aa  199  1.9999999999999998e-50  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal 
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  51.13 
 
 
228 aa  199  1.9999999999999998e-50  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_013947  Snas_4662  two component transcriptional regulator, LuxR family  51.6 
 
 
221 aa  198  3.9999999999999996e-50  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.142047  hitchhiker  0.00679998 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  49.77 
 
 
225 aa  197  9e-50  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  50.9 
 
 
226 aa  197  9e-50  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  52.29 
 
 
225 aa  197  1.0000000000000001e-49  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  51.14 
 
 
226 aa  196  2.0000000000000003e-49  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  53 
 
 
230 aa  196  2.0000000000000003e-49  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  51.4 
 
 
224 aa  196  2.0000000000000003e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  50.93 
 
 
218 aa  196  3e-49  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  52.47 
 
 
230 aa  195  5.000000000000001e-49  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0025253 
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  51.38 
 
 
221 aa  195  6e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal 
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  47.58 
 
 
234 aa  194  6e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal 
 
 
-
 
NC_013947  Snas_0607  two component transcriptional regulator, LuxR family  50.47 
 
 
216 aa  194  9e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  50.23 
 
 
224 aa  193  1e-48  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  53.46 
 
 
218 aa  194  1e-48  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  51.83 
 
 
239 aa  193  2e-48  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  49.77 
 
 
215 aa  193  2e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  50.68 
 
 
226 aa  193  2e-48  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  50.68 
 
 
227 aa  193  2e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  51.33 
 
 
229 aa  192  2e-48  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_2472  two component transcriptional regulator, LuxR family  50.92 
 
 
221 aa  192  3e-48  Conexibacter woesei DSM 14684  Bacteria  normal  0.0113125  hitchhiker  0.00367669 
 
 
-
 
NC_014210  Ndas_4652  two component transcriptional regulator, LuxR family  51.4 
 
 
219 aa  192  4e-48  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0949639  normal 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  48.23 
 
 
227 aa  192  4e-48  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0544  two component transcriptional regulator, LuxR family  49.53 
 
 
215 aa  192  4e-48  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  49.12 
 
 
223 aa  192  4e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  51.87 
 
 
221 aa  191  5e-48  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  50.92 
 
 
215 aa  192  5e-48  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_007333  Tfu_1403  LuxR response regulator receiver  51.61 
 
 
214 aa  191  6e-48  Thermobifida fusca YX  Bacteria  normal  0.676683  n/a   
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  51.12 
 
 
222 aa  191  6e-48  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_013093  Amir_2737  two component transcriptional regulator, LuxR family  52 
 
 
227 aa  191  8e-48  Actinosynnema mirum DSM 43827  Bacteria  normal  0.418014  n/a   
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  50.46 
 
 
225 aa  191  9e-48  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_013595  Sros_0609  response regulator receiver protein  47.37 
 
 
218 aa  189  2.9999999999999997e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  50.68 
 
 
217 aa  189  2.9999999999999997e-47  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_013595  Sros_7377  response regulator receiver protein  50.93 
 
 
216 aa  189  2.9999999999999997e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  0.92051  normal 
 
 
-
 
NC_012669  Bcav_0404  two component transcriptional regulator, LuxR family  48.8 
 
 
218 aa  189  2.9999999999999997e-47  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0987348  normal 
 
 
-
 
NC_013947  Snas_5265  two component transcriptional regulator, LuxR family  48.65 
 
 
218 aa  188  4e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4855  two component transcriptional regulator, LuxR family  50.66 
 
 
244 aa  189  4e-47  Conexibacter woesei DSM 14684  Bacteria  normal  0.093919  normal 
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  49.32 
 
 
247 aa  188  5.999999999999999e-47  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_013595  Sros_4508  response regulator receiver protein  48.17 
 
 
219 aa  187  9e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  0.401356  normal  0.568133 
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  49.06 
 
 
241 aa  186  2e-46  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_013947  Snas_5550  two component transcriptional regulator, LuxR family  49.53 
 
 
213 aa  186  2e-46  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.159917  normal  0.0692801 
 
 
-
 
NC_013595  Sros_8243  response regulator receiver protein  50.46 
 
 
217 aa  186  2e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  0.931194  normal  0.230681 
 
 
-
 
NC_013947  Snas_3639  two component transcriptional regulator, LuxR family  48.13 
 
 
215 aa  186  3e-46  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.274763  normal 
 
 
-
 
NC_013093  Amir_2811  two component transcriptional regulator, LuxR family  56.48 
 
 
217 aa  186  3e-46  Actinosynnema mirum DSM 43827  Bacteria  normal  0.206772  n/a   
 
 
-
 
NC_013739  Cwoe_0676  two component transcriptional regulator, LuxR family  48.36 
 
 
215 aa  186  3e-46  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2533  response regulator receiver protein  48.61 
 
 
220 aa  185  4e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.495874 
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  47.03 
 
 
228 aa  185  4e-46  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  50 
 
 
221 aa  185  5e-46  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  50.67 
 
 
225 aa  184  6e-46  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  49.53 
 
 
225 aa  184  7e-46  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  47.47 
 
 
224 aa  184  8e-46  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_013510  Tcur_1300  two component transcriptional regulator, LuxR family  47.44 
 
 
215 aa  184  8e-46  Thermomonospora curvata DSM 43183  Bacteria  normal  0.145336  n/a   
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  47.3 
 
 
230 aa  184  8e-46  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  47.06 
 
 
230 aa  184  9e-46  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_7301  response regulator receiver protein  48.64 
 
 
220 aa  184  1.0000000000000001e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  50 
 
 
224 aa  183  1.0000000000000001e-45  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  50.23 
 
 
220 aa  183  1.0000000000000001e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_009921  Franean1_1652  two component LuxR family transcriptional regulator  50.48 
 
 
217 aa  183  1.0000000000000001e-45  Frankia sp. EAN1pec  Bacteria  normal  0.495895  normal  0.106337 
 
 
-
 
NC_009921  Franean1_3846  two component LuxR family transcriptional regulator  48.84 
 
 
249 aa  184  1.0000000000000001e-45  Frankia sp. EAN1pec  Bacteria  normal  0.525033  normal  0.770826 
 
 
-
 
NC_012669  Bcav_0335  two component transcriptional regulator, LuxR family  51.38 
 
 
220 aa  184  1.0000000000000001e-45  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1618  two component transcriptional regulator, LuxR family  47.71 
 
 
220 aa  184  1.0000000000000001e-45  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  51.83 
 
 
225 aa  183  2.0000000000000003e-45  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  53.88 
 
 
234 aa  183  2.0000000000000003e-45  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal 
 
 
-
 
NC_013235  Namu_3387  two component transcriptional regulator, LuxR family  49.77 
 
 
223 aa  183  2.0000000000000003e-45  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000386408  hitchhiker  0.000570848 
 
 
-
 
NC_013739  Cwoe_3768  two component transcriptional regulator, LuxR family  48.65 
 
 
223 aa  182  3e-45  Conexibacter woesei DSM 14684  Bacteria  normal  0.28303  normal  0.763501 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  49.77 
 
 
222 aa  182  4.0000000000000006e-45  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_013595  Sros_3251  response regulator receiver protein  45.95 
 
 
221 aa  182  5.0000000000000004e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0793449  normal 
 
 
-
 
NC_013510  Tcur_2233  two component transcriptional regulator, LuxR family  52.25 
 
 
232 aa  182  5.0000000000000004e-45  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00197033  n/a   
 
 
-
 
NC_013595  Sros_0232  response regulator receiver protein  49.04 
 
 
213 aa  181  7e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  50.22 
 
 
220 aa  181  7e-45  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  47.73 
 
 
221 aa  181  7e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  44.67 
 
 
250 aa  181  8.000000000000001e-45  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2225  two component transcriptional regulator, LuxR family  54.11 
 
 
209 aa  181  8.000000000000001e-45  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  48.61 
 
 
228 aa  181  8.000000000000001e-45  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_013131  Caci_6049  two component transcriptional regulator, LuxR family  50.45 
 
 
224 aa  181  9.000000000000001e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.764436  normal 
 
 
-
 
NC_009664  Krad_1981  two component transcriptional regulator, LuxR family  48 
 
 
230 aa  181  9.000000000000001e-45  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_3748  two component transcriptional regulator, LuxR family  47.3 
 
 
236 aa  180  1e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_37860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  47.95 
 
 
221 aa  181  1e-44  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_3004  two component transcriptional regulator, LuxR family  46.3 
 
 
223 aa  180  1e-44  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0522265  n/a   
 
 
-
 
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